BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0600.0006.p (605 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7H544.1 B7H544_BACC4 Putative uncharacterized protein 74 5e-11 C3DJC6.1 C3DJC6_BACTS Putative uncharacterized protein 72 1e-10 C2UDF3.1 C2UDF3_BACCE Putative uncharacterized protein 72 2e-10 C3E2Z8.1 C3E2Z8_BACTU Putative uncharacterized protein 72 2e-10 C2YA92.1 C2YA92_BACCE Putative uncharacterized protein 71 3e-10 >B7H544.1 B7H544_BACC4 Putative uncharacterized protein Length = 616 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 113/521 (21%), Positives = 210/521 (40%), Gaps = 73/521 (14%) Query: 97 LFMPHTGDEF--PWRLGVYFLEVHIGQDVYGSGLMVSPIHLSQEQVQHMHHLLEQEIEGM 154 L H EF PWR G+Y EV I Y + P + +Q + + ++ + + Sbjct: 101 LIYEHGKTEFFYPWRCGLYHFEVRIEDTTYYGAFQIVPKNFFDDQFEMIQDYVKSILNEL 160 Query: 155 IYDLIFTQTSTSQEHEILRTKSYYDYILRLINDKEFLSANLMQIERNPLSTIETFYDVGT 214 I D + + + S +I SY + +L + + +IE + ST Y Sbjct: 161 ILDRGYYKKTFSALSDI-EDSSYLVLLRKLPQKMKMIKQIFKKIESS--STFINEYKWEG 217 Query: 215 FPCKQDQKSLRMKQVKGNAVDFNKRKRLILDLPANRWIKHVLLSWKNELLTVSS----AI 270 K +K + + K A +N++ + N ++K+ + + + L+ S I Sbjct: 218 KERKPTRKGTIVAERKPYAKHYNRKFMEQKNSKENAFLKYKAMQFYHYLIEAKSFLRQTI 277 Query: 271 EV----------DLTHALTRMAKKEDDKRANEKHKQRYFNARDISYEA---RSAMSRRIY 317 E+ + T + E + ++ KQ+Y N + EA +S+M + Y Sbjct: 278 EILEREKKKKSEEFQAVKTIIQTIERNGSVTDREKQKYKNIHLLK-EADLRKSSMKIQEY 336 Query: 318 RLADEIVRIQREVGVLSRWHDAVQH--MIGRIIYILVSTDLKN-------IPHGQQRPQL 368 ++ IV H+ VQ+ M+ + T+ N IPH Q Sbjct: 337 KILAHIV------------HENVQYFQMLMHSSFWREVTETSNMNLHDLPIPHQQLL--- 381 Query: 369 KEKHYRDISQWVEEGRRVLLGRESAKHIVRVLKPTWKVYEQFVYFQVVELVKRMGF---- 424 H + Q+ ++ +L V KPT+ VYE + +F V+ L++++GF Sbjct: 382 --HHLEVLPQYTDQSPSLLF----------VYKPTFLVYEYYAFFIVISLLEQIGFEARN 429 Query: 425 ----QVSSHASWDQLRDLRSGTCLTLENDKYIIHAWYDRTVDLRE-DAFRTRDQFFSRQ- 478 Q+ H D L+D GT + LE D +H ++ ++ A F++ + Sbjct: 430 SIREQIQEHFYVDGLQD---GTTVVLERDDIKVHVAFNDLIETHPLIALSKGSNFYNGED 486 Query: 479 IIQPDIRLDLYKKGDVPMLL-SCVAMDAKHRKYRSLYNEAYTNEVFTQLSKYLNIFYAGQ 537 +PDIRLD Y K D + S + ++ K+ +++ + Q+ KY +I Y + Sbjct: 487 TKKPDIRLDCYVKEDGKYVYKSSIIIEVKYSPMYNIFQHVGNTKATEQMYKYWSIKYVEE 546 Query: 538 NTTPRNKRSTVVHRVICLYSKDDNADVFQDEQPLIYIQLFP 578 R ++ VIC+Y + +++QL+P Sbjct: 547 QDGKRVYYRRSIYEVICVYPGSHMHSKKIESGCGVFLQLYP 587 >C3DJC6.1 C3DJC6_BACTS Putative uncharacterized protein Length = 570 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 117/527 (22%), Positives = 214/527 (40%), Gaps = 85/527 (16%) Query: 97 LFMPHTGDEF--PWRLGVYFLEVHIGQDVYGSGLMVSPIHLSQEQVQHMHHLLEQEIEGM 154 L H EF PWR G+Y EV I Y + P + +Q + + ++ + + Sbjct: 55 LIYEHGKTEFFYPWRCGLYHFEVRIEDTTYYGAFQIVPKNFFDDQFEMIQDYVKSILNEL 114 Query: 155 IYDLIFTQTSTSQEHEILRTKSYYDYILRLINDK---------------EFLSANLMQ-I 198 I D + + + S +I S Y +LR + K +F++A + Sbjct: 115 ILDRGYYKKTFSALSDI--EDSSYLVLLRKLPQKMKMIKQIFKKIEASSKFINAYKWEGK 172 Query: 199 ERNPLSTIETFYDVGTFPCKQDQKSLRMKQVKGNAVDFNKRKRLILD---LPANRWIKHV 255 ER P + T+ ++K + K K NA F K K + + A +++ Sbjct: 173 ERKPTRRGTIVAERKTYAKHYNRKFIEQKNSKENA--FLKYKAMQFYHYLIEAKSFLRQT 230 Query: 256 LLSWKNELLTVSSAIEVDLTHAL-TRMAKKEDDKRANEKHKQRYFNARDISYEA---RSA 311 + E+L + + A+ T + E + ++ KQ+Y N + EA +S+ Sbjct: 231 I-----EILEREKKKKSEEFQAVKTIIQTIERNGSVTDREKQKYKNIHLLK-EADLRKSS 284 Query: 312 MSRRIYRLADEIVRIQREVGVLSRWHDAVQH--MIGRIIYILVSTDLKN-------IPHG 362 M + Y++ IV H+ VQ+ M+ + T+ N IPH Sbjct: 285 MKIQEYKILAHIV------------HENVQYFQMLMHSSFWREVTETSNMNLHDLPIPHQ 332 Query: 363 QQRPQLKEKHYRDISQWVEEGRRVLLGRESAKHIVRVLKPTWKVYEQFVYFQVVELVKRM 422 Q H + Q+ ++ +L V KPT+ VYE + +F V+ +++++ Sbjct: 333 QLL-----HHLEVLPQYTDQSPSLLF----------VYKPTFLVYEYYAFFIVISILEQI 377 Query: 423 GF--------QVSSHASWDQLRDLRSGTCLTLENDKYIIHAWYDRTVDLRE-DAFRTRDQ 473 GF Q+ H D L+D GT + LE D +HA ++ ++ A Sbjct: 378 GFEARNSIREQIQEHFYVDGLQD---GTTVVLERDDIKVHAAFNDLIETHPLIALSKGSN 434 Query: 474 FFSRQ-IIQPDIRLDLYKKGDVPMLL-SCVAMDAKHRKYRSLYNEAYTNEVFTQLSKYLN 531 F++ + +PDIRLD Y K D + S + ++ K+ +++ + Q+ KY + Sbjct: 435 FYNGEDTKKPDIRLDCYVKEDGNYVYKSSIIIEVKYSPMYNIFQHVGNTKATEQMYKYWS 494 Query: 532 IFYAGQNTTPRNKRSTVVHRVICLYSKDDNADVFQDEQPLIYIQLFP 578 I Y + R ++ VIC+Y + +++QL+P Sbjct: 495 IKYVEEQDGKRVYYRRSIYEVICVYPGSHMHSKKIESGCGVFLQLYP 541 >C2UDF3.1 C2UDF3_BACCE Putative uncharacterized protein Length = 547 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 112/521 (21%), Positives = 209/521 (40%), Gaps = 73/521 (14%) Query: 97 LFMPHTGDEF--PWRLGVYFLEVHIGQDVYGSGLMVSPIHLSQEQVQHMHHLLEQEIEGM 154 L H EF PWR G+Y EV I Y + P + +Q + + ++ + + Sbjct: 32 LIYEHGKTEFFYPWRCGLYHFEVRIEDTTYYGAFQIVPKNFFDDQFEMIQDYVKSILNEL 91 Query: 155 IYDLIFTQTSTSQEHEILRTKSYYDYILRLINDKEFLSANLMQIERNPLSTIETFYDVGT 214 I D + + + S +I SY + +L + + +IE + S Y Sbjct: 92 ILDRGYYKKTFSALSDI-EDSSYLVLLRKLPQKMKMIKQIFKKIESS--SKFINEYKWEG 148 Query: 215 FPCKQDQKSLRMKQVKGNAVDFNKRKRLILDLPANRWIKHVLLSWKNELLTVSS----AI 270 K +K + + K A +N++ + N ++K+ + + + L+ S I Sbjct: 149 KERKPTRKGTIVAERKPYAKHYNRKFMEQKNSKENAFLKYKAMQFYHYLIEAKSFLRQTI 208 Query: 271 EV----------DLTHALTRMAKKEDDKRANEKHKQRYFNARDISYEA---RSAMSRRIY 317 E+ + T + E + ++ KQ+Y N + EA +S+M + Y Sbjct: 209 EILEREKKKKSEEFQAVKTIIQTIERNGSVTDREKQKYKNIHLLK-EADLRKSSMKIQEY 267 Query: 318 RLADEIVRIQREVGVLSRWHDAVQH--MIGRIIYILVSTDLKN-------IPHGQQRPQL 368 ++ IV H+ VQ+ M+ + T+ N IPH Q Sbjct: 268 KILAHIV------------HENVQYFQMLMHSSFWREVTETSNMNLHDLSIPHQQLL--- 312 Query: 369 KEKHYRDISQWVEEGRRVLLGRESAKHIVRVLKPTWKVYEQFVYFQVVELVKRMGF---- 424 H + Q+ ++ +L V KPT+ VYE + +F V+ L++++GF Sbjct: 313 --HHLEVLPQYTDQSPSLLF----------VYKPTFLVYEYYAFFIVISLLEQIGFEARN 360 Query: 425 ----QVSSHASWDQLRDLRSGTCLTLENDKYIIHAWYDRTVDLRE-DAFRTRDQFFSRQ- 478 Q+ H D L+D GT + LE D +H ++ ++ A F++ + Sbjct: 361 SIREQIQEHFYVDGLQD---GTTVVLERDDIKVHVAFNDLIETHPLIALSKGSNFYNGED 417 Query: 479 IIQPDIRLDLYKKGDVPMLL-SCVAMDAKHRKYRSLYNEAYTNEVFTQLSKYLNIFYAGQ 537 +PDIRLD Y K D + S + ++ K+ +++ + Q+ KY +I Y + Sbjct: 418 TKKPDIRLDCYVKEDGKYVYKSSIIIEVKYSPMYNIFQHVGNTKATEQMYKYWSIKYVEE 477 Query: 538 NTTPRNKRSTVVHRVICLYSKDDNADVFQDEQPLIYIQLFP 578 R ++ VIC+Y + +++QL+P Sbjct: 478 QDGKRVYYRRSIYEVICVYPGSHMHSKKIESGCGVFLQLYP 518 >C3E2Z8.1 C3E2Z8_BACTU Putative uncharacterized protein Length = 547 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 112/521 (21%), Positives = 209/521 (40%), Gaps = 73/521 (14%) Query: 97 LFMPHTGDEF--PWRLGVYFLEVHIGQDVYGSGLMVSPIHLSQEQVQHMHHLLEQEIEGM 154 L H EF PWR G+Y EV I Y + P + +Q + + ++ + + Sbjct: 32 LIYEHGKTEFFYPWRCGLYHFEVRIEDTTYYGAFQIVPKNFFDDQFEMIQDYVKSILNEL 91 Query: 155 IYDLIFTQTSTSQEHEILRTKSYYDYILRLINDKEFLSANLMQIERNPLSTIETFYDVGT 214 I D + + + S +I SY + +L + + +IE + S Y Sbjct: 92 ILDRGYYKKTFSALSDI-EDSSYLVLLRKLPQKMKMIKQIFKKIESS--SKFINEYKWEG 148 Query: 215 FPCKQDQKSLRMKQVKGNAVDFNKRKRLILDLPANRWIKHVLLSWKNELLTVSS----AI 270 K +K + + K A +N++ + N ++K+ + + + L+ S I Sbjct: 149 KERKPTRKGTIVAERKPYAKHYNRKFMEQKNSKENAFLKYKAMQFYHYLIEAKSFLRQTI 208 Query: 271 EV----------DLTHALTRMAKKEDDKRANEKHKQRYFNARDISYEA---RSAMSRRIY 317 E+ + T + E + ++ KQ+Y N + EA +S+M + Y Sbjct: 209 EILEREKKKKSEEFQAVKTIIQTIERNGSVTDREKQKYKNIHLLK-EADLRKSSMKIQEY 267 Query: 318 RLADEIVRIQREVGVLSRWHDAVQH--MIGRIIYILVSTDLKN-------IPHGQQRPQL 368 ++ IV H+ VQ+ M+ + T+ N IPH Q Sbjct: 268 KILAHIV------------HENVQYFQMLMHSSFWREVTETNNMNLHDLPIPHQQLL--- 312 Query: 369 KEKHYRDISQWVEEGRRVLLGRESAKHIVRVLKPTWKVYEQFVYFQVVELVKRMGF---- 424 H + Q+ ++ +L V KPT+ VYE + +F V+ L++++GF Sbjct: 313 --HHLEVLPQYTDQSPSLLF----------VYKPTFLVYEYYAFFIVISLLEQIGFEARN 360 Query: 425 ----QVSSHASWDQLRDLRSGTCLTLENDKYIIHAWYDRTVDLRE-DAFRTRDQFFSRQ- 478 Q+ H D L+D GT + LE D +H ++ ++ A F++ + Sbjct: 361 SIREQIQEHFYVDGLQD---GTTVVLERDDIKVHVAFNDLIETHPLIALSKGSNFYNGED 417 Query: 479 IIQPDIRLDLYKKGDVPMLL-SCVAMDAKHRKYRSLYNEAYTNEVFTQLSKYLNIFYAGQ 537 +PDIRLD Y K D + S + ++ K+ +++ + Q+ KY +I Y + Sbjct: 418 TKKPDIRLDCYVKEDGKYVYKSSIIIEVKYSPMYNIFQHVGNTKATEQMYKYWSIKYVEE 477 Query: 538 NTTPRNKRSTVVHRVICLYSKDDNADVFQDEQPLIYIQLFP 578 R ++ VIC+Y + +++QL+P Sbjct: 478 QDGKRVYYRRSIYEVICVYPGSHMHSKKIESGCGVFLQLYP 518 >C2YA92.1 C2YA92_BACCE Putative uncharacterized protein Length = 547 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 112/521 (21%), Positives = 209/521 (40%), Gaps = 73/521 (14%) Query: 97 LFMPHTGDEF--PWRLGVYFLEVHIGQDVYGSGLMVSPIHLSQEQVQHMHHLLEQEIEGM 154 L H EF PWR G+Y EV I Y + P + +Q + + ++ + + Sbjct: 32 LIYEHGKTEFFYPWRCGLYHFEVRIEDTTYYGAFQIVPKNFFDDQFEMIQDYVKSILNEL 91 Query: 155 IYDLIFTQTSTSQEHEILRTKSYYDYILRLINDKEFLSANLMQIERNPLSTIETFYDVGT 214 I D + + + S +I SY + +L + + +IE + S Y Sbjct: 92 ILDRGYYKKTFSALSDI-EDSSYLVLLRKLPQKMKMIKQIFKKIESS--SKFINEYKWEG 148 Query: 215 FPCKQDQKSLRMKQVKGNAVDFNKRKRLILDLPANRWIKHVLLSWKNELLTVSS----AI 270 K +K + + K A +N++ + N ++K+ + + + L+ S I Sbjct: 149 KERKPTRKGTIVAERKPYAKHYNRKFMEQKNSKENAFLKYKAMQFYHYLIEAKSFLRQTI 208 Query: 271 EV----------DLTHALTRMAKKEDDKRANEKHKQRYFNARDISYEA---RSAMSRRIY 317 E+ + T + E + ++ KQ+Y N + EA +S+M + Y Sbjct: 209 EILEREKKKKSEEFQAVKTIIQTIERNGSVTDREKQKYKNIHLLK-EADLRKSSMKIQEY 267 Query: 318 RLADEIVRIQREVGVLSRWHDAVQH--MIGRIIYILVSTDLKN-------IPHGQQRPQL 368 ++ IV H+ VQ+ M+ + T+ N IPH Q Sbjct: 268 KILAHIV------------HENVQYFQMLMHSSFWREVTETSNMNLHDLPIPHQQLL--- 312 Query: 369 KEKHYRDISQWVEEGRRVLLGRESAKHIVRVLKPTWKVYEQFVYFQVVELVKRMGF---- 424 H + Q+ ++ +L V KPT+ VYE + +F V+ L++++GF Sbjct: 313 --HHLEVLPQYTDQSPSLLF----------VYKPTFLVYEYYAFFIVISLLEQIGFEARN 360 Query: 425 ----QVSSHASWDQLRDLRSGTCLTLENDKYIIHAWYDRTVDLRE-DAFRTRDQFFSRQ- 478 Q+ H D L+D GT + LE D +H ++ ++ A F++ + Sbjct: 361 SIREQIQEHFYVDGLQD---GTTVVLERDDIKVHVAFNDLIETHPLIALSKGSNFYNGED 417 Query: 479 IIQPDIRLDLYKKGDVPMLL-SCVAMDAKHRKYRSLYNEAYTNEVFTQLSKYLNIFYAGQ 537 +PDIRLD Y K D + S + ++ K+ +++ + Q+ KY +I Y + Sbjct: 418 TKKPDIRLDCYVKEDGKYVYKSSIIIEVKYSPMYNIFQHVGNTKATEQMYKYWSIKYVEE 477 Query: 538 NTTPRNKRSTVVHRVICLYSKDDNADVFQDEQPLIYIQLFP 578 R ++ VIC+Y + +++QL+P Sbjct: 478 QDGKRVYYRRSIYEVICVYPGSHMHSKKIESGCGVFLQLYP 518 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,600,196,932 Number of extensions: 150934332 Number of successful extensions: 343155 Number of sequences better than 1.0e-05: 78 Number of HSP's gapped: 343081 Number of HSP's successfully gapped: 78 Length of query: 605 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 463 Effective length of database: 1,722,912,073 Effective search space: 797708289799 Effective search space used: 797708289799 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)