BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0112.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3FJU1.1 C3FJU1_BACTB Transcriptional regulator, AsnC                 128   1e-28
C3DC01.1 C3DC01_BACTU Transcriptional regulator, AsnC                 128   1e-28
C0ZIX3.1 C0ZIX3_BREBN Transcriptional regulator                       112   1e-23
B5UY75.1 B5UY75_BACCE Transcriptional regulator, AsnC family          105   9e-22
C3HAD4.1 C3HAD4_BACTU Transcriptional regulator, AsnC                 105   9e-22

>C3FJU1.1 C3FJU1_BACTB Transcriptional regulator, AsnC
          Length = 151

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 80/102 (78%)

Query: 1   MEENGVISGYRTIISPEKIGKHAAAYMLFHSRECTAFMDFCRSSPEVVECYRISGEHNYL 60
           +EE G+IS YRTI++ +KIGK   A++LF + +C  F+D+C ++P+VVEC+RISGE+NYL
Sbjct: 41  LEEQGIISNYRTIVANDKIGKSTVAFILFRTTQCLNFVDYCENTPQVVECHRISGEYNYL 100

Query: 61  LKVMTDSTQALEQFGNECDKYGNYTILIVMSSPIDHKYLIPS 102
           +KV+ +ST+ LE F NE  K+GN T LI +SSPI +K LIPS
Sbjct: 101 IKVVVESTKELELFENESMKFGNSTTLISLSSPIAYKPLIPS 142


>C3DC01.1 C3DC01_BACTU Transcriptional regulator, AsnC
          Length = 151

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 80/102 (78%)

Query: 1   MEENGVISGYRTIISPEKIGKHAAAYMLFHSRECTAFMDFCRSSPEVVECYRISGEHNYL 60
           +EE G+IS YRTI++ +KIGK   A++LF + +C  F+D+C ++P+VVEC+RISGE+NYL
Sbjct: 41  LEEQGIISNYRTIVANDKIGKSTVAFILFRTTQCLNFVDYCENTPQVVECHRISGEYNYL 100

Query: 61  LKVMTDSTQALEQFGNECDKYGNYTILIVMSSPIDHKYLIPS 102
           +KV+ +ST+ LE F NE  K+GN T LI +SSPI +K LIPS
Sbjct: 101 IKVVVESTKELELFENESMKFGNSTTLISLSSPIAYKPLIPS 142


>C0ZIX3.1 C0ZIX3_BREBN Transcriptional regulator
          Length = 146

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 71/100 (71%)

Query: 1   MEENGVISGYRTIISPEKIGKHAAAYMLFHSRECTAFMDFCRSSPEVVECYRISGEHNYL 60
           +EE G+I+GY   IS EK+GKH  A+++F +++C AF+DFC+ SPEV + YRISGE+NY+
Sbjct: 41  LEEQGIITGYHASISQEKLGKHTTAFVMFRTKQCAAFIDFCKQSPEVTDMYRISGEYNYM 100

Query: 61  LKVMTDSTQALEQFGNECDKYGNYTILIVMSSPIDHKYLI 100
           LKV+T ST+ L  F      +G    LIV+++P + K ++
Sbjct: 101 LKVVTRSTEELVAFSERTGDFGFSYTLIVLTAPFEQKMML 140


>B5UY75.1 B5UY75_BACCE Transcriptional regulator, AsnC family
          Length = 146

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 69/99 (69%)

Query: 1   MEENGVISGYRTIISPEKIGKHAAAYMLFHSRECTAFMDFCRSSPEVVECYRISGEHNYL 60
           +EE GVI  YRTI++P+++ KH  A++L   R+C  +  F    P+VVEC+RI+G ++YL
Sbjct: 41  LEEQGVIISYRTIVNPKELKKHITAFVLMEPRDCNKYKKFAMEHPDVVECHRIAGLYSYL 100

Query: 61  LKVMTDSTQALEQFGNECDKYGNYTILIVMSSPIDHKYL 99
            KV+T+S   LE + N C +YG  T LIV+SSP++HK L
Sbjct: 101 TKVVTESVHTLEDYINLCLEYGKPTTLIVLSSPVEHKSL 139


>C3HAD4.1 C3HAD4_BACTU Transcriptional regulator, AsnC
          Length = 146

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 71/106 (66%)

Query: 1   MEENGVISGYRTIISPEKIGKHAAAYMLFHSRECTAFMDFCRSSPEVVECYRISGEHNYL 60
           +EE GVI  YRTI++P+++ KH  A++L   R+C  +  F    P+VVEC+RI+G ++YL
Sbjct: 41  LEEQGVIISYRTIVNPKELKKHITAFVLMEPRDCNKYKKFAMEHPDVVECHRIAGLYSYL 100

Query: 61  LKVMTDSTQALEQFGNECDKYGNYTILIVMSSPIDHKYLIPSLEGA 106
            KV+T+S   LE + N C +YG  T LIV+SSP++HK L    E +
Sbjct: 101 TKVVTESVHTLENYINLCLEYGKPTTLIVLSSPVEHKSLFTESEKS 146


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 681,095,777
Number of extensions: 23763980
Number of successful extensions: 46136
Number of sequences better than 1.0e-05: 259
Number of HSP's gapped: 47852
Number of HSP's successfully gapped: 259
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)