BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0600.0007.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7VTW5.1 A7VTW5_9CLOT Putative uncharacterized protein                 82   2e-14
C4IHM2.1 C4IHM2_CLOBU Helix-turn-helix domain protein                  67   6e-10
B1QYV4.1 B1QYV4_CLOBU Transcriptional regulator, XRE family            67   6e-10
B2V3U6.1 B2V3U6_CLOBA Transcriptional regulator, XRE family            59   1e-07
A5N3F5.1 A5N3F5_CLOK5 Predicted transcriptional regulator              57   6e-07

>A7VTW5.1 A7VTW5_9CLOT Putative uncharacterized protein
          Length = 88

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 58/79 (73%)

Query: 1  MRHRKELPGDKNIIGTQVVAIRKAKRMKQKDFLAKLQTFGLDISPTSLSRLEGQYRLVQD 60
          +R RK+  GD+N+IG++V A RK + MKQK+ LA+LQ  G+D++ + LS+LEGQ R V D
Sbjct: 7  LRLRKQALGDRNLIGSRVEAARKKQGMKQKELLAQLQVSGVDMNASGLSKLEGQIRFVTD 66

Query: 61 YEVVAIVKALDVSVGELLG 79
          +E+VA+   L VSV  LLG
Sbjct: 67 FELVALADILGVSVDWLLG 85


>C4IHM2.1 C4IHM2_CLOBU Helix-turn-helix domain protein
          Length = 73

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 50/72 (69%)

Query: 10 DKNIIGTQVVAIRKAKRMKQKDFLAKLQTFGLDISPTSLSRLEGQYRLVQDYEVVAIVKA 69
          ++NIIG +V  IRKAK + Q++ +A++Q  GL+I    LSR+E   R V D+EV AI +A
Sbjct: 2  NRNIIGKKVRIIRKAKNLTQEELIARIQLKGLNIDRPMLSRIETDSREVYDFEVKAIAEA 61

Query: 70 LDVSVGELLGEN 81
          LD+SV EL  +N
Sbjct: 62 LDISVDELFIQN 73


>B1QYV4.1 B1QYV4_CLOBU Transcriptional regulator, XRE family
          Length = 73

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 50/72 (69%)

Query: 10 DKNIIGTQVVAIRKAKRMKQKDFLAKLQTFGLDISPTSLSRLEGQYRLVQDYEVVAIVKA 69
          ++NIIG +V  IRKAK + Q++ +A++Q  GL+I    LSR+E   R V D+EV AI +A
Sbjct: 2  NRNIIGKKVRIIRKAKNLTQEELIARIQLKGLNIDRPMLSRIETDSREVYDFEVKAIAEA 61

Query: 70 LDVSVGELLGEN 81
          LD+SV EL  +N
Sbjct: 62 LDISVDELFIQN 73


>B2V3U6.1 B2V3U6_CLOBA Transcriptional regulator, XRE family
          Length = 73

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query: 10 DKNIIGTQVVAIRKAKRMKQKDFLAKLQTFGLDISPTSLSRLEGQYRLVQDYEVVAIVKA 69
          ++NIIG +V  IRK K + Q++ +A +Q   L I    LSR+E   R V D+EV AI +A
Sbjct: 2  NRNIIGKKVRIIRKLKNLTQEELIAIIQLKCLSIDRPMLSRIETDSREVYDFEVKAIAEA 61

Query: 70 LDVSVGELLGEN 81
          LD+SV EL  +N
Sbjct: 62 LDISVDELFIQN 73


>A5N3F5.1 A5N3F5_CLOK5 Predicted transcriptional regulator
          Length = 81

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 4/83 (4%)

Query: 1  MRHRKELPGDKNIIGTQV--VAIRKAKRMKQKDFLAKLQTFGLDISPTSLSRLEGQYRLV 58
          MRH +    DKN+IG +V    ++   ++ Q D LA+L   G+++  T++S++E + R V
Sbjct: 1  MRHAEN--KDKNLIGDRVKYARLKNKPKVTQNDLLARLAVRGIELEKTTISKIESKTRPV 58

Query: 59 QDYEVVAIVKALDVSVGELLGEN 81
           D E+VAI  AL+VS+  LLG++
Sbjct: 59 TDKELVAIADALNVSILWLLGKD 81


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.137    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 435,995,026
Number of extensions: 13010821
Number of successful extensions: 30026
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 30028
Number of HSP's successfully gapped: 10
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)