BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0122.p
         (86 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0CYQ3.1 C0CYQ3_9CLOT Putative uncharacterized protein                102   9e-21
B9YDW6.1 B9YDW6_9FIRM Putative uncharacterized protein                 78   2e-13
Q184R8.1 Q184R8_CLOD6 PTS system, IIb component                        60   9e-08
C0X120.1 C0X120_ENTFA Possible N(Pi)-phosphohistidine--sugar pho...    59   1e-07
Q03GK6.1 Q03GK6_PEDPA Cellobiose-specific PTS system IIB component     58   2e-07

>C0CYQ3.1 C0CYQ3_9CLOT Putative uncharacterized protein
          Length = 85

 Score =  102 bits (255), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 63/72 (87%)

Query: 14 LNMDIIARGEAEIENYIDDIDALLVGPHLAYIVDEIEELTRDSDVKVLLMKPSYYSTLDG 73
          ++MDI AR E+EIENY+D+IDAL+VGPHLAYI+DE+EE   D+DVKV+LMKP YYSTLDG
Sbjct: 14 VDMDIKARSESEIENYVDEIDALMVGPHLAYILDEVEEYIGDNDVKVILMKPEYYSTLDG 73

Query: 74 EAALNDLLSELK 85
            AL+ L++E++
Sbjct: 74 NKALDHLIAEME 85


>B9YDW6.1 B9YDW6_9FIRM Putative uncharacterized protein
          Length = 109

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 51/72 (70%)

Query: 14  LNMDIIARGEAEIENYIDDIDALLVGPHLAYIVDEIEELTRDSDVKVLLMKPSYYSTLDG 73
           L MD+ AR E+ +E+YI+D+DA++VGPHL+Y++++I     +  V  +LMKP YY +LDG
Sbjct: 32  LTMDVQARSESMVEDYIEDVDAIMVGPHLSYLMEDISATCEEYGVTPILMKPDYYKSLDG 91

Query: 74  EAALNDLLSELK 85
            A L  LL  LK
Sbjct: 92  NACLEHLLERLK 103


>Q184R8.1 Q184R8_CLOD6 PTS system, IIb component
          Length = 105

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 42/65 (64%)

Query: 17 DIIARGEAEIENYIDDIDALLVGPHLAYIVDEIEELTRDSDVKVLLMKPSYYSTLDGEAA 76
          DI AR E+EI+ Y+ +ID LL+GPHL Y+ +EI++   + +V V  +  + Y  LDG  A
Sbjct: 35 DIKARSESEIDKYLSEIDCLLLGPHLDYMKEEIQQKANEYNVPVACISKTAYGRLDGAKA 94

Query: 77 LNDLL 81
          L + L
Sbjct: 95 LEEAL 99


>C0X120.1 C0X120_ENTFA Possible N(Pi)-phosphohistidine--sugar
           phosphotransferase EC=2.7.1.69
          Length = 105

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 46/63 (73%)

Query: 20  ARGEAEIENYIDDIDALLVGPHLAYIVDEIEELTRDSDVKVLLMKPSYYSTLDGEAALND 79
           A  E++++  I++ID LL+GPHLAY++++I+E   +  VK +++  + Y TLDGE AL+ 
Sbjct: 40  ATSESQLDERINEIDCLLIGPHLAYMLNDIQEQMAEKKVKAMIIPQAIYGTLDGEKALDL 99

Query: 80  LLS 82
           +++
Sbjct: 100 IMT 102


>Q03GK6.1 Q03GK6_PEDPA Cellobiose-specific PTS system IIB component
          Length = 101

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 14  LNMDIIARGEAEIENYIDDIDALLVGPHLAYIVDEIEELTRDSDVKVLLMKPSYYSTLDG 73
           L+  I AR EAE+ +Y +DID L+VGPHL    + ++    + +V  +LM+P YY+ LDG
Sbjct: 31  LDYKIQARSEAELNDYANDIDVLMVGPHLKSEFNALKNAVPE-NVTPILMEPDYYAILDG 89

Query: 74  EAALNDLLSELK 85
            AA+  + SE++
Sbjct: 90  AAAIKHIQSEVQ 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.139    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 404,347,518
Number of extensions: 13380919
Number of successful extensions: 41880
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 41913
Number of HSP's successfully gapped: 16
Length of query: 86
Length of database: 3,060,696,203
Length adjustment: 56
Effective length of query: 30
Effective length of database: 2,533,119,363
Effective search space: 75993580890
Effective search space used: 75993580890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)