BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0146.p (248 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCQ3.1 B1DCQ3_9BACL ABC transporter related 399 e-109 A0AKL9.1 A0AKL9_LISW6 Complete genome EC=3.6.3.25 283 1e-74 Q929Q5.1 Q929Q5_LISIN Lin2219 protein 282 2e-74 Q8Y5F0.1 Q8Y5F0_LISMO Lmo2114 protein 281 4e-74 Q4ESN8.1 Q4ESN8_LISMO ABC transporter, ATP-binding protein 281 4e-74 >B1DCQ3.1 B1DCQ3_9BACL ABC transporter related Length = 250 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/248 (76%), Positives = 212/248 (85%) Query: 1 MQTVIQTQNLSKNYGTTAVLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRFTGGE 60 M+TVIQT+NLSK+YG T VLKNIDL +Q GE TA+MGPSGSGKSTLMNVLSTIDRF+GGE Sbjct: 3 METVIQTKNLSKSYGATPVLKNIDLTVQPGELTAIMGPSGSGKSTLMNVLSTIDRFSGGE 62 Query: 61 VWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEEMEDL 120 VW RQFRQERMGFIFQDYNLLDTLT KENILLPLSLR+ K EME+ Sbjct: 63 VWIEGKSLLDMKKKSLRQFRQERMGFIFQDYNLLDTLTVKENILLPLSLRQFKATEMEER 122 Query: 121 LLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSATQML 180 L+PI+ AL+IE +L KYPSE+SGGQKQRVASARAIIT P+IVFADEPTGALDSRSATQ+L Sbjct: 123 LMPIIEALHIEGLLAKYPSEISGGQKQRVASARAIITEPAIVFADEPTGALDSRSATQLL 182 Query: 181 EQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRILETQ 240 EQL LN F TTI+MVTHD YAASYCKRV+FLRDG +V+EIYAG+Q+QK FY+RILETQ Sbjct: 183 EQLVSLNAAFNTTILMVTHDSYAASYCKRVVFLRDGAVVSEIYAGEQSQKTFYERILETQ 242 Query: 241 SLMGGKLR 248 SL+GGKLR Sbjct: 243 SLIGGKLR 250 >A0AKL9.1 A0AKL9_LISW6 Complete genome EC=3.6.3.25 Length = 255 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 136/249 (54%), Positives = 184/249 (73%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTTA----VLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV+Q +N+ K YG+ L+NI + I+ GEFT +MGPSG+GKSTL+NVLSTID+ Sbjct: 1 METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKP 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T GE+ FR++++GFIFQDYNLLDTLT +ENI+LPL+L + V+E Sbjct: 61 TSGEIMISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKRPVKE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ME L I + +I +IL KYPSE+SGGQKQR A++RAIIT+PS+VFADEPTGALDS+SA Sbjct: 121 MEAKLAIISKKFDITDILDKYPSEISGGQKQRTAASRAIITSPSLVFADEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE L +LN +TIMMVTHD +AAS+CKR++F++DG + EIY G +T+K F+ +I Sbjct: 181 TNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIKDGELYTEIYRGTKTRKEFFQKI 240 Query: 237 LETQSLMGG 245 L+ + +GG Sbjct: 241 LDVLAKLGG 249 >Q929Q5.1 Q929Q5_LISIN Lin2219 protein Length = 255 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/249 (54%), Positives = 182/249 (73%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTTA----VLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV+Q +N+ K YG+ L+NI + I+ GEFT +MGPSG+GKSTL+NVLSTID+ Sbjct: 1 METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKP 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T GE+ FR++++GFIFQDYNLLDTLT +ENI+LPL+L + V+E Sbjct: 61 TSGEIMISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKRPVKE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ME+ L I I EIL KYPSE+SGGQKQR A++RAIIT+PS++FADEPTGALDS+SA Sbjct: 121 MEEKLANISEKFGITEILDKYPSEISGGQKQRTAASRAIITSPSLIFADEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE L +LN TIMMVTHD +AAS+CKR++F++DG + EIY G +T+K F+ +I Sbjct: 181 TNLLESLRDLNEQDKATIMMVTHDAFAASFCKRILFIKDGELYTEIYRGTKTRKEFFQKI 240 Query: 237 LETQSLMGG 245 L+ + +GG Sbjct: 241 LDVLAKLGG 249 >Q8Y5F0.1 Q8Y5F0_LISMO Lmo2114 protein Length = 255 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 135/249 (54%), Positives = 183/249 (73%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTTA----VLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV+Q +N+ K YG+ L+NI + I+ GEFT +MGPSG+GKSTL+NVLSTID+ Sbjct: 1 METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKP 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T G++ FR++++GFIFQDYNLLDTLT +ENI+LPL+L + V+E Sbjct: 61 TSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKRPVKE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ME+ L I I EIL KYPSE+SGGQKQR A++RAIIT+PS++FADEPTGALDS+SA Sbjct: 121 MEEKLAIISEKFGITEILDKYPSEISGGQKQRTAASRAIITSPSLIFADEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE L +LN +TIMMVTHD +AAS+CKR++F++DG + EIY G +T+K F+ +I Sbjct: 181 TNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIKDGELYTEIYRGTKTRKEFFQKI 240 Query: 237 LETQSLMGG 245 L+ + +GG Sbjct: 241 LDVLAKLGG 249 >Q4ESN8.1 Q4ESN8_LISMO ABC transporter, ATP-binding protein Length = 255 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 135/249 (54%), Positives = 183/249 (73%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTTA----VLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV+Q +N+ K YG+ L+NI + I+ GEFT +MGPSG+GKSTL+NVLSTID+ Sbjct: 1 METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKP 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T G++ FR++++GFIFQDYNLLDTLT +ENI+LPL+L + V+E Sbjct: 61 TSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKRPVKE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ME+ L I I EIL KYPSE+SGGQKQR A++RAIIT+PS++FADEPTGALDS+SA Sbjct: 121 MEEKLAIISEKFGITEILDKYPSEISGGQKQRTAASRAIITSPSLIFADEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE L +LN +TIMMVTHD +AAS+CKR++F++DG + EIY G +T+K F+ +I Sbjct: 181 TNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIKDGELYTEIYRGTKTRKEFFQKI 240 Query: 237 LETQSLMGG 245 L+ + +GG Sbjct: 241 LDVLAKLGG 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,292,545,475 Number of extensions: 47242346 Number of successful extensions: 452781 Number of sequences better than 1.0e-05: 86114 Number of HSP's gapped: 351169 Number of HSP's successfully gapped: 90762 Length of query: 248 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 116 Effective length of database: 1,817,122,223 Effective search space: 210786177868 Effective search space used: 210786177868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)