BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0133.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K687.1 B3K687_9BACI Chloramphenicol phosphotransferase family ...   189   5e-47
A9KMB0.1 A9KMB0_CLOPH Chloramphenicol phosphotransferase family ...    96   2e-18
B5GSC0.1 B5GSC0_STRCL Putative uncharacterized protein                 92   1e-17
A9KK09.1 A9KK09_CLOPH Chloramphenicol phosphotransferase family ...    74   3e-12
C4DFI2.1 C4DFI2_9ACTO Chloramphenicol 3-O-phosphotransferase           74   5e-12

>B3K687.1 B3K687_9BACI Chloramphenicol phosphotransferase family protein
          Length = 198

 Score =  189 bits (481), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 101/110 (91%)

Query: 2   GLNVIVDTVIDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLANSQYD 61
           GLNVIVDTVI+NDK FND+LD+  D+PTLFVGV+CSKEELTRREQ+RGDR IGLANSQ+D
Sbjct: 89  GLNVIVDTVIENDKWFNDYLDVLIDYPTLFVGVICSKEELTRREQLRGDRMIGLANSQFD 148

Query: 62  KIYSFTEYDLEVNTGELSPTECAEKILSFIKSDQDYSAFKKLSKREISVS 111
           K+Y F EYDLEVNT EL+PTECAEKIL+FIKSDQDYSAFKKLSKR +S S
Sbjct: 149 KVYCFNEYDLEVNTEELNPTECAEKILNFIKSDQDYSAFKKLSKRNVSSS 198


>A9KMB0.1 A9KMB0_CLOPH Chloramphenicol phosphotransferase family protein
          Length = 192

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 1/110 (0%)

Query: 1   MGLNVIVDTVIDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLANSQY 60
           MG N IVD V  +D   +  L++  D+P LFV V C  EEL RRE+ RGDR+IGLA SQ 
Sbjct: 77  MGYNTIVDDVFVDDYLPSKMLEILHDYPALFVQVTCPLEELQRREKERGDRDIGLAESQL 136

Query: 61  DKIYSFTE-YDLEVNTGELSPTECAEKILSFIKSDQDYSAFKKLSKREIS 109
             +Y   + YD+ V+T   +  ECAEKI++ + +  ++ AFKKL K+ I+
Sbjct: 137 PDLYPIDKTYDITVDTHANTTEECAEKIIALLDNPDNFQAFKKLRKQSIA 186


>B5GSC0.1 B5GSC0_STRCL Putative uncharacterized protein
          Length = 204

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 64/110 (58%)

Query: 2   GLNVIVDTVIDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLANSQYD 61
           G +++VD V+    R  D L +      LFVG+ C  +EL RRE  RGDR  GLA  QY+
Sbjct: 89  GNDIVVDHVLSEPWRLLDCLTVLRPEDVLFVGIRCPLDELVRRELARGDRPPGLAAHQYN 148

Query: 62  KIYSFTEYDLEVNTGELSPTECAEKILSFIKSDQDYSAFKKLSKREISVS 111
            ++S  +YDLE +T   SP ECA++I  F+     ++AF +L  R ++V 
Sbjct: 149 LVHSHGDYDLECDTSTASPHECAQRIKEFLPHRPSHTAFTRLRGRYLTVG 198


>A9KK09.1 A9KK09_CLOPH Chloramphenicol phosphotransferase family protein
          Length = 176

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 56/99 (56%), Gaps = 7/99 (7%)

Query: 1   MGLNVIVDTVIDND------KRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIG 54
           MGLNVIVD V+ N         FN   D   ++P   V V+CS EEL RRE  RGDR+IG
Sbjct: 78  MGLNVIVDHVVLNQDDGKEQNLFNSCRDTLKNYPITSVKVICSLEELKRREVNRGDRDIG 137

Query: 55  LANSQYDK-IYSFTEYDLEVNTGELSPTECAEKILSFIK 92
            A  Q  + +Y    YD+ V+T E+S  ECAE I   IK
Sbjct: 138 NAEWQVKQGLYPLDGYDVVVDTNEMSLQECAENICKTIK 176


>C4DFI2.1 C4DFI2_9ACTO Chloramphenicol 3-O-phosphotransferase
          Length = 194

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%)

Query: 2   GLNVIVDTVIDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLANSQYD 61
           G +V++D V+     F D L +F     +FVGV C   EL RRE  RGDRE G A   + 
Sbjct: 88  GNDVVMDHVLREPAWFTDCLRVFDGIEVVFVGVHCPLPELRRREAARGDREPGRAEFHFT 147

Query: 62  KIYSFTEYDLEVNTGELSPTECAEKIL 88
           +++   +YD+E +T ELSP  CA  I+
Sbjct: 148 RVHVHGDYDIECDTSELSPAACARHII 174


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 638,014,199
Number of extensions: 24069566
Number of successful extensions: 53214
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 53214
Number of HSP's successfully gapped: 15
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)