BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0124.p
         (115 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0CYQ6.1 C0CYQ6_9CLOT Putative uncharacterized protein                125   2e-27
A8RD45.1 A8RD45_9FIRM Putative uncharacterized protein                115   1e-24
Q03GK4.1 Q03GK4_PEDPA Cellobiose-specific PTS system IIA component    102   1e-20
Q184R7.1 Q184R7_CLOD6 PTS system, IIa component                        96   1e-18
C0X122.1 C0X122_ENTFA PTS family lactose-N,N'-diacetylchitobiose...    96   1e-18

>C0CYQ6.1 C0CYQ6_9CLOT Putative uncharacterized protein
          Length = 117

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 80/111 (72%)

Query: 1   MTSEEVAQDAMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNC 60
           M  E+    AM II+ AG+AR  C DAL  I + +FA A EKMK A+ +I  AHRVQT+ 
Sbjct: 5   MIDEKTLTAAMSIIISAGDARLLCRDALNAIAEQNFALANEKMKEASKKITEAHRVQTDA 64

Query: 61  IQKETEGAKGEYSVLFAHAQDTLMTIYSEINIAKRLIDIFESFNQRLTQLE 111
           IQ ET G K EY++LFAHAQDTLMTIYSEINIAK+++ IFES+ +R   LE
Sbjct: 65  IQGETRGEKQEYTLLFAHAQDTLMTIYSEINIAKQMLKIFESWEKRFEALE 115


>A8RD45.1 A8RD45_9FIRM Putative uncharacterized protein
          Length = 119

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 77/102 (75%)

Query: 10  AMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQKETEGAK 69
           AMQ+ILHAG+AR H ++ALK++++ DF  A EKMK A  E+  AH+ QTN IQ+E  G K
Sbjct: 16  AMQMILHAGDARLHISEALKNVKQFDFEAAAEKMKQAEKELQQAHQFQTNVIQEEAGGVK 75

Query: 70  GEYSVLFAHAQDTLMTIYSEINIAKRLIDIFESFNQRLTQLE 111
            E  +LF HAQDTLMTI SE  +A++LIDI ++F+QRL ++E
Sbjct: 76  HELHILFIHAQDTLMTIKSEYELARQLIDIAQAFDQRLKKVE 117


>Q03GK4.1 Q03GK4_PEDPA Cellobiose-specific PTS system IIA component
          Length = 116

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 70/94 (74%)

Query: 8   QDAMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQKETEG 67
           ++ M+II++AG+AR     AL ++  S++  A+E +K AN ++V+AHR+QT  +Q+E EG
Sbjct: 13  KETMEIIINAGDARDFIFKALDEVANSNYQKARELIKKANEKLVVAHRIQTKKLQEEAEG 72

Query: 68  AKGEYSVLFAHAQDTLMTIYSEINIAKRLIDIFE 101
               YSVLF HAQDT+MTI SE N+AKRLI+IFE
Sbjct: 73  DDVTYSVLFTHAQDTVMTIMSEYNLAKRLINIFE 106


>Q184R7.1 Q184R7_CLOD6 PTS system, IIa component
          Length = 117

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 66/104 (63%)

Query: 4   EEVAQDAMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQK 63
           EE+ + AMQIIL AGEAR     AL D+EK D+  A  K+  A   +  AHR QT  IQ 
Sbjct: 10  EELVEVAMQIILRAGEARTEIKHALNDLEKFDYRNADLKLAKAKGFMTEAHRAQTKIIQG 69

Query: 64  ETEGAKGEYSVLFAHAQDTLMTIYSEINIAKRLIDIFESFNQRL 107
           E  G K  +S+LFAHAQDTLMTI+SE+NI   L+ I +S   ++
Sbjct: 70  EAGGEKRAHSLLFAHAQDTLMTIFSELNITMSLVGIVKSIEYKV 113


>C0X122.1 C0X122_ENTFA PTS family
           lactose-N,N'-diacetylchitobiose-beta-glucoside (Lac)
           porter component IIA
          Length = 113

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 74/109 (67%)

Query: 3   SEEVAQDAMQIILHAGEARKHCTDALKDIEKSDFAGAKEKMKLANAEIVIAHRVQTNCIQ 62
           +E++ Q +M I++HAG AR H   AL+ +E++ +  A++++  A  E+V+AH +QT+ +Q
Sbjct: 4   NEQLNQLSMNILIHAGNARDHLVQALEKLEETSYEQAQKELIEARKEVVLAHGIQTDTLQ 63

Query: 63  KETEGAKGEYSVLFAHAQDTLMTIYSEINIAKRLIDIFESFNQRLTQLE 111
            E  G +  YS LF HAQDTLMT  SEI I + L+ +F+ F+Q+L Q E
Sbjct: 64  LEASGEQIRYSTLFCHAQDTLMTAQSEILIGEHLVKLFKKFSQQLCQEE 112


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 540,125,631
Number of extensions: 17393993
Number of successful extensions: 48189
Number of sequences better than 1.0e-05: 896
Number of HSP's gapped: 48210
Number of HSP's successfully gapped: 896
Length of query: 115
Length of database: 3,060,696,203
Length adjustment: 82
Effective length of query: 33
Effective length of database: 2,288,172,973
Effective search space: 75509708109
Effective search space used: 75509708109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)