BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0118.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGC8.1 B3KGC8_9BACI Putative uncharacterized protein 241 3e-62 C0Z906.1 C0Z906_BREBN Putative uncharacterized protein ydfS 239 2e-61 P96697.1 P96697_BACSU YdfS protein 231 3e-59 Q65KM4.1 Q65KM4_BACLD YdfS 218 2e-55 B4ADI8.1 B4ADI8_BACPU YdfS 216 1e-54 >B3KGC8.1 B3KGC8_9BACI Putative uncharacterized protein Length = 236 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/232 (51%), Positives = 175/232 (75%), Gaps = 3/232 (1%) Query: 6 ILMRTILSVGLLLLIPRILGKQTLSNMTSNDFVISITLGSLAANLAFNVNLKFTYLVLSI 65 IL+R+I + +LL+I R LGKQTLSNM ++FV ++ LG++AAN AFN ++ +L++S+ Sbjct: 7 ILLRSISAFVILLIITRFLGKQTLSNMNFHEFVTAVILGAIAANFAFNEKMEVIHLLISL 66 Query: 66 VVITATSFLLSFIALKSRRLRSWISGSPTVLIEEGKIMEANMRKIRYTMDSLDQALRKKE 125 V T TS+ LS I +K+R+ R W G+P+V+IE GKI+E N+RK + T+D+++Q LR+K+ Sbjct: 67 AVFTFTSYFLSKIVVKNRKFRMWAEGTPSVVIEGGKILEENLRKNKLTLDTINQMLRQKD 126 Query: 126 IFNIEEVDYAVLEDNGQVSVLKKEAYQSVTKQDLGLALKP-QVFPVELIMDGKLVEDNLK 184 IF+I EV+Y VLE NG++SV+KK+ YQ+VT +D+ LK Q FP+ELIMDG+L+E+NLK Sbjct: 127 IFDISEVEYGVLEINGKISVMKKKEYQNVTLKDMKKGLKGNQQFPIELIMDGQLLENNLK 186 Query: 185 QHGLTREWLEKELDKKQKGKTLADVFYAVKGTQQQLVFDFYEDGLQQPLDRE 236 + L+ EW++++L K + K +ADVFYAVKGT QL D Y D +Q P+D E Sbjct: 187 INDLSPEWIKEKL--KVRNKEIADVFYAVKGTDGQLYIDLYRDKIQHPVDVE 236 >C0Z906.1 C0Z906_BREBN Putative uncharacterized protein ydfS Length = 236 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 174/233 (74%), Gaps = 3/233 (1%) Query: 5 EILMRTILSVGLLLLIPRILGKQTLSNMTSNDFVISITLGSLAANLAFNVNLKFTYLVLS 64 E++ R +L+ ++++I RILGKQT++ MT +DFV +ITLG+L ANLAFN K ++++++ Sbjct: 6 EVIARALLAFAIMMIITRILGKQTIAQMTYHDFVAAITLGALTANLAFNNMAKISHMLVT 65 Query: 65 IVVITATSFLLSFIALKSRRLRSWISGSPTVLIEEGKIMEANMRKIRYTMDSLDQALRKK 124 ++ ++LL ++LK+R++R W SG PTV+I+EG+I+E NMRK + ++D+L+Q LR++ Sbjct: 66 LLTFGGIAYLLMILSLKNRKMRKWFSGQPTVVIQEGRILEDNMRKQKLSLDTLNQELRER 125 Query: 125 EIFNIEEVDYAVLEDNGQVSVLKKEAYQSVTKQDLGLAL-KPQVFPVELIMDGKLVEDNL 183 IFNIEEV YAVLE NG++SVL+K + VT+ DL L + K Q+FP+ELIMDG++++ NL Sbjct: 126 NIFNIEEVQYAVLELNGEISVLRKPQFLPVTRGDLKLKMGKRQIFPIELIMDGQIIQSNL 185 Query: 184 KQHGLTREWLEKELDKKQKGKTLADVFYAVKGTQQQLVFDFYEDGLQQPLDRE 236 +QH LT EWL ++ K KG ++ +V YAV + Q+ FD YED + P+D+E Sbjct: 186 RQHSLTIEWLLSQVGK--KGLSVEEVNYAVISSNGQIYFDPYEDRMSNPIDKE 236 >P96697.1 P96697_BACSU YdfS protein Length = 235 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 116/233 (49%), Positives = 172/233 (73%), Gaps = 3/233 (1%) Query: 5 EILMRTILSVGLLLLIPRILGKQTLSNMTSNDFVISITLGSLAANLAFNVNLKFTYLVLS 64 E+++RT+ S GLLL+ RILGKQT+S MT DF+ +ITLG++AA LA+N ++K + +S Sbjct: 5 EVVIRTVASFGLLLIAERILGKQTISQMTIFDFIAAITLGAIAAGLAYNTSIKPHNMAIS 64 Query: 65 IVVITATSFLLSFIALKSRRLRSWISGSPTVLIEEGKIMEANMRKIRYTMDSLDQALRKK 124 + T FL+SF+++K+R+LR + +G PTVLI+ GKI+E+NMRK+RYT+D L+Q LR+K Sbjct: 65 FSIFVLTIFLISFLSIKNRKLRKFFAGDPTVLIQNGKILESNMRKMRYTLDYLNQQLREK 124 Query: 125 EIFNIEEVDYAVLEDNGQVSVLKKEAYQSVTKQDLGLAL-KPQVFPVELIMDGKLVEDNL 183 EIFNIEEV +A+LE NGQ++VL+K ++ VTKQDL +A+ + Q P+ELIMDG+++E+NL Sbjct: 125 EIFNIEEVLFAILETNGQLTVLRKPQFRHVTKQDLMIAVNQEQRLPIELIMDGEIIENNL 184 Query: 184 KQHGLTREWLEKELDKKQKGKTLADVFYAVKGTQQQLVFDFYEDGLQQPLDRE 236 KQ+ LT WL +EL K+ + + YAV + D Y+D + P+D+E Sbjct: 185 KQNRLTESWLLEELRKRD--IKVKETVYAVLLGNGDIYVDQYKDHISVPMDKE 235 >Q65KM4.1 Q65KM4_BACLD YdfS Length = 236 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 165/235 (70%), Gaps = 3/235 (1%) Query: 3 YAEILMRTILSVGLLLLIPRILGKQTLSNMTSNDFVISITLGSLAANLAFNVNLKFTYLV 62 + E+++R+IL+ G+LL+ R+LGKQT+S M DF+ SITLG++ ANLAFN +LK ++V Sbjct: 4 HIEVILRSILAFGILLVGSRLLGKQTISQMNIFDFIASITLGAITANLAFNTSLKIHHMV 63 Query: 63 LSIVVITATSFLLSFIALKSRRLRSWISGSPTVLIEEGKIMEANMRKIRYTMDSLDQALR 122 L+ + ++I+L S++ R + +G PTV+I+ GK++E NMRK+RYT+D L+Q LR Sbjct: 64 LAFFIFVFVILATAYISLWSQKGRKFFAGDPTVVIQNGKVLEHNMRKMRYTIDYLNQQLR 123 Query: 123 KKEIFNIEEVDYAVLEDNGQVSVLKKEAYQSVTKQDLGLALKPQ-VFPVELIMDGKLVED 181 +K +F IEEV YA++E NG ++VLKK +++VTK+DL +A P+ P+ELIMDGK+ + Sbjct: 124 EKNVFKIEEVLYAIVETNGTLTVLKKPQFRNVTKKDLWVATTPEGKLPIELIMDGKMKNE 183 Query: 182 NLKQHGLTREWLEKELDKKQKGKTLADVFYAVKGTQQQLVFDFYEDGLQQPLDRE 236 NLK + LT+ WL+ E+ K++G + +VFYAV + D YED + D+E Sbjct: 184 NLKDNQLTQAWLQSEM--KKRGLSTDEVFYAVLSPDGNIYIDTYEDHIHSSFDKE 236 >B4ADI8.1 B4ADI8_BACPU YdfS Length = 236 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 172/236 (72%), Gaps = 3/236 (1%) Query: 2 NYAEILMRTILSVGLLLLIPRILGKQTLSNMTSNDFVISITLGSLAANLAFNVNLKFTYL 61 ++ E+++RT+ + +L R+LGKQT++ M DF+ +I+LGS+AA+LAFN L F + Sbjct: 3 DHIEVILRTMFAFAILFGGARLLGKQTIAQMNIFDFIAAISLGSIAASLAFNTTLPFHHT 62 Query: 62 VLSIVVITATSFLLSFIALKSRRLRSWISGSPTVLIEEGKIMEANMRKIRYTMDSLDQAL 121 +S V + +++S IAL+SR+LR +++G PT++I+ GKI+E NM+ +RYT+D L+Q L Sbjct: 63 TISFVTLVMIIYVISLIALRSRKLRGFMAGKPTLVIQNGKILEENMKGMRYTLDYLNQQL 122 Query: 122 RKKEIFNIEEVDYAVLEDNGQVSVLKKEAYQSVTKQDLGLALKPQVF-PVELIMDGKLVE 180 R+K+IF+I EV++A++E +G +SV K ++++VT++DL L +K + + P+E+IMDGKL+ Sbjct: 123 REKDIFDISEVEFAMIETDGHMSVKKYPSFENVTRKDLQLYMKAEGYMPIEVIMDGKLIL 182 Query: 181 DNLKQHGLTREWLEKELDKKQKGKTLADVFYAVKGTQQQLVFDFYEDGLQQPLDRE 236 N++++ LT EW+++EL K+Q +L D+ YAV+ + L D Y+D + P+D+E Sbjct: 183 KNIQENQLTVEWIDEELKKRQ--LSLKDIVYAVRSSNGSLYIDTYDDHIHSPIDQE 236 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,245,705,980 Number of extensions: 47065175 Number of successful extensions: 155306 Number of sequences better than 1.0e-05: 1002 Number of HSP's gapped: 154467 Number of HSP's successfully gapped: 1002 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)