BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0120.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D5J0.1 B1D5J0_9BACL Transcriptional regulator, MerR family          208   1e-52
Q03NJ0.1 Q03NJ0_LACBA Transcriptional regulator, MerR family           99   1e-19
C2C4C5.1 C2C4C5_LISGR Transcriptional activator                        98   2e-19
B3KFC6.1 B3KFC6_9BACI Regulatory protein MerR                          97   6e-19
Q8VN00.1 Q8VN00_LISGR Putative transcriptional activator               96   1e-18

>B1D5J0.1 B1D5J0_9BACL Transcriptional regulator, MerR family
          Length = 119

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 110/119 (92%)

Query: 4   IFTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMS 63
           +FTIG VA + GLNIGAIRFYERKGLL+P  RNEQNNRLYT+ E+NWL+F++CLRETGMS
Sbjct: 1   MFTIGHVAKETGLNIGAIRFYERKGLLEPAARNEQNNRLYTEHELNWLVFIKCLRETGMS 60

Query: 64  VEEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERYYRGENY 122
           VE+IK+YYDMVK GT+TLPERIKLIQ+QKQ LLDDI++KK+QL HLEHKL+RYYRGENY
Sbjct: 61  VEDIKQYYDMVKTGTATLPERIKLIQEQKQKLLDDIEEKKSQLTHLEHKLDRYYRGENY 119


>Q03NJ0.1 Q03NJ0_LACBA Transcriptional regulator, MerR family
          Length = 140

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 74/112 (66%)

Query: 5   FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64
           +TI +VA K+G++  +IR+Y   G+L  V R+E NNR+++DD++ WL  + CLR TGM V
Sbjct: 3   YTIHEVAQKMGISTYSIRYYHDHGMLPFVQRDENNNRVFSDDDLEWLNIIVCLRATGMPV 62

Query: 65  EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERY 116
           E I+ Y D+V+ G +T+PER  +++ Q++  L +I   +  L  +  K++ Y
Sbjct: 63  ERIQHYLDLVQEGETTVPERYDMMKAQQERTLSEISDLQKHLSTINFKVDHY 114


>C2C4C5.1 C2C4C5_LISGR Transcriptional activator
          Length = 127

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 4   IFTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMS 63
           +FTIG  A K G++IG +RFYE KGL+ P  RN    R+YT+++I+ L F+R LR +GM 
Sbjct: 3   LFTIGTTAKKTGISIGTLRFYEEKGLVSPS-RNASKQRIYTEEQISLLTFIRYLRRSGMP 61

Query: 64  VEEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLER 115
           +  I  Y  +   G  TL ER  ++Q QK  +L +ID+K+ +L  +  K+ +
Sbjct: 62  INTIHYYLQLAATGPETLSERQAILQRQKANILSEIDEKQHELAAINFKIAK 113


>B3KFC6.1 B3KFC6_9BACI Regulatory protein MerR
          Length = 147

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 71/113 (62%)

Query: 4   IFTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMS 63
           ++T+ + A   GL   A+RFY  K L+  V RNE N RL+ ++ INWL  ++CL+++GM 
Sbjct: 1   MYTVKEAAQITGLTEHAVRFYTDKALVPSVQRNENNIRLFDEESINWLHGIKCLKQSGMP 60

Query: 64  VEEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERY 116
           ++ IK Y D+   G ST+P+R +L+ + K+A L  +++ K  + HLE K   Y
Sbjct: 61  IDVIKMYIDLCLEGDSTIPQRYRLMMEHKEAALAKLEEAKQHVAHLEEKTALY 113


>Q8VN00.1 Q8VN00_LISGR Putative transcriptional activator
          Length = 127

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 4   IFTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMS 63
           +FTIG  A K G++IG +RFYE KGL+ P  RN    R+YT+++I+   F+R LR +GM 
Sbjct: 3   LFTIGTTAKKTGISIGTLRFYEEKGLVSPS-RNASKQRIYTEEQISLPTFIRYLRRSGMP 61

Query: 64  VEEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLER 115
           +  I  Y  +   G  TL ER  ++Q QK  +L +ID+K+ +L  +  K+ +
Sbjct: 62  INTIHYYLQLAATGPETLSERQAILQRQKANILSEIDEKQHELAAINFKIAK 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 710,890,200
Number of extensions: 26899630
Number of successful extensions: 101152
Number of sequences better than 1.0e-05: 1252
Number of HSP's gapped: 101957
Number of HSP's successfully gapped: 1252
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)