BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0142.p
         (74 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6H5.1 B3K6H5_9BACI Thioredoxin                                     104   3e-21
B7DNM3.1 B7DNM3_9BACL Small, acid-soluble spore protein tlp            89   2e-16
Q8ETS4.1 TLP_OCEIH Small, acid-soluble spore protein tlp               88   2e-16
C1PQZ1.1 C1PQZ1_ALIAC Small, acid-soluble spore protein tlp            87   4e-16
C0ZEA9.1 C0ZEA9_BREBN Small acid-soluble spore protein                 83   7e-15

>B3K6H5.1 B3K6H5_9BACI Thioredoxin
          Length = 75

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 60/71 (84%)

Query: 1  MAKPDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKG 60
          MAKPDNR DNVEHLQQ++Q+T++N  EAEDYL EF  EI + E+EQI+ +N RR++SI G
Sbjct: 1  MAKPDNREDNVEHLQQAVQNTIENFREAEDYLQEFGDEIPASEKEQIQDRNARREKSISG 60

Query: 61 FREEVKDEAAH 71
          FREE+KDEAAH
Sbjct: 61 FREEIKDEAAH 71


>B7DNM3.1 B7DNM3_9BACL Small, acid-soluble spore protein tlp
          Length = 77

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 56/69 (81%)

Query: 1  MAKPDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKG 60
          MA PDNRADNVE LQ++I +TM+NLHEAED+L   + E++ K+   + AKNERR+ +I+G
Sbjct: 1  MANPDNRADNVERLQEAIHNTMENLHEAEDFLAAHADEMNPKDVRNLVAKNERRRRAIEG 60

Query: 61 FREEVKDEA 69
          FREE++DEA
Sbjct: 61 FREEIRDEA 69


>Q8ETS4.1 TLP_OCEIH Small, acid-soluble spore protein tlp
          Length = 74

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 57/68 (83%)

Query: 2  AKPDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKGF 61
           KPD+R+DNVE +Q +I HT++NL+E++DY+N  + E+SSKE++++ +KNERRKES+ G 
Sbjct: 4  PKPDDRSDNVEKIQNTIDHTLENLNESKDYINAHAEELSSKEKDELSSKNERRKESVDGL 63

Query: 62 REEVKDEA 69
          R E+KDEA
Sbjct: 64 RSEIKDEA 71


>C1PQZ1.1 C1PQZ1_ALIAC Small, acid-soluble spore protein tlp
          Length = 135

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 54/69 (78%)

Query: 1   MAKPDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKG 60
           M  PDNRADNVE LQ++I +TM+NLHEAED+L   + E++ K+   + AKNERR+ +I G
Sbjct: 59  MPNPDNRADNVERLQEAIHNTMENLHEAEDFLAAHADEMNPKDVRNLVAKNERRRRAIDG 118

Query: 61  FREEVKDEA 69
           FREE++DEA
Sbjct: 119 FREEIRDEA 127


>C0ZEA9.1 C0ZEA9_BREBN Small acid-soluble spore protein
          Length = 72

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 56/72 (77%)

Query: 1  MAKPDNRADNVEHLQQSIQHTMQNLHEAEDYLNEFSSEISSKEREQIEAKNERRKESIKG 60
          MAKPD+R+DN E LQQ I +T +N+ E+EDYL   + EIS++E+  +EAKN RR+ESI+G
Sbjct: 1  MAKPDDRSDNAEKLQQMISNTEENIRESEDYLTAHAGEISAEEKANLEAKNHRREESIEG 60

Query: 61 FREEVKDEAAHS 72
          +R E+KDE+  +
Sbjct: 61 YRAEIKDESTQA 72


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.304    0.120    0.311 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 390,872,300
Number of extensions: 11513839
Number of successful extensions: 68653
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 68567
Number of HSP's successfully gapped: 99
Length of query: 74
Length of database: 3,060,696,203
Length adjustment: 45
Effective length of query: 29
Effective length of database: 2,636,750,528
Effective search space: 76465765312
Effective search space used: 76465765312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 126 (53.1 bits)