BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0600.0005.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7GPC2.1 A7GPC2_BACCN ATPase associated with various cellular ac... 212 3e-53 C3BK44.1 C3BK44_9BACI Putative uncharacterized protein 194 7e-48 C3B376.1 C3B376_BACMY Putative uncharacterized protein 194 9e-48 C3ALA7.1 C3ALA7_BACMY Putative uncharacterized protein 194 9e-48 C2W7R6.1 C2W7R6_BACCE Putative uncharacterized protein 194 1e-47 >A7GPC2.1 A7GPC2_BACCN ATPase associated with various cellular activities AAA_5 Length = 605 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 126/302 (41%), Positives = 184/302 (60%), Gaps = 16/302 (5%) Query: 24 SPSYTEPADILGYLNPQLGLFMESETGLTSFLERASXXXXXPDELFMVLFDEMNLGQVEH 83 SP+Y EP D+LGYL+P G F+ESET L L +A P++L+M++FDEMN+ +EH Sbjct: 315 SPTYQEPHDLLGYLHPN-GAFIESETQLVRTLLKAKEN---PNQLYMIVFDEMNMSHIEH 370 Query: 84 YFAPFISLLELPKDQRELRIYSQGSICHNKSFAKGCIPVRDNVLFVGTANFDETTKDFSN 143 +F PF+S+L+L K R L +Y +G+ N+ AK I + +N++FVGT NFDETTK+ S+ Sbjct: 371 WFTPFLSILQLEKKNRILTLYEEGARGENQVPAK--IEIGENIIFVGTINFDETTKELSD 428 Query: 144 RMLDRTNVILLEKLTFGEASVPKEENNEATNMTAVVNRRIYNQEWIKINVAMEE----HE 199 R+LDR N+I L+K+ F E S+ +E+N + ++ V R + W++ N AM E E Sbjct: 429 RLLDRVNLITLQKIPFCEMSMRQEKNIQFPSLA--VTAREFRINWVR-NKAMVEVFSEEE 485 Query: 200 ILLLDRLHDLMREYDAQIGVSFRIYKGIEKYLANIPTDADGNALITRHTALDYQVKQRIL 259 + LLD+LHD++ YDA G+SFR I YL NIP + + +I+R D Q+KQR+L Sbjct: 486 LELLDKLHDILSSYDASKGISFRCAAAIASYLQNIPMHNNQSYMISREEGFDLQIKQRVL 545 Query: 260 TKIRGHREQIQDLIGYCDAENRYHMGYIGRLLTEEGEGEDRFKFSLALLKQKAKELTRNG 319 TK+RG + L+ E + I L + F+ SLA L+QK +EL G Sbjct: 546 TKLRGTEMTVGALLS---EEEKKGAMLIPLLQSPLANCVSTFEHSLAYLRQKRRELELYG 602 Query: 320 YA 321 YA Sbjct: 603 YA 604 >C3BK44.1 C3BK44_9BACI Putative uncharacterized protein Length = 586 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 177/301 (58%), Gaps = 14/301 (4%) Query: 24 SPSYTEPADILGYLNPQLGLFMESETGLTSFLERASXXXXXPDELFMVLFDEMNLGQVEH 83 SPSY EP DI+GYL+P G ++ESET L L +A P++L+M++FDEMN+ +EH Sbjct: 296 SPSYQEPHDIIGYLHPN-GTYIESETKLIRTLLKA---YENPNQLYMIVFDEMNMSHIEH 351 Query: 84 YFAPFISLLELPKDQRELRIYSQGSICHNKSFAKGCIPVRDNVLFVGTANFDETTKDFSN 143 +F PF+S+L+L K R L +Y +G+ N K I + +N++F+GT NFDETTK+ S+ Sbjct: 352 WFTPFLSILQLEKKNRILSLYEEGNEIENIIPPK--IEIGENIIFIGTVNFDETTKELSD 409 Query: 144 RMLDRTNVILLEKLTFGEASVPKEENNEATNMTAVVNRRIYNQEWIK---INVAMEEHEI 200 R+LDRTN+I L+K+ F E ++ + + + + + W++ I + E E+ Sbjct: 410 RLLDRTNLITLQKIPFCEINMQQNKGIQIPPLQVTTGE--FRMNWLRNKEIIDVLFEEEL 467 Query: 201 LLLDRLHDLMREYDAQIGVSFRIYKGIEKYLANIPTDADGNALITRHTALDYQVKQRILT 260 LLD+LH ++ +DA GVSFR I YL NIP + + +I+R D QVKQRILT Sbjct: 468 ELLDKLHGVLSSHDASKGVSFRCAAAIATYLQNIPPKDNQSYMISREEGFDLQVKQRILT 527 Query: 261 KIRGHREQIQDLIGYCDAENRYHMGYIGRLLTEEGEGEDRFKFSLALLKQKAKELTRNGY 320 K+RG I L+ + + + + L + F+ SLA ++QK +EL GY Sbjct: 528 KLRGTEMTIGPLL---REDEKKGLSLVSLLQSPLANCVSAFEHSLAYIRQKRRELELYGY 584 Query: 321 A 321 A Sbjct: 585 A 585 >C3B376.1 C3B376_BACMY Putative uncharacterized protein Length = 586 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 176/301 (58%), Gaps = 14/301 (4%) Query: 24 SPSYTEPADILGYLNPQLGLFMESETGLTSFLERASXXXXXPDELFMVLFDEMNLGQVEH 83 SPSY EP DI+GYL+P G ++ESET L L +A P++L+M++FDEMN+ +EH Sbjct: 296 SPSYQEPHDIIGYLHPN-GTYIESETKLIRTLLKA---YENPNQLYMIVFDEMNMSHIEH 351 Query: 84 YFAPFISLLELPKDQRELRIYSQGSICHNKSFAKGCIPVRDNVLFVGTANFDETTKDFSN 143 +F PF+S+L+L K R L +Y +G+ N K I + +N++F+GT NFDETTK+ S+ Sbjct: 352 WFTPFLSILQLEKKNRILSLYEEGNEIENIIPPK--IEIGENIIFIGTVNFDETTKELSD 409 Query: 144 RMLDRTNVILLEKLTFGEASVPKEENNEATNMTAVVNRRIYNQEWIK---INVAMEEHEI 200 R+LDRTN+I L+K+ F E ++ + + + + W++ I + E E+ Sbjct: 410 RLLDRTNLITLQKIPFCEINMQQNRGIQIPPLQVTTGE--FRMNWLRNKEIIDVLFEEEL 467 Query: 201 LLLDRLHDLMREYDAQIGVSFRIYKGIEKYLANIPTDADGNALITRHTALDYQVKQRILT 260 LLD+LH ++ +DA GVSFR I YL NIP + + +I+R D QVKQRILT Sbjct: 468 ELLDKLHGVLSSHDASKGVSFRCAAAIATYLQNIPPKDNQSYMISREEGFDLQVKQRILT 527 Query: 261 KIRGHREQIQDLIGYCDAENRYHMGYIGRLLTEEGEGEDRFKFSLALLKQKAKELTRNGY 320 K+RG I L+ + + + + L + F+ SLA ++QK +EL GY Sbjct: 528 KLRGTEMTIGPLL---REDEKKGLSLVSLLQSPLANCVSAFEHSLAYIRQKRRELELYGY 584 Query: 321 A 321 A Sbjct: 585 A 585 >C3ALA7.1 C3ALA7_BACMY Putative uncharacterized protein Length = 586 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 176/301 (58%), Gaps = 14/301 (4%) Query: 24 SPSYTEPADILGYLNPQLGLFMESETGLTSFLERASXXXXXPDELFMVLFDEMNLGQVEH 83 SPSY EP DI+GYL+P G ++ESET L L +A P++L+M++FDEMN+ +EH Sbjct: 296 SPSYQEPHDIIGYLHPN-GTYIESETKLIRTLLKA---YENPNQLYMIVFDEMNMSHIEH 351 Query: 84 YFAPFISLLELPKDQRELRIYSQGSICHNKSFAKGCIPVRDNVLFVGTANFDETTKDFSN 143 +F PF+S+L+L K R L +Y +G+ N K I + +N++F+GT NFDETTK+ S+ Sbjct: 352 WFTPFLSILQLEKKNRILSLYEEGNEIENIIPPK--IEIGENIIFIGTVNFDETTKELSD 409 Query: 144 RMLDRTNVILLEKLTFGEASVPKEENNEATNMTAVVNRRIYNQEWIK---INVAMEEHEI 200 R+LDRTN+I L+K+ F E ++ + + + + W++ I + E E+ Sbjct: 410 RLLDRTNLITLQKIPFCEINMQQNRGIQIPPLQVTTGE--FRMNWLRNKEIIDVLFEEEL 467 Query: 201 LLLDRLHDLMREYDAQIGVSFRIYKGIEKYLANIPTDADGNALITRHTALDYQVKQRILT 260 LLD+LH ++ +DA GVSFR I YL NIP + + +I+R D QVKQRILT Sbjct: 468 ELLDKLHGVLSSHDASKGVSFRCAAAIATYLQNIPPKDNQSYMISREEGFDLQVKQRILT 527 Query: 261 KIRGHREQIQDLIGYCDAENRYHMGYIGRLLTEEGEGEDRFKFSLALLKQKAKELTRNGY 320 K+RG I L+ + + + + L + F+ SLA ++QK +EL GY Sbjct: 528 KLRGTEMTIGPLL---REDEKKGLSLVSLLQSPLANCVSAFEHSLAYIRQKRRELELYGY 584 Query: 321 A 321 A Sbjct: 585 A 585 >C2W7R6.1 C2W7R6_BACCE Putative uncharacterized protein Length = 587 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 177/302 (58%), Gaps = 16/302 (5%) Query: 24 SPSYTEPADILGYLNPQLGLFMESETGLTSFLERASXXXXXPDELFMVLFDEMNLGQVEH 83 SPSY EP DILGYL+P G ++ESET L L +A P++L+M++FDEMN+ +EH Sbjct: 297 SPSYQEPHDILGYLHPN-GTYIESETRLIRTLLKA---YENPNQLYMIVFDEMNMSHIEH 352 Query: 84 YFAPFISLLELPKDQRELRIYSQGSICHNKSFAKGCIPVRDNVLFVGTANFDETTKDFSN 143 +F PF+S+L+L K R L +Y +G+ N K I + +N++F+GT NFDETTK+ S+ Sbjct: 353 WFTPFLSILQLEKKNRILSLYEEGNEIENIVPPK--IEIGENIIFIGTVNFDETTKELSD 410 Query: 144 RMLDRTNVILLEKLTFGEASVPKEENNEATNMTAVVNRRIYNQEWIK----INVAMEEHE 199 R+LDR N+I L+K+ F E ++ K + + + + W++ I+V E E Sbjct: 411 RLLDRANLITLQKIPFCEINMQKNQGIQIPPLQVTTGE--FRMSWLRNKEMIDV-FSEEE 467 Query: 200 ILLLDRLHDLMREYDAQIGVSFRIYKGIEKYLANIPTDADGNALITRHTALDYQVKQRIL 259 + LLD+LH L+ +DA GVSFR I YL NIP + + +I+R D QVKQR+L Sbjct: 468 LELLDKLHALISSHDASKGVSFRCAAAIATYLQNIPRKDNQSYMISREEGFDLQVKQRVL 527 Query: 260 TKIRGHREQIQDLIGYCDAENRYHMGYIGRLLTEEGEGEDRFKFSLALLKQKAKELTRNG 319 TK+RG I L+ + + + + L + F+ SLA +++K +EL G Sbjct: 528 TKLRGTEMTIGPLL---REDEKKGLSLVALLQSPLANCVSAFEHSLAYIREKRRELELYG 584 Query: 320 YA 321 YA Sbjct: 585 YA 586 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,762,672,204 Number of extensions: 74197389 Number of successful extensions: 141920 Number of sequences better than 1.0e-05: 183 Number of HSP's gapped: 141424 Number of HSP's successfully gapped: 183 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)