BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0131.p (224 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein 119 3e-25 C0ZDG0.1 C0ZDG0_BREBN Putative DNA-binding protein 113 1e-23 C0Z4L6.1 C0Z4L6_BREBN Putative uncharacterized protein 108 3e-22 C0Z6X4.1 C0Z6X4_BREBN Putative uncharacterized protein 108 4e-22 C0Z8G0.1 C0Z8G0_BREBN Putative DNA-binding protein 105 2e-21 >C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein Length = 456 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 102/187 (54%) Query: 12 DIIVEMLEMAYRFEDWDKMLNTAGILYSYAQCIYEERQYHKAKKLPVPIVDMERPLVYYF 71 D ++++ + Y W +M A L A IYE+ + ++ ER LV Y+ Sbjct: 200 DALLQLANVCYTIHKWREMDKYADELRELATIIYEDELRRRRSNKASEMLSTERHLVVYY 259 Query: 72 GFSHLMRGIVCQKQGKYDEARDSIYRYAELGWIEDLGVEGEEVAEEFRYLARANLYIVEI 131 G + L++ I +KQ Y+EA+ + YA+L W E L G+ ++FR A ANLY + I Sbjct: 260 GQAFLIKSIALEKQELYEEAKRYVDGYADLSWFEFLDEIGQIEVQKFRSWATANLYTLNI 319 Query: 132 LSGKTELLEGYARFLQDNPEELLPGLGTILQAAVQYGLDVDDLLHTFAEQSDGFRENEDA 191 L G ++++ Y FL D+P+E+L GL TI+ AA QYG +D + FAE D F + +DA Sbjct: 320 LMGNSDVIPDYIHFLSDHPKEVLSGLVTIVSAANQYGFSIDSIFEQFAEHIDRFEDRQDA 379 Query: 192 GNLSHYF 198 +S + Sbjct: 380 IGMSEHM 386 >C0ZDG0.1 C0ZDG0_BREBN Putative DNA-binding protein Length = 466 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 94/164 (57%) Query: 12 DIIVEMLEMAYRFEDWDKMLNTAGILYSYAQCIYEERQYHKAKKLPVPIVDMERPLVYYF 71 D ++ + ++ + + W + A L + Y+++ K ++ ERPLVYY+ Sbjct: 199 DALLNLSKVCFTLQKWSEAETYADELRGLSNIFYQDKLQKCRKNRTTELIKTERPLVYYY 258 Query: 72 GFSHLMRGIVCQKQGKYDEARDSIYRYAELGWIEDLGVEGEEVAEEFRYLARANLYIVEI 131 G +L +G+V Q QG Y ++++ + YA+L W E L EG + E F ARAN Y +E+ Sbjct: 259 GMGYLYKGLVLQMQGAYSQSKEYVQAYADLHWFELLDDEGIRIVERFTVFARANFYTLEV 318 Query: 132 LSGKTELLEGYARFLQDNPEELLPGLGTILQAAVQYGLDVDDLL 175 L G ++++ Y +L + P E+LPGL TI++AA +Y VD++L Sbjct: 319 LMGNEKIIKEYTDYLAEQPVEILPGLVTIMEAANKYHFCVDEVL 362 >C0Z4L6.1 C0Z4L6_BREBN Putative uncharacterized protein Length = 463 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 108/197 (54%) Query: 2 RPSILKSLKPDIIVEMLEMAYRFEDWDKMLNTAGILYSYAQCIYEERQYHKAKKLPVPIV 61 R + ++ + D ++++ + + +W ++ A L A IY E I+ Sbjct: 197 RNRLPENYQLDALLQLANVCFTLHNWKEVERYADELRELATVIYNEEVQRWEIDGVRGIL 256 Query: 62 DMERPLVYYFGFSHLMRGIVCQKQGKYDEARDSIYRYAELGWIEDLGVEGEEVAEEFRYL 121 + ER LV Y+G L++G+ Q Q +Y+EA + YAELGW E E E+FR Sbjct: 257 ETERHLVVYYGQGFLLKGLALQLQERYEEAISYVQAYAELGWFEFRDDLAEMEIEKFRGW 316 Query: 122 ARANLYIVEILSGKTELLEGYARFLQDNPEELLPGLGTILQAAVQYGLDVDDLLHTFAEQ 181 A+AN Y + +L G+TELL Y L +NP E+L G+ TI++ A ++GL VDD++ F+++ Sbjct: 317 AKANNYTLNLLMGRTELLSEYVNHLANNPPEILAGMFTIMETANRFGLSVDDIVERFSKE 376 Query: 182 SDGFRENEDAGNLSHYF 198 F++ +D +L+ + Sbjct: 377 IACFQDYKDPFSLTRHL 393 >C0Z6X4.1 C0Z6X4_BREBN Putative uncharacterized protein Length = 455 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 108/197 (54%) Query: 2 RPSILKSLKPDIIVEMLEMAYRFEDWDKMLNTAGILYSYAQCIYEERQYHKAKKLPVPIV 61 R + ++ + D ++++ + + +W ++ A L A IY E I+ Sbjct: 189 RNRLPENYQLDALLQLANVCFTLHNWKEVERYADELKELATVIYNEEIQRWEIDGVRGIL 248 Query: 62 DMERPLVYYFGFSHLMRGIVCQKQGKYDEARDSIYRYAELGWIEDLGVEGEEVAEEFRYL 121 + ER LV Y+G L++G+ Q Q +Y+EA + YAELGW E E E+FR Sbjct: 249 ETERHLVVYYGQGFLLKGLALQLQERYEEAISYVQAYAELGWFEFRDDLAEMEIEKFRGW 308 Query: 122 ARANLYIVEILSGKTELLEGYARFLQDNPEELLPGLGTILQAAVQYGLDVDDLLHTFAEQ 181 A+AN Y + +L G+TELL Y L +NP E+L G+ TI++ A ++GL VDD++ F+++ Sbjct: 309 AKANNYTLNLLMGRTELLSEYVNHLANNPPEILAGMFTIMETANRFGLSVDDIVERFSKE 368 Query: 182 SDGFRENEDAGNLSHYF 198 F++ +D +L+ + Sbjct: 369 IACFQDYKDPFSLTRHL 385 >C0Z8G0.1 C0Z8G0_BREBN Putative DNA-binding protein Length = 443 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 3/199 (1%) Query: 2 RPSILKSLKPDIIVEMLEMAYRFEDWDKMLNTAGILYSYAQCIY-EERQYHKAKKLPVPI 60 R + ++ + D + ++ + + + W+K L A+ ++ E K K P+ Sbjct: 182 RNRLPENYQLDALFQLARVCFALQKWNKSGEYGDELRLLAETVHMHELDRLKRNKKGEPL 241 Query: 61 VDMERPLVYYFGFSHLMRGIVCQKQGKYDEARDSIYRYAELGWIEDLGVEGEEVAEEFRY 120 ERPLVYY+G HL +G + QG Y+EA+ + YA+LGW E L +G + E F+ Sbjct: 242 -KPERPLVYYYGMGHLYKGAALEMQGLYEEAKQYVRVYADLGWFELLDEDGRKEVERFKV 300 Query: 121 LARANLYIVEILSGKTELLEGYARFLQDNP-EELLPGLGTILQAAVQYGLDVDDLLHTFA 179 A+AN Y +E+LSG T++LE Y +L+ P ELL G+ +I+++A Y VD++L F+ Sbjct: 301 WAKANSYTLEVLSGNTDVLEEYVDYLESLPTNELLAGMISIMKSANTYHFCVDEILDRFS 360 Query: 180 EQSDGFRENEDAGNLSHYF 198 Q F + +A L + Sbjct: 361 SQIASFDQFTEAIGLDRHL 379 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,388,877,029 Number of extensions: 59106033 Number of successful extensions: 127657 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 127653 Number of HSP's successfully gapped: 9 Length of query: 224 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 93 Effective length of database: 1,826,543,238 Effective search space: 169868521134 Effective search space used: 169868521134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)