BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0147.p (654 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCQ4.1 B1DCQ4_9BACL Putative uncharacterized protein 839 0.0 C0Z8U5.1 C0Z8U5_BREBN Probable ABC transporter permease protein 252 9e-65 A0RK54.1 A0RK54_BACAH ABC transporter, permease component 238 2e-60 C1EX20.1 C1EX20_BACC3 ABC transporter, permease protein 236 6e-60 B7ILZ5.1 B7ILZ5_BACC2 ABC transporter, permease component 233 4e-59 >B1DCQ4.1 B1DCQ4_9BACL Putative uncharacterized protein Length = 655 Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/655 (63%), Positives = 499/655 (76%), Gaps = 1/655 (0%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 MSL +LT+RNVKRNFRLYSIYL SMI GVIIQ+TF+SLMYN DI+DALQNR F+TGV I Sbjct: 1 MSLFDLTIRNVKRNFRLYSIYLMSMIIGVIIQYTFSSLMYNGDIIDALQNRELFRTGVAI 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 AS YANSFFM+QRKKEFGMYLLYGLNERQ+ RMVFYETL+M AISL G Sbjct: 61 ASVVIFLFIIFFILYANSFFMRQRKKEFGMYLLYGLNERQLVRMVFYETLVMGAISLVIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 IL+GGLLSKLFGMLLM+LM Y+QVISLSFP+ ++A GV LL+A+I+S QSYI++NRVQ Sbjct: 121 ILLGGLLSKLFGMLLMNLMQYDQVISLSFPIGAMATAAGVILLIALIVSAQSYILVNRVQ 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 LTELFHAKQK E PVRVS A++A+LL+G+A LI SG+ S WQDY S+IA IGI Sbjct: 181 LTELFHAKQKAEKPVRVSPVMAILAILLIGLALFLICSGQYSAVWQDYGVFSLIATAIGI 240 Query: 241 IAGTFLFFRQLAGWLAQAVSRRKKYYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIML 300 + GT+LFFRQ AGWL Q +SR +KY+EGNT+LWTSSLRFQIRGNTLNLTFISLFSA I++ Sbjct: 241 VGGTYLFFRQFAGWLLQMISRGRKYHEGNTVLWTSSLRFQIRGNTLNLTFISLFSAVIVM 300 Query: 301 LLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLIRSSGHEVRYHLTQEAIVAE 360 LL F+TINYKVQFEAVG N+PN IA+E+L S+ N +ID +I SGHE+ YHL EA+VAE Sbjct: 301 LLCFVTINYKVQFEAVGMNVPNAIAYETLDSAANQKIDEMIEGSGHEINYHLKPEALVAE 360 Query: 361 PVSDMGPAFENPEYYTPYLLLVSEQTYNGLMQERDPKQILDLQGEEAVTLAQGSDFAQSY 420 PV+D G AF+NPEYY P L L++E+ YN L+ R KQ ++L+G EAV L+QGSDF + Y Sbjct: 361 PVTDRGVAFDNPEYYVPGLWLIAEKDYNELIGLRGDKQKVELKGMEAVALSQGSDFPKHY 420 Query: 421 AANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSMVIKPAVLVISDEAYRSLREHA 480 AA P+F VK D E F I+EKKDYAYLGW++DPV SM KP V V+SDEAY L Sbjct: 421 AAGEMPDFTVKADGEKTFTIVEKKDYAYLGWATDPVLSMDKKPPVFVVSDEAYGQLSGGT 480 Query: 481 DKKSFEIYGIADAGRAEELSKQVHAIVT-ETPGAYYSSFADVYSKQIEXXXXXXXXXXXX 539 +KKSFEIYG++DA AE+LSKQVH IV + AYYSSFAD+YSKQIE Sbjct: 481 EKKSFEIYGLSDAKNAEKLSKQVHGIVVAQNKEAYYSSFADIYSKQIESSSLLLFAAGFL 540 Query: 540 XXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKSVIRKQXXXXXXXXXXXGV 599 SVIYFKQLREATDER+QY ILRKMG+ +RQ +SVIRKQ G+ Sbjct: 541 ALIATFALASVIYFKQLREATDERLQYAILRKMGIHNRQFRSVIRKQLLFVFLPPIVLGM 600 Query: 600 CHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVSSTNVYYKIVNENP 654 +SW IIKYYILDSV F L VW I+GV+F IY++FY SS N+YY+I+N+NP Sbjct: 601 LYSWTIIKYYILDSVTDFPELPGIVWSIIGVFFFIYLVFYFSSANLYYRIINQNP 655 >C0Z8U5.1 C0Z8U5_BREBN Probable ABC transporter permease protein Length = 642 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 196/660 (29%), Positives = 316/660 (47%), Gaps = 27/660 (4%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L + +N+++NF Y IY SMI ++I FTF SL Y+ I A + + Sbjct: 1 MTLFSIARKNIRKNFTNYFIYFASMIFSIVIYFTFVSLKYDDSIQLAAEGSNKISSVFSG 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 AS Y+N+FF ++RK E G+Y L G+ ++QI RM+FYE IM I+L G Sbjct: 61 ASVVLMIFVAIFIWYSNAFFTRKRKGEVGLYSLLGVRKKQIGRMLFYENFIMGIIALLIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I +G +LSK F +LM +M Y+ + + S +I TI VF ++ I S+Q Y ++ R + Sbjct: 121 IALGSVLSKFFVAVLMKVMGYDAIANFSVSSEAIIDTITVFSIITFINSLQGYRLIYRFK 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFAL-ISSGKGSVFWQDYATVSM-IAVTI 238 L ELF A Q+ E R S A+++V L+G + L + + S W+ ++ + + + Sbjct: 181 LIELFRADQESEKEPRTSWITAILSVPLIGFGYWLTLQNIFESAIWRKVGIMATPLLILL 240 Query: 239 GIIAGTFLFFRQLAGWLAQAVSRRKK-YYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAA 297 +I GT+L F + L + + KK Y+ G ++ S L ++++GN LT I++ SA Sbjct: 241 TVILGTYLLFGVFSVTLLKRLRNHKKSYWYGINVIGISQLLYRMKGNARTLTIIAVLSAT 300 Query: 298 IMLLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLI-RSSGHEVRYHLTQEA 356 + + Y V + PN + F + S +++ LI + HEV YH T Sbjct: 301 TLTSVGTAYSLYYNNRSTVEKVNPNSMMFIATDSRLTKQVEELISKHLNHEVLYHRTIPV 360 Query: 357 IVAE-PVSDMGPAFENPEYYTPYLLLVSEQTYNGLMQERDPKQILDLQGEEAVTLAQ--G 413 I + SD+ N YT ++S + +N L Q + +L LQ +EAV L Sbjct: 361 IQMDVDTSDLDVG-SNERTYT----VMSNREFNQLTQLQGKDDVLSLQAQEAVLLDPFYM 415 Query: 414 SDFAQSYAANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSMVIKPAVLVISDEAY 473 + Y R P K K E I ++KDY L + + +V+SDE + Sbjct: 416 EGISPQYVGTRLP-LKAK-GGEVIITIKDRKDYNVLNLQT--------VFSTIVVSDELF 465 Query: 474 RSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSSFADVYSKQIEXXXXXX 533 L+ ++ S Y I +A++L+K++ AI+ E A ++SF Y++ +E Sbjct: 466 VRLQHEVNQASLVAYAITQEDQAKQLTKEIQAILPEK--ARFASFYQDYAQGLETSGLLI 523 Query: 534 XXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKSVIRKQXXXXXXX 593 S+IYFKQL EA ++ +Y IL K+GV +++K I KQ Sbjct: 524 FMGGFLGLVFLAATGSIIYFKQLTEAHADKGRYEILYKIGVRKKEIKKTIAKQVLFIFAL 583 Query: 594 XXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVSSTNVYYKIVNEN 653 G+ HS + S L V M +Y +Y +Y + + YYKIV + Sbjct: 584 PLLAGIAHSAVALTPL---SRMLQMNLVVPVVICMAIYTCMYTAYYFLTVHAYYKIVTKT 640 >A0RK54.1 A0RK54_BACAH ABC transporter, permease component Length = 649 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 182/670 (27%), Positives = 322/670 (48%), Gaps = 42/670 (6%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L + +RN++RNF+ Y +Y SMI ++I FTF +L YN + A + + Sbjct: 1 MTLSSIALRNIQRNFKDYFVYFASMIFSIVIYFTFKALQYNSQMEKAAEASKKISGAFQV 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 +S Y+N FF ++RKKE G+Y L G+ +RQI +M+FYE ++M +SL G Sbjct: 61 SSVMLIIFVAVFIIYSNGFFTRKRKKEVGLYSLLGIRKRQIGKMLFYENMLMGLMSLIIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I IG +LSKLF LL+ +M N + PM +I T+ +F ++ + S+Q Y ++ R + Sbjct: 121 IAIGSVLSKLFLELLVSMMGLNLNVHFEVPMDAIIDTVIIFFVIILYTSLQGYRLIYRFK 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 L ELF A+++ E + S A+I+V L+G + L +V + D+ V++ + + Sbjct: 181 LIELFRAEREGEAMPKGSVIMALISVFLIGSGYFLALMYMKAVMYADFMVVAL-YILLAT 239 Query: 241 IAGTFLFFRQLAGW-LAQAVSRRKKYYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIM 299 +AGT+L F + L +A + + +Y G M+ TS L ++I+GN +L I++ SA + Sbjct: 240 VAGTYLLFMFFTVFILKRARNNKSAFYNGMNMVTTSQLLYRIKGNAKSLATIAILSAVTL 299 Query: 300 LLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLIRSSGHEVRYHLTQEAIVA 359 + Y F P ++E + + ++++++ E + H ++ Sbjct: 300 TAVGTSVTMYYNTFTQSKVASPYSYSYEKKDAELDKKVNTIL---AEEKQDHPVKDQFEI 356 Query: 360 EPVSDMGPAFENPEYYTPYLL-----------LVSEQTYNGLMQERDPKQILDLQGEEAV 408 E V G FE + ++L +S+ +N L ++ D + + GE + Sbjct: 357 ETVPVKGK-FEGDK--VDFILNMNYKISEKYQFISQSEFNKLAKKIDVETVNVATGEAFI 413 Query: 409 ---TLAQGSDFAQSYAANRQPEFKVKTDAETAFRI-IEKKDYAYLGWSSDPVRSMVIKPA 464 + +G +F+ Y N+ T F+I E K G ++ + ++ Sbjct: 414 YDSSYMEGHEFSPQYKGNK-----------TVFQIGNEMKALTIQGANNTAITNL--GEL 460 Query: 465 VLVISDEAYRSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSSFADVYSK 524 V+V+SDE Y ++ + + + D ++ L++++ ++ SF D Y+ Sbjct: 461 VVVVSDEMYAQAKQAFGTRVVKNIDVKDEKDSKLLTEKLTKVMPAGESEMVPSFRDFYTG 520 Query: 525 ---QIEXXXXXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKS 581 +E S+IYFKQL EA +R +Y +LRK+GV ++MK Sbjct: 521 FHMGLEGTGLMMFIGMFLGLVFLLATGSIIYFKQLTEANADRERYVVLRKVGVTKQEMKK 580 Query: 582 VIRKQXXXXXXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVS 641 I KQ G+ HS F +K L ++ F + + I GVY +IY+ +Y Sbjct: 581 AIAKQVSFIFAIPLVIGILHSLFALKG--LGNILPFEIMIPLLISI-GVYGVIYIGYYFI 637 Query: 642 STNVYYKIVN 651 + YYKIV+ Sbjct: 638 TVRSYYKIVS 647 >C1EX20.1 C1EX20_BACC3 ABC transporter, permease protein Length = 649 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 181/670 (27%), Positives = 321/670 (47%), Gaps = 42/670 (6%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L + +RN++RNF+ Y +Y SMI ++I FTF +L YN + A + + Sbjct: 1 MTLSSIALRNIQRNFKDYFVYFASMIFSIVIYFTFKALQYNSQMEKAAEASKKISGAFQV 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 +S Y+N FF ++RKKE G+Y L G+ +RQI +M+FYE ++M +SL G Sbjct: 61 SSVMLIIFVAVFIIYSNGFFTRKRKKEVGLYSLLGIRKRQIGKMLFYENMLMGLMSLIIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I IG +LSKLF LL+ +M N + PM +I T+ +F ++ + S+Q Y ++ R + Sbjct: 121 IAIGSVLSKLFLELLVSMMGLNLNVHFEVPMDAIIDTVIIFFVIILYTSLQGYRLIYRFK 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 L ELF A+++ E + S A+I+V L+G + L +V + D+ +++ + + Sbjct: 181 LIELFRAEREGEAMPKGSVIMALISVFLIGSGYFLALMFMKAVKYADFMVIAL-YILLAT 239 Query: 241 IAGTFLFFRQLAGW-LAQAVSRRKKYYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIM 299 + GT+L F + L +A + + +Y G M+ TS L ++I+GN +L IS+ SA + Sbjct: 240 VLGTYLLFMFFTVFVLKRARNNKSSFYNGMNMVTTSQLLYRIKGNAKSLATISILSAVTL 299 Query: 300 LLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLIRSSGHEVRYHLTQEAIVA 359 + Y F P ++E + + ++++++ E + H ++ Sbjct: 300 TAVGTSVTMYYNTFTQSKAFTPYSYSYEKKDAELDKKVNTIL---AEEKQDHPVKDQFEI 356 Query: 360 EPVSDMGPAFENPEYYTPYLL-----------LVSEQTYNGLMQERDPKQILDLQGEEAV 408 E V G FE + ++L +S+ +N L ++ D + + GE + Sbjct: 357 ETVPVKGK-FEGDK--VDFILNMNYKISEKYQFISQSEFNKLAKKIDVETVNVATGEAFI 413 Query: 409 ---TLAQGSDFAQSYAANRQPEFKVKTDAETAFRI-IEKKDYAYLGWSSDPVRSMVIKPA 464 + +G +F+ Y N+ T F+I E K G ++ + ++ Sbjct: 414 YDSSYMEGHEFSPQYKGNK-----------TVFQIGNEMKALTIQGANNTAITNL--GEL 460 Query: 465 VLVISDEAYRSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSSFADVYSK 524 V+V+SDE Y ++ + + + D ++ L++++ ++ SF D Y+ Sbjct: 461 VVVVSDEMYAQAKQAFGTRVVKNIDVKDEKDSKLLTEKLTKVMPAGESEMVPSFRDFYTG 520 Query: 525 ---QIEXXXXXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKS 581 +E S+IYFKQL EA +R +Y +LRK+GV ++MK Sbjct: 521 FHMGLEGTGLMMFIGMFLGLVFLLATGSIIYFKQLTEANADRERYVVLRKVGVTKQEMKK 580 Query: 582 VIRKQXXXXXXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVS 641 I KQ G+ HS F +K L ++ F + + I GVY +IY+ +Y Sbjct: 581 AIAKQVSFIFAIPLVIGILHSLFALKG--LGNILPFEIMIPLLISI-GVYGVIYIGYYFI 637 Query: 642 STNVYYKIVN 651 + YYKIV+ Sbjct: 638 TVRSYYKIVS 647 >B7ILZ5.1 B7ILZ5_BACC2 ABC transporter, permease component Length = 649 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 177/669 (26%), Positives = 322/669 (48%), Gaps = 40/669 (5%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L + +RN++RNF+ Y +Y SMI ++I FTF +L YN + A + + Sbjct: 1 MTLSSIALRNIQRNFKDYFVYFASMIFSIVIYFTFKALQYNSQMEKAAEASKKISGAFQV 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 +S Y+N FF ++RKKE G+Y L G+ +RQI +M+FYE ++M +SL G Sbjct: 61 SSVMLIIFVAVFIIYSNGFFTRKRKKEVGLYSLLGIRKRQIGKMLFYENMLMGLMSLVIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I IG +LSKLF LL+++M N + PM +I T +F ++ + S+Q Y ++ R + Sbjct: 121 IAIGSVLSKLFLELLVNMMGLNLNVHFEVPMAAIIDTAIIFFVIILYTSLQGYRLIYRFK 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 L ELF A+++ E + S A+I+V L+G + L +V + ++ V++ + + Sbjct: 181 LIELFRAEREGEAMPKGSVIMALISVFLIGSGYFLALMFMKAVMYANFMAVALY-ILLAT 239 Query: 241 IAGTFLFFRQLAGW-LAQAVSRRKKYYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIM 299 + GT+L F + L +A + + +Y G M+ TS L ++I+GN +L IS+ SA + Sbjct: 240 VLGTYLLFMFFTVFVLKRARNNKSSFYNGMNMVTTSQLLYRIKGNAKSLATISILSAVTL 299 Query: 300 LLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLIRSSGHEVRYHLTQEAIVA 359 + Y F +P ++E + + +++++ E + H ++ + Sbjct: 300 TAVGTSVTMYYNTFTQSKAAMPYSYSYEKKDAELDKKVNAIF---AEEKKDHPIKDQVEI 356 Query: 360 EPVSDMGPAFENPEYYTPYLL-----------LVSEQTYNGLMQERDPKQILDLQGEEAV 408 E V G FE + ++L +S+ +N L ++ D + + GE + Sbjct: 357 ETVPVKGK-FEGDK--VDFILNMNYTISEKYQFMSQSEFNKLAKKIDAETVNVATGEAFI 413 Query: 409 ---TLAQGSDFAQSYAANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSMVIKPAV 465 + +G +F+ Y N+ F+++ E K G +++ + ++ V Sbjct: 414 YDSSYMEGYEFSPEYKGNKAV-FQIEN---------ETKTLKIQGANNNAITNL--GELV 461 Query: 466 LVISDEAYRSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSSFADVYSK- 524 +V+SDE Y ++ + + + D ++ L++++ ++ F D Y+ Sbjct: 462 VVVSDEMYEQAKQAFGTRIVKNIDVKDERNSKVLTEKLAKVMPTGVSEMAPPFRDFYTGF 521 Query: 525 --QIEXXXXXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKSV 582 +E S+IYFKQL EA+ +R +Y +L K+GV ++MK Sbjct: 522 HMGLEATGLMMFIGLFLGLVFLLATGSIIYFKQLTEASADRDRYIVLHKVGVTKQEMKKA 581 Query: 583 IRKQXXXXXXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVSS 642 I KQ G+ HS F +K L ++ F + + I GVY +IY+ +Y + Sbjct: 582 IAKQVSFIFAIPLVIGILHSLFALKG--LGNILPFEIMIPLLISI-GVYSVIYIGYYFIT 638 Query: 643 TNVYYKIVN 651 YYKIV+ Sbjct: 639 VRSYYKIVS 647 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,205,077,684 Number of extensions: 117324277 Number of successful extensions: 455445 Number of sequences better than 1.0e-05: 1380 Number of HSP's gapped: 452661 Number of HSP's successfully gapped: 1389 Length of query: 654 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 512 Effective length of database: 1,722,912,073 Effective search space: 882130981376 Effective search space used: 882130981376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 135 (56.6 bits)