BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0109.p
         (130 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8G6.1 B3K8G6_9BACI Tetratricopeptide TPR_2 repeat protein          117   3e-25
C0Z9X1.1 C0Z9X1_BREBN Putative uncharacterized protein                102   2e-20
B0P998.1 B0P998_9FIRM Putative uncharacterized protein                 94   5e-18
C3X3T1.1 C3X3T1_OXAFO Putative uncharacterized protein                 91   2e-17
C3WW50.1 C3WW50_9FUSO Tetratricopeptide repeat family protein          86   7e-16

>B3K8G6.1 B3K8G6_9BACI Tetratricopeptide TPR_2 repeat protein
          Length = 290

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 74/105 (70%)

Query: 21  IVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMKTADKGKKDPLWHFRVGYAHY 80
           IVD I E P    D  L +HLGRALNNL RY+ A++ F+   ++GK DPLWH+R+G A+Y
Sbjct: 21  IVDAITEIPEEERDYALISHLGRALNNLERYEEAVEQFLSIQEEGKDDPLWHYRIGLAYY 80

Query: 81  YLDELQDAIREFEIAHKLDPEDEDTIQFLEWSRKEAAEAPADKES 125
           YLD  +DA R FE+A  L+P DEDT++FLEW R + A  PA+K S
Sbjct: 81  YLDRYEDARRAFEVADHLEPGDEDTLEFLEWIRNKTAPKPAEKSS 125


>C0Z9X1.1 C0Z9X1_BREBN Putative uncharacterized protein
          Length = 459

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 74/116 (63%)

Query: 1   MREELIAQLNKWHEEDKYQEIVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMK 60
           M + LI QLN+WHEED+ Q IVD +   P    + E  + LGRA NNLG Y  AL    K
Sbjct: 1   MDQVLIEQLNRWHEEDEQQRIVDLLLTVPEEEREYEAVSRLGRAYNNLGLYDEALNQLKK 60

Query: 61  TADKGKKDPLWHFRVGYAHYYLDELQDAIREFEIAHKLDPEDEDTIQFLEWSRKEA 116
            A+ G++DP+WHFRVG+A Y+L   ++A   F  + KL+  +++T  +L+WS ++A
Sbjct: 61  IAEAGQQDPIWHFRVGFALYHLKRYEEATEAFRTSDKLETGNQNTESWLKWSLQKA 116


>B0P998.1 B0P998_9FIRM Putative uncharacterized protein
          Length = 490

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 64/109 (58%)

Query: 1   MREELIAQLNKWHEEDKYQEIVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMK 60
           M +E+  Q + WHE D+YQ+IVD +        D E  + L RA NNLGRY+ A    + 
Sbjct: 1   MDQEMKKQFDLWHEADEYQKIVDAVLAIDEKERDYEAVSQLARAYNNLGRYQKAAVQLLS 60

Query: 61  TADKGKKDPLWHFRVGYAHYYLDELQDAIREFEIAHKLDPEDEDTIQFL 109
             ++GK D LWH+R+GY++YYLD  +DA R F  A  L P DED    L
Sbjct: 61  IQEEGKNDYLWHYRMGYSYYYLDRARDAARCFRQALALHPGDEDCADML 109


>C3X3T1.1 C3X3T1_OXAFO Putative uncharacterized protein
          Length = 682

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 62/117 (52%)

Query: 2   REELIAQLNKWHEEDKYQEIVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMKT 61
           R+ LI +LN++H E  + +IVD I   P      EL   L RA NNLG Y  A       
Sbjct: 209 RKTLIGRLNRYHLEKAFSKIVDEIMAVPEAERGYELTVRLARAFNNLGDYAQAALTLKSV 268

Query: 62  ADKGKKDPLWHFRVGYAHYYLDELQDAIREFEIAHKLDPEDEDTIQFLEWSRKEAAE 118
             +G+ DP WHF +G A YYL +   A  EFE   +LDPED D  Q+L+W  +   E
Sbjct: 269 ESQGENDPGWHFHLGAACYYLGKKTQAKTEFERVLELDPEDGDAWQYLDWCCQATGE 325


>C3WW50.1 C3WW50_9FUSO Tetratricopeptide repeat family protein
          Length = 665

 Score = 86.3 bits (212), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 6/131 (4%)

Query: 1   MREELIAQLNKWHEEDKYQEIVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMK 60
           M   LI  LN  H+E K+QEI+D+I+  P+  ++ E+   L RA NN+  Y+ AL+  +K
Sbjct: 1   MENNLIETLNILHKEGKHQEIIDKIETLPSEEMNPEIIGILARAYNNVDNYEKALE-LLK 59

Query: 61  TADKGKKDP-LWHFRVGYAHYYLDELQDAIREFEIAHKLDPEDEDTIQFLEWSRKEAAEA 119
           + +K +KD  +W++R+GY++YYLD   +A + F  A ++DP D D+  FL W  +E    
Sbjct: 60  SIEKYEKDTNVWNYRIGYSYYYLDNYLEAKKHFLKAIEIDPTDSDSHLFLCWIYQEL--- 116

Query: 120 PADKESDEEEE 130
             DKE D  E+
Sbjct: 117 -TDKEKDNSEK 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 829,900,747
Number of extensions: 33003387
Number of successful extensions: 102999
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 103018
Number of HSP's successfully gapped: 50
Length of query: 130
Length of database: 3,060,696,203
Length adjustment: 95
Effective length of query: 35
Effective length of database: 2,165,699,778
Effective search space: 75799492230
Effective search space used: 75799492230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)