BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0116.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8C5.1 B3K8C5_9BACI Regulatory protein ArsR                         132   1e-29
C2ZRH1.1 C2ZRH1_BACCE Transcriptional regulator, TrmB                 130   3e-29
C2Z9Q3.1 C2Z9Q3_BACCE Transcriptional regulator, TrmB                 130   3e-29
C3A7S4.1 C3A7S4_BACMY Transcriptional regulator, TrmB                 130   3e-29
A9VKC3.1 A9VKC3_BACWK Transcriptional regulator, TrmB                 130   5e-29

>B3K8C5.1 B3K8C5_9BACI Regulatory protein ArsR
          Length = 109

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 77/91 (84%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           +V +L+ GPL+VGEIAE+L +RQPQASKHL+VLL+AGLVEV A ANRRNY LR+EP + L
Sbjct: 17  IVNLLQKGPLTVGEIAERLDIRQPQASKHLKVLLDAGLVEVRADANRRNYMLRSEPFQEL 76

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGKE 91
           D WL+ YR++WNER+DNLD+YL  LQS  K+
Sbjct: 77  DRWLDNYRRIWNERYDNLDDYLEKLQSDMKK 107


>C2ZRH1.1 C2ZRH1_BACCE Transcriptional regulator, TrmB
          Length = 114

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 78/90 (86%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           +VE+L+DGPL+VGEIAE LGLRQPQ SKHL+VL + G+VEV+A+ANRR Y+LR EP +AL
Sbjct: 24  IVELLRDGPLTVGEIAEHLGLRQPQTSKHLKVLSDTGIVEVQAEANRRIYKLRPEPFQAL 83

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGK 90
           D W+++++++  ERFDNLDEYL+ LQ++ K
Sbjct: 84  DCWVQSFKRVMEERFDNLDEYLKELQNKEK 113


>C2Z9Q3.1 C2Z9Q3_BACCE Transcriptional regulator, TrmB
          Length = 114

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 78/90 (86%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           +VE+L+DGPL+VGEIAE LGLRQPQ SKHL+VL + G+VEV+A+ANRR Y+LR EP +AL
Sbjct: 24  IVELLRDGPLTVGEIAEHLGLRQPQTSKHLKVLSDTGIVEVQAEANRRIYKLRPEPFQAL 83

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGK 90
           D W+++++++  ERFDNLDEYL+ LQ++ K
Sbjct: 84  DCWVQSFKRVMEERFDNLDEYLKELQNKEK 113


>C3A7S4.1 C3A7S4_BACMY Transcriptional regulator, TrmB
          Length = 117

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 78/90 (86%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           +VE+L+DGPL+VGEIAE LGLRQPQ SKHL+VL + G+VEV+A+ANRR Y+LR EP +AL
Sbjct: 27  IVELLRDGPLTVGEIAEHLGLRQPQTSKHLKVLSDTGIVEVQAEANRRIYKLRPEPFQAL 86

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGK 90
           D W+++++++  ERFDNLDEYL+ LQ++ K
Sbjct: 87  DCWVQSFKRVMEERFDNLDEYLKELQNKEK 116


>A9VKC3.1 A9VKC3_BACWK Transcriptional regulator, TrmB
          Length = 114

 Score =  130 bits (326), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 77/90 (85%)

Query: 1   MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60
           +VE+L+DGPL+VGEIAE LGLRQPQ SKHL+VL + G+VEV+A+ANRR Y+LR EP +AL
Sbjct: 24  IVELLRDGPLTVGEIAEHLGLRQPQTSKHLKVLSDTGIVEVQAEANRRIYKLRPEPFQAL 83

Query: 61  DAWLEAYRKMWNERFDNLDEYLRHLQSQGK 90
           D W+++++++  ERFDNLDEYL+ LQ + K
Sbjct: 84  DCWVQSFKRVMEERFDNLDEYLKELQKKEK 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 537,846,712
Number of extensions: 17614549
Number of successful extensions: 92188
Number of sequences better than 1.0e-05: 432
Number of HSP's gapped: 92193
Number of HSP's successfully gapped: 432
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)