BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0126.p
         (127 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q0TRC2.1 Q0TRC2_CLOP1 Putative membrane protein                        61   3e-08
B1R5V7.1 B1R5V7_CLOPE Putative membrane protein                        61   3e-08
Q8XL73.1 Q8XL73_CLOPE Putative uncharacterized protein CPE1169         61   3e-08
Q0STQ0.1 Q0STQ0_CLOPS Putative membrane protein                        61   3e-08
B1BRC7.1 B1BRC7_CLOPE Putative membrane protein                        61   4e-08

>Q0TRC2.1 Q0TRC2_CLOP1 Putative membrane protein
          Length = 214

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 5   LVGPLINWI----HPFIANMNLADLSLFIKIVIVILANLCFSITYVLLMNFGNGMYAIDA 60
           +VGP I+ I    H F  + +L++ +LF K VIV ++ +  +I +  L++   G+   D 
Sbjct: 85  VVGPTIDAIMGILHRFGLDTSLSNFNLFTKCVIVAVSCIIIAIGFSFLVSTELGVAPNDL 144

Query: 61  VLRYMESKFGLRYAFGRIGADALFLSSGFLFGGIVGIGTVIAFALTGPGTVL----LEKM 116
           V   +  K   +Y + RIG D  FL  G+L  G+VG+GT+IA   TGP         EK+
Sbjct: 145 VPLIIRDKTNFQYRWIRIGLDLSFLVVGYLLAGVVGLGTIIAVLFTGPAIQFFMPPCEKI 204

Query: 117 LFKF 120
           + KF
Sbjct: 205 VHKF 208


>B1R5V7.1 B1R5V7_CLOPE Putative membrane protein
          Length = 214

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 5   LVGPLINWI----HPFIANMNLADLSLFIKIVIVILANLCFSITYVLLMNFGNGMYAIDA 60
           +VGP I+ I    H F  + +L++ +LF K VIV ++ +  +I +  L++   G+   D 
Sbjct: 85  VVGPTIDAIMGILHRFGLDTSLSNFNLFTKCVIVAVSCIIIAIGFSFLVSTELGVAPNDL 144

Query: 61  VLRYMESKFGLRYAFGRIGADALFLSSGFLFGGIVGIGTVIAFALTGPGTVL----LEKM 116
           V   +  K   +Y + RIG D  FL  G+L  G+VG+GT+IA   TGP         EK+
Sbjct: 145 VPLIIRDKTNFQYRWIRIGLDLSFLVVGYLLAGVVGLGTIIAVLFTGPAIQFFMPPCEKI 204

Query: 117 LFKF 120
           + KF
Sbjct: 205 VHKF 208


>Q8XL73.1 Q8XL73_CLOPE Putative uncharacterized protein CPE1169
          Length = 214

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 5   LVGPLINWI----HPFIANMNLADLSLFIKIVIVILANLCFSITYVLLMNFGNGMYAIDA 60
           +VGP I+ I    H F  + +L++ +LF K VIV ++ +  +I +  L++   G+   D 
Sbjct: 85  VVGPTIDAIMGILHRFGLDTSLSNFNLFTKCVIVAVSCIIIAIGFSFLVSTELGVAPNDL 144

Query: 61  VLRYMESKFGLRYAFGRIGADALFLSSGFLFGGIVGIGTVIAFALTGPGTVL----LEKM 116
           V   +  K   +Y + RIG D  FL  G+L  G+VG+GT+IA   TGP         EK+
Sbjct: 145 VPLIIRDKTNFQYRWIRIGLDLSFLVVGYLLAGVVGLGTIIAVLFTGPAIQFFMPPCEKI 204

Query: 117 LFKF 120
           + KF
Sbjct: 205 VHKF 208


>Q0STQ0.1 Q0STQ0_CLOPS Putative membrane protein
          Length = 214

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 5   LVGPLINWI----HPFIANMNLADLSLFIKIVIVILANLCFSITYVLLMNFGNGMYAIDA 60
           +VGP I+ I    H F  + +L++ +LF K VIV ++ +  +I +  L++   G+   D 
Sbjct: 85  VVGPTIDAIMGILHRFGLDTSLSNFNLFTKCVIVAVSCIIIAIGFSFLVSTELGVAPNDL 144

Query: 61  VLRYMESKFGLRYAFGRIGADALFLSSGFLFGGIVGIGTVIAFALTGPGTVL----LEKM 116
           V   +  K   +Y + RIG D  FL  G+L  G+VG+GT+IA   TGP         EK+
Sbjct: 145 VPLIIRDKTNFQYRWIRIGLDLSFLVVGYLLAGVVGLGTIIAVLFTGPAIQFFMPPCEKI 204

Query: 117 LFKF 120
           + KF
Sbjct: 205 VHKF 208


>B1BRC7.1 B1BRC7_CLOPE Putative membrane protein
          Length = 214

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 5   LVGPLINWI----HPFIANMNLADLSLFIKIVIVILANLCFSITYVLLMNFGNGMYAIDA 60
           +VGP I+ I    H F  + +L++ +LF K +IV ++ +  +I +  L++   G+   D 
Sbjct: 85  VVGPTIDAIMGILHRFGLDTSLSNFNLFTKCIIVAVSCIIIAIGFSFLVSTELGVAPNDL 144

Query: 61  VLRYMESKFGLRYAFGRIGADALFLSSGFLFGGIVGIGTVIAFALTGPGTVL----LEKM 116
           V   +  K   +Y + RIG D  FL  G+L  G+VG+GT+IA   TGP         EK+
Sbjct: 145 VPLIIRDKTNFQYRWIRIGLDLSFLVVGYLLAGVVGLGTIIAVLFTGPAIQFFMPPCEKI 204

Query: 117 LFKF 120
           + KF
Sbjct: 205 VHKF 208


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.335    0.151    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 709,014,059
Number of extensions: 26204034
Number of successful extensions: 127888
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 127896
Number of HSP's successfully gapped: 18
Length of query: 127
Length of database: 3,060,696,203
Length adjustment: 92
Effective length of query: 35
Effective length of database: 2,193,962,823
Effective search space: 76788698805
Effective search space used: 76788698805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 126 (53.1 bits)