BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0136.p
         (123 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0MR16.1 B0MR16_9FIRM Putative uncharacterized protein                165   1e-39
A9KIF9.1 A9KIF9_CLOPH Endoribonuclease L-PSP                          162   1e-38
C0MET2.1 C0MET2_STRS7 Putative uncharacterized protein                161   2e-38
B4U092.1 B4U092_STREM Translation initiation inhibitor                161   2e-38
C0M8E5.1 C0M8E5_STRE4 Putative uncharacterized protein                159   9e-38

>B0MR16.1 B0MR16_9FIRM Putative uncharacterized protein
          Length = 166

 Score =  165 bits (417), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 91/116 (78%)

Query: 4   IVRHDVNEEYAYSGFVEAGDFIFLSFCVGNVGGTVEEQVEGALDDMSSRLQQVGLGLADV 63
           I R+DVNEE+A+ G ++AGDF FL++CVGNVGG++E+QV GA D+M  RL  VGL L +V
Sbjct: 49  IERYDVNEEWAHCGIIKAGDFCFLNYCVGNVGGSIEQQVNGAFDEMEKRLALVGLTLENV 108

Query: 64  VKLDILLRDVWDIPVMETVFKRRFQGKYPARKTISTEFAHVGGPDGLKVQMDGVAY 119
           V++D L RD+WDIPVME V K RF GKYP RK+I TEFAH GG +GLK Q D VAY
Sbjct: 109 VQMDCLFRDIWDIPVMEKVIKERFGGKYPVRKSIQTEFAHFGGENGLKFQADAVAY 164


>A9KIF9.1 A9KIF9_CLOPH Endoribonuclease L-PSP
          Length = 121

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 91/120 (75%)

Query: 1   MDGIVRHDVNEEYAYSGFVEAGDFIFLSFCVGNVGGTVEEQVEGALDDMSSRLQQVGLGL 60
           M  I R+ VNE+ A+S  VEAGDF+FL+FCVGNVG +VE QV GA++ M   L+++GL L
Sbjct: 1   MSNIKRYQVNEDNAWSEMVEAGDFVFLNFCVGNVGQSVEAQVHGAINCMEYNLKKLGLTL 60

Query: 61  ADVVKLDILLRDVWDIPVMETVFKRRFQGKYPARKTISTEFAHVGGPDGLKVQMDGVAYR 120
             VVK+ +LLRD W+IP+METVFK RF G YPAR TI TEFAH GG DGL  Q+D +AYR
Sbjct: 61  EHVVKVTVLLRDAWNIPIMETVFKERFAGNYPARITIQTEFAHCGGADGLHAQIDAIAYR 120


>C0MET2.1 C0MET2_STRS7 Putative uncharacterized protein
          Length = 126

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 91/119 (76%)

Query: 1   MDGIVRHDVNEEYAYSGFVEAGDFIFLSFCVGNVGGTVEEQVEGALDDMSSRLQQVGLGL 60
           M  I R+DVNEE+A++G VEAGDF FL++CVGNVG  +E Q+ GA D+M  RL  VGL L
Sbjct: 1   MKSIRRYDVNEEWAHTGLVEAGDFYFLNYCVGNVGQDIEAQINGAFDEMERRLGLVGLTL 60

Query: 61  ADVVKLDILLRDVWDIPVMETVFKRRFQGKYPARKTISTEFAHVGGPDGLKVQMDGVAY 119
             VV++D L RD+W++PVME + K RF GKYPARK++ T FAH GGPDGL  Q+DGVAY
Sbjct: 61  EAVVQMDCLFRDIWNVPVMEKIIKERFNGKYPARKSLQTAFAHQGGPDGLLFQVDGVAY 119


>B4U092.1 B4U092_STREM Translation initiation inhibitor
          Length = 126

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 91/119 (76%)

Query: 1   MDGIVRHDVNEEYAYSGFVEAGDFIFLSFCVGNVGGTVEEQVEGALDDMSSRLQQVGLGL 60
           M  I R+DVNEE+A++G VEAGDF FL++CVGNVG  +E Q+ GA D+M  RL  VGL L
Sbjct: 1   MKSIRRYDVNEEWAHTGLVEAGDFYFLNYCVGNVGQDIEAQINGAFDEMERRLGLVGLTL 60

Query: 61  ADVVKLDILLRDVWDIPVMETVFKRRFQGKYPARKTISTEFAHVGGPDGLKVQMDGVAY 119
             VV++D L RD+W++PVME + K RF GKYPARK++ T FAH GGPDGL  Q+DGVAY
Sbjct: 61  EAVVQMDCLFRDIWNVPVMEKIIKERFNGKYPARKSLQTAFAHQGGPDGLLFQVDGVAY 119


>C0M8E5.1 C0M8E5_STRE4 Putative uncharacterized protein
          Length = 126

 Score =  159 bits (401), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 90/119 (75%)

Query: 1   MDGIVRHDVNEEYAYSGFVEAGDFIFLSFCVGNVGGTVEEQVEGALDDMSSRLQQVGLGL 60
           M  I R+DVNEE+A++G VEAGDF FL++CVGNVG  +E Q+ GA D+M  RL  VGL L
Sbjct: 1   MKSIRRYDVNEEWAHTGLVEAGDFYFLNYCVGNVGQDIEAQINGAFDEMERRLGLVGLTL 60

Query: 61  ADVVKLDILLRDVWDIPVMETVFKRRFQGKYPARKTISTEFAHVGGPDGLKVQMDGVAY 119
             VV++D L RD+W++PVME + K RF GKYPARK + T FAH GGPDGL  Q+DGVAY
Sbjct: 61  EVVVQMDCLFRDIWNVPVMEKIIKERFNGKYPARKFLQTAFAHQGGPDGLLFQVDGVAY 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 750,796,451
Number of extensions: 27766415
Number of successful extensions: 67964
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 68152
Number of HSP's successfully gapped: 55
Length of query: 123
Length of database: 3,060,696,203
Length adjustment: 89
Effective length of query: 34
Effective length of database: 2,222,225,868
Effective search space: 75555679512
Effective search space used: 75555679512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)