BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0151.p (151 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCK4.1 B1DCK4_9BACL Two component transcriptional regulator, w... 192 6e-48 A6TPN8.1 A6TPN8_ALKMQ Two component transcriptional regulator, w... 183 5e-45 Q0AUY6.1 Q0AUY6_SYNWW Response regulator receiver protein 157 2e-37 C1I8U7.1 C1I8U7_9CLOT Two component transcriptional regulator 151 1e-35 A9KQS9.1 A9KQS9_CLOPH Two component transcriptional regulator, w... 147 2e-34 >B1DCK4.1 B1DCK4_9BACL Two component transcriptional regulator, winged helix family Length = 225 Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 106/151 (70%), Positives = 119/151 (78%) Query: 1 VIMLTAKGEITDMVAGLDYGADDYIAKPFSSEELMARIRAALRRKGEVIPDDTLKLGDME 60 VIMLTAKGEI D + GLDYGADDY+AKPFS+ EL+ARIRAALRR+GEV+P+D LK GD+E Sbjct: 75 VIMLTAKGEINDKITGLDYGADDYVAKPFSTGELLARIRAALRRRGEVVPEDGLKYGDIE 134 Query: 61 LNTANLRLSVKGXXXXXXXXXXXXXXXXXXRKQAITSKEQIIEKLWGFDSEAEHNNVEVY 120 LNT+NL+L KG RK A+TSKEQIIEKLWGFDS+ EHNNVEVY Sbjct: 135 LNTSNLKLMCKGKELKVILKESELMELLIARKTAVTSKEQIIEKLWGFDSDVEHNNVEVY 194 Query: 121 ISFLRKKLVFLNSEVRINTIRNVGYVLEVTS 151 ISFLRKKLVFL S V+INTIR VGYVLE TS Sbjct: 195 ISFLRKKLVFLQSGVKINTIRGVGYVLEATS 225 >A6TPN8.1 A6TPN8_ALKMQ Two component transcriptional regulator, winged helix family Length = 225 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/151 (61%), Positives = 111/151 (73%) Query: 1 VIMLTAKGEITDMVAGLDYGADDYIAKPFSSEELMARIRAALRRKGEVIPDDTLKLGDME 60 VI+LTAKGEITD V GLD GADDY+AKPF++EEL+ARIRA RRKGEVI D TLK GD++ Sbjct: 75 VILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKGEVILDGTLKYGDVQ 134 Query: 61 LNTANLRLSVKGXXXXXXXXXXXXXXXXXXRKQAITSKEQIIEKLWGFDSEAEHNNVEVY 120 LN + L+LS + R +SKE IIEK+WGFDS+ EHN+VEVY Sbjct: 135 LNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIWGFDSDVEHNHVEVY 194 Query: 121 ISFLRKKLVFLNSEVRINTIRNVGYVLEVTS 151 ISFLRKKL+FL S+V INT+R VGY+LEV S Sbjct: 195 ISFLRKKLLFLTSKVVINTLRGVGYILEVKS 225 >Q0AUY6.1 Q0AUY6_SYNWW Response regulator receiver protein Length = 223 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 102/149 (68%) Query: 1 VIMLTAKGEITDMVAGLDYGADDYIAKPFSSEELMARIRAALRRKGEVIPDDTLKLGDME 60 V++LTAKGE+ D V+GLD GADDY+ KPF++EEL+ARIRA RRKGE+I DDTL + D Sbjct: 75 VMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRRKGEMIVDDTLDIADFT 134 Query: 61 LNTANLRLSVKGXXXXXXXXXXXXXXXXXXRKQAITSKEQIIEKLWGFDSEAEHNNVEVY 120 LN + L K R + SK+++IEK+WGFDSEA++NN+EVY Sbjct: 135 LNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKVWGFDSEADYNNIEVY 194 Query: 121 ISFLRKKLVFLNSEVRINTIRNVGYVLEV 149 ISFLRKKL + S+ I+T+R +GY LEV Sbjct: 195 ISFLRKKLAHIGSQAAISTLRGIGYKLEV 223 >C1I8U7.1 C1I8U7_9CLOT Two component transcriptional regulator Length = 226 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/148 (51%), Positives = 95/148 (64%) Query: 1 VIMLTAKGEITDMVAGLDYGADDYIAKPFSSEELMARIRAALRRKGEVIPDDTLKLGDME 60 VIMLTAK +I D V GLD GADDY+ KPF++EEL+AR+R+ RRKG V+ D+ L GD+ Sbjct: 75 VIMLTAKSQIEDRVRGLDLGADDYLTKPFATEELLARLRSITRRKGNVVNDNILTYGDIS 134 Query: 61 LNTANLRLSVKGXXXXXXXXXXXXXXXXXXRKQAITSKEQIIEKLWGFDSEAEHNNVEVY 120 LN L V R + + SK+ +I KLWGFDSE E+NN+EVY Sbjct: 135 LNLDTYDLDVNNENIRLTLKEFEIIKYFMERPKCVVSKDDLITKLWGFDSEVEYNNIEVY 194 Query: 121 ISFLRKKLVFLNSEVRINTIRNVGYVLE 148 ISF+RKKL +L S V I TIR VGY +E Sbjct: 195 ISFIRKKLTYLKSNVSIVTIRGVGYRME 222 >A9KQS9.1 A9KQS9_CLOPH Two component transcriptional regulator, winged helix family Length = 227 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 94/149 (63%) Query: 1 VIMLTAKGEITDMVAGLDYGADDYIAKPFSSEELMARIRAALRRKGEVIPDDTLKLGDME 60 VI+L+AKGE D V GLD GADDY+ KPF +EEL+AR+RA RRKGE+IP+ L GD+E Sbjct: 75 VILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRRKGEIIPEGILSYGDIE 134 Query: 61 LNTANLRLSVKGXXXXXXXXXXXXXXXXXXRKQAITSKEQIIEKLWGFDSEAEHNNVEVY 120 LN L + K + SK IIEKLWGFD EAE N+VEVY Sbjct: 135 LNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKLWGFDGEAEDNHVEVY 194 Query: 121 ISFLRKKLVFLNSEVRINTIRNVGYVLEV 149 ISFLRKKL L S I TIR +GY+L++ Sbjct: 195 ISFLRKKLAALGSTNTIQTIRGLGYMLKM 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 660,528,916 Number of extensions: 19760385 Number of successful extensions: 107445 Number of sequences better than 1.0e-05: 15199 Number of HSP's gapped: 95739 Number of HSP's successfully gapped: 15199 Length of query: 151 Length of database: 3,060,696,203 Length adjustment: 113 Effective length of query: 38 Effective length of database: 1,996,121,508 Effective search space: 75852617304 Effective search space used: 75852617304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)