BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0600.0009.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAJ4.1 B3KAJ4_9BACI NERD domain protein 312 1e-83 A7VHI2.1 A7VHI2_9CLOT Putative uncharacterized protein 109 2e-22 B9MK43.1 B9MK43_ANATD NERD domain protein 108 5e-22 C1I6K4.1 C1I6K4_9CLOT NERD domain-containing protein 103 1e-20 C2HIN0.1 C2HIN0_PEPMA NERD domain protein 100 1e-19 >B3KAJ4.1 B3KAJ4_9BACI NERD domain protein Length = 235 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 147/226 (65%), Positives = 183/226 (80%), Gaps = 3/226 (1%) Query: 1 MFKTLLSLFKKS--DTKPPQAVR-KVQTPKPKPKVAPTRIGELGEHKINLQLDQLPKECK 57 M K L+SLFK + D K Q R K + KPKPKV PTRIGELGEHKIN+QLDQLPK CK Sbjct: 1 MLKKLMSLFKSNTPDKKSTQPSRTKTYSSKPKPKVQPTRIGELGEHKINIQLDQLPKGCK 60 Query: 58 ALSDLLIPNPKSRTGYSQVDHLVISPYGLFMIETKNYQGEIKGGRQDQQWTVSNRYKMYN 117 +SDL++ NPKSRTGYSQ+DH+VI+P+GLF+IETKNY GEIKG R ++ WTVSNR+KMYN Sbjct: 61 YVSDLMVANPKSRTGYSQIDHVVITPHGLFVIETKNYNGEIKGTRDNKSWTVSNRFKMYN 120 Query: 118 PLKQNYGHIKAVESLLQDIAAVKFISMVSFTMRCRFSIDPELRKIQSDELVIYDVELSEF 177 P QNYGHI+A++SLL D ++IS+VSFTMRCRFS+DPELRKIQSDEL++YDVELSE+ Sbjct: 121 PFMQNYGHIQAIKSLLPDYQESRYISLVSFTMRCRFSVDPELRKIQSDELIVYDVELSEY 180 Query: 178 ISRKLLRLKAETPEPSISPAQTQAIYEHLLQANITDSEIRKLHVQR 223 I RK+ R++AE EP+++ + Q IY+ L +ANITD +IR HV + Sbjct: 181 IQRKMNRIQAEKSEPALTESDIQKIYQSLKEANITDPKIRAEHVDK 226 >A7VHI2.1 A7VHI2_9CLOT Putative uncharacterized protein Length = 248 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 111/192 (57%), Gaps = 23/192 (11%) Query: 38 GELGEHKINLQLDQLP-KECKALSDLLIPNPKSRTGYSQVDHLVISPYGLFMIETKNYQG 96 G +GE K+++ L LP + L+D+++P K G +Q+DH+V+S YG+F+IETKNY+G Sbjct: 27 GIIGEKKVSVVLATLPDSDYIILNDVMLPTEK---GSTQIDHIVVSLYGIFVIETKNYKG 83 Query: 97 EIKGGRQDQQWT---VSNRYKMYNPLKQNYGHIKAVESLLQDIAAVKFISMVSFTMRCRF 153 I G +QWT +YK YNP++QNYGHIK + ++L ++ KFIS+V+F+ Sbjct: 84 WITGSPYAEQWTKNMYGKKYKFYNPIRQNYGHIKNLSTIL-GLSEEKFISIVAFSANSTI 142 Query: 154 SIDPELRKIQSDELVIYDVELSEFISRKLLRLKAETPEPSISPAQTQAIYEHLLQANITD 213 K++S + V++ +++ + I EP + + + + + + N Sbjct: 143 -------KVKSRDYVVHILQVKKVIK--------SYKEPVFTQDEIKQLADRIKTINEAS 187 Query: 214 SEIRKLHVQRIK 225 S++R HV+RIK Sbjct: 188 SDLRVGHVKRIK 199 >B9MK43.1 B9MK43_ANATD NERD domain protein Length = 211 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 113/200 (56%), Gaps = 26/200 (13%) Query: 29 KPKVAPTRIGELGEHKINLQLDQL-PKECKALSDLLIPNPKSRTGYSQVDHLVISPYGLF 87 +PK+ G +GE ++ L +L PK+ K L++LLI S+T Q+DH+V+S YG+F Sbjct: 28 RPKIK----GAIGEKSVSFFLARLDPKKYKVLNNLLIK-VGSKT--VQIDHVVVSNYGIF 80 Query: 88 MIETKNYQGEIKGGRQDQQWT---VSNRYKMYNPLKQNYGHIKAVESLLQDIAAVKFISM 144 +IETKNYQG I G D+ WT + K YNP++QNYGHI+A++ +L + +KFIS+ Sbjct: 81 VIETKNYQGWIYGKEYDEYWTQVIYKRKEKFYNPIRQNYGHIQALKEILSYLGDIKFISV 140 Query: 145 VSFTMRCRFSIDPELRKIQSDELVIYDVELSEFISRKLLRLKAETPEPSISPAQTQAIYE 204 + FT + K+++ V++ + KL++ + + ++ Q + I++ Sbjct: 141 IVFTTKADL-------KVETKTDVVW--------TTKLIKTIKKYNQECLTDEQKERIFQ 185 Query: 205 HLLQANITDSEIRKLHVQRI 224 L N+ + + HV+ + Sbjct: 186 RLCSMNVNSYKNMREHVRSV 205 >C1I6K4.1 C1I6K4_9CLOT NERD domain-containing protein Length = 205 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 22/188 (11%) Query: 40 LGEHKINLQLDQLPKECKALSDLLIPNPKSRTGYSQVDHLVISPYGLFMIETKNYQGEIK 99 LGE ++N L +L K K LSD+LI K G SQ+DH++I G+F+IETK+Y G I Sbjct: 32 LGEKEVNQVLSKL-KGYKLLSDILI---KRENGSSQIDHILIGKKGIFVIETKDYSGSIY 87 Query: 100 GGRQDQQWT-VSNRYK--MYNPLKQNYGHIKAVESLLQDIAAVKFISMVSFTMRCRFSID 156 G + + W + NR K YNP++QNYGHIKA+E + FIS++ FT + + Sbjct: 88 GEQYSKYWIQIINRNKNEFYNPIRQNYGHIKALEEYIGRKGV--FISVIVFTNKSK---- 141 Query: 157 PELRKIQSDELVIYDVELSEFISRKLLRLKAETPEPSISPAQTQAIYEHLLQANITDSEI 216 L+K++++ VI +L +FI + + + +S + + IY + + N+ + Sbjct: 142 --LKKVKTETPVIQLKKLKKFI-------RKYSSDIRLSKEEIECIYNSIKKGNVHSNRA 192 Query: 217 RKLHVQRI 224 RK HV+RI Sbjct: 193 RKKHVKRI 200 >C2HIN0.1 C2HIN0_PEPMA NERD domain protein Length = 208 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 77/116 (66%), Gaps = 5/116 (4%) Query: 38 GELGEHKINLQLDQLPKE-CKALSDLLIPNPKSRTGYSQVDHLVISPYGLFMIETKNYQG 96 G +GE + ++L+ L KE + +++L++ N + T +Q+DHLV+S YG+F +ETKNY+G Sbjct: 27 GAMGESAVKIKLNSLDKEKYRVINNLVLENKQGNTKTTQIDHLVVSRYGIFSVETKNYKG 86 Query: 97 EIKGGRQDQQWT---VSNRYKMYNPLKQNYGHIKAVESLLQD-IAAVKFISMVSFT 148 I G ++WT N+ NP+ QNY HIKAVES++QD +++ S+V+F+ Sbjct: 87 WIYGSEHAKKWTQNIYGNKTNFMNPILQNYAHIKAVESIIQDSYPEMRYFSIVAFS 142 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,317,690,316 Number of extensions: 51819731 Number of successful extensions: 141981 Number of sequences better than 1.0e-05: 139 Number of HSP's gapped: 141823 Number of HSP's successfully gapped: 139 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)