BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0152.p
         (69 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DCK4.1 B1DCK4_9BACL Two component transcriptional regulator, w...   102   8e-21
A6TPN8.1 A6TPN8_ALKMQ Two component transcriptional regulator, w...    94   5e-18
C4C7S3.1 C4C7S3_9FUSO Response regulator with CheY-like receiver...    86   1e-15
B0P674.1 B0P674_9FIRM Putative uncharacterized protein                 86   1e-15
A8ML70.1 A8ML70_ALKOO Two component transcriptional regulator, w...    85   2e-15

>B1DCK4.1 B1DCK4_9BACL Two component transcriptional regulator, winged
          helix family
          Length = 225

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 55/69 (79%)

Query: 1  VEDEVHLTEALTQILKKQNYSVDAVHDGRSGLDYAQSGIYDLLLLDIMMPEMDGFTVLKK 60
          VEDEV+L +AL+QILKK NYSVD  HDG+SGLD A  GIYDLLLLDIM+PEMDG TVLKK
Sbjct: 6  VEDEVNLADALSQILKKNNYSVDVAHDGQSGLDNALCGIYDLLLLDIMLPEMDGITVLKK 65

Query: 61 LRSGAYPLP 69
          LR      P
Sbjct: 66 LREEGIATP 74


>A6TPN8.1 A6TPN8_ALKMQ Two component transcriptional regulator, winged
          helix family
          Length = 225

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 55/69 (79%)

Query: 1  VEDEVHLTEALTQILKKQNYSVDAVHDGRSGLDYAQSGIYDLLLLDIMMPEMDGFTVLKK 60
          +EDE+ L EAL+Q+LKK NY+VD +HDG SGLDYA S IYDL+LLDIM+P+MDG ++LK+
Sbjct: 6  IEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGLSILKE 65

Query: 61 LRSGAYPLP 69
          +R      P
Sbjct: 66 IRQEGIATP 74


>C4C7S3.1 C4C7S3_9FUSO Response regulator with CheY-like receiver domain
          and winged-helix DNA-binding domain
          Length = 230

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 50/69 (72%)

Query: 1  VEDEVHLTEALTQILKKQNYSVDAVHDGRSGLDYAQSGIYDLLLLDIMMPEMDGFTVLKK 60
          VEDE+ + EA+ Q+L+K NYSVD   DG  GLD A SGIYD ++LDIM+P+ DG +VLK 
Sbjct: 6  VEDEIMIAEAVAQVLRKNNYSVDIAADGEDGLDCALSGIYDAVILDIMLPKRDGLSVLKL 65

Query: 61 LRSGAYPLP 69
          LR    P+P
Sbjct: 66 LRESKIPVP 74


>B0P674.1 B0P674_9FIRM Putative uncharacterized protein
          Length = 224

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 52/69 (75%)

Query: 1  VEDEVHLTEALTQILKKQNYSVDAVHDGRSGLDYAQSGIYDLLLLDIMMPEMDGFTVLKK 60
          VEDE  L +AL QI+++Q Y VDAV+DGR GLDYA SG YD+++LD+M+PE  GF V++ 
Sbjct: 6  VEDERRLADALCQIMREQKYGVDAVYDGRDGLDYAMSGQYDVVVLDVMLPERSGFEVVRA 65

Query: 61 LRSGAYPLP 69
          LR+    +P
Sbjct: 66 LRAQNNAVP 74


>A8ML70.1 A8ML70_ALKOO Two component transcriptional regulator, winged
          helix family
          Length = 224

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 50/69 (72%)

Query: 1  VEDEVHLTEALTQILKKQNYSVDAVHDGRSGLDYAQSGIYDLLLLDIMMPEMDGFTVLKK 60
          VEDE HL EAL QILKK  Y+VD V++G  GLDYA +GIYD+++LDIM+P++ G  +LK 
Sbjct: 6  VEDEKHLAEALLQILKKNKYTVDGVYNGEDGLDYALTGIYDVIILDIMLPKLSGLEILKS 65

Query: 61 LRSGAYPLP 69
          +R      P
Sbjct: 66 IRKKKISTP 74


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 411,760,335
Number of extensions: 13419060
Number of successful extensions: 81773
Number of sequences better than 1.0e-05: 2279
Number of HSP's gapped: 84472
Number of HSP's successfully gapped: 2279
Length of query: 69
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 28
Effective length of database: 2,674,434,588
Effective search space: 74884168464
Effective search space used: 74884168464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)