BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0127.p
         (93 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7Z404.1 A7Z404_BACA2 PtsH                                            103   3e-21
P08877.3 PTHP_BACSU Phosphocarrier protein HPr EC=2.7.11.-            103   3e-21
Q65KB6.1 Q65KB6_BACLD PtsH                                            103   4e-21
O69250.1 PTHP_BACME Phosphocarrier protein HPr EC=2.7.11.-            103   6e-21
Q041Z9.1 Q041Z9_LACGA Phosphotransferase system, HPr-related pro...   101   2e-20

>A7Z404.1 A7Z404_BACA2 PtsH
          Length = 88

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 63/88 (71%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M +KTF VT + GIH RPA++LVQ ASKY+ +VN+EYNG+TVNLKSI+GVMSLG+     
Sbjct: 1  MAQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVMSLGIAKGAE 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKEGLGE 88
                 +D + A+  +EE +K EGLGE
Sbjct: 61 ITISASGADENDALNALEETMKSEGLGE 88


>P08877.3 PTHP_BACSU Phosphocarrier protein HPr EC=2.7.11.-
          Length = 88

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 63/88 (71%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M +KTF VT + GIH RPA++LVQ ASKY+ +VN+EYNG+TVNLKSI+GVMSLG+     
Sbjct: 1  MAQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVMSLGIAKGAE 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKEGLGE 88
                 +D + A+  +EE +K EGLGE
Sbjct: 61 ITISASGADENDALNALEETMKSEGLGE 88


>Q65KB6.1 Q65KB6_BACLD PtsH
          Length = 88

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 63/88 (71%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M +KTF VT + GIH RPA++LVQ ASKY+ ++N+EYNG+TVNLKSI+GVMSLG+     
Sbjct: 1  MAQKTFKVTADSGIHARPATVLVQTASKYDADINLEYNGKTVNLKSIMGVMSLGIAKGAE 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKEGLGE 88
                 +D + A+  +EE +K EGLGE
Sbjct: 61 ITISASGADENDALSALEETMKSEGLGE 88


>O69250.1 PTHP_BACME Phosphocarrier protein HPr EC=2.7.11.-
          Length = 88

 Score =  103 bits (257), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 64/88 (72%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M +KTFTVT + GIH RPA+ LVQAASK+++++N+E+NG+TVNLKSI+GVMSLG+     
Sbjct: 1  MAQKTFTVTADSGIHARPATTLVQAASKFDSDINLEFNGKTVNLKSIMGVMSLGIQKGAT 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKEGLGE 88
                 SD   A+  +E+ + KEGLGE
Sbjct: 61 ITISAEGSDEADALAALEDTMSKEGLGE 88


>Q041Z9.1 Q041Z9_LACGA Phosphotransferase system, HPr-related protein
          Length = 88

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 63/88 (71%)

Query: 1  MVKKTFTVTDELGIHTRPASILVQAASKYNTEVNIEYNGRTVNLKSIVGVMSLGVPXXXX 60
          M K+ F +  E GIH RPA++LVQAASK+N+++N+EYNG++VNLKSI+GVMSLGV     
Sbjct: 1  MEKREFHIVAETGIHARPATLLVQAASKFNSDINLEYNGKSVNLKSIMGVMSLGVGQGAD 60

Query: 61 XXXXXXXSDADKAIEGIEEALKKEGLGE 88
                  DA +AIE I + +KKEGL E
Sbjct: 61 VTITADGDDAKEAIEAIADTMKKEGLAE 88


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.130    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 426,399,657
Number of extensions: 11528603
Number of successful extensions: 20232
Number of sequences better than 1.0e-05: 642
Number of HSP's gapped: 20492
Number of HSP's successfully gapped: 642
Length of query: 93
Length of database: 3,060,696,203
Length adjustment: 62
Effective length of query: 31
Effective length of database: 2,476,593,273
Effective search space: 76774391463
Effective search space used: 76774391463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)