BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0108.p (412 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0GI10.1 C0GI10_9FIRM Sensor protein EC=2.7.13.3 246 4e-63 C2XWL3.1 C2XWL3_BACCE Putative uncharacterized protein 243 2e-62 C2SU58.1 C2SU58_BACCE Putative uncharacterized protein 243 3e-62 C3A8I1.1 C3A8I1_BACMY Putative uncharacterized protein 241 8e-62 A9VMN3.1 A9VMN3_BACWK Sensor protein EC=2.7.13.3 241 1e-61 >C0GI10.1 C0GI10_9FIRM Sensor protein EC=2.7.13.3 Length = 423 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 155/399 (38%), Positives = 222/399 (55%), Gaps = 42/399 (10%) Query: 34 LLVFMSAVTMILCIAKPIKLEMGFIYDLRYIPFILVALFGGYRSVFPLYLIMNIYRFYLG 93 L+ +S V +ILC+ PI G I+DLR +P + L+GG + L + YRFY+G Sbjct: 41 LICAISTVLIILCMTFPIPFFDGHIFDLRQVPIVTGMLYGGPKVALLLLGVFTSYRFYIG 100 Query: 94 GAGTFPSFLFSTAVLLLVPYLSKRFIKLSSKRRILWAVVIAALTMGLYLINLGLITDKLD 153 G G + + L + + + Y+ F KL S + + +IA +LG+I Sbjct: 101 GEGFYGAVLTNVLLFASLLYIRHYFNKLKSIEQRVKLSIIAG--------SLGII----- 147 Query: 154 QQFWILTVYALLTHGAVM-------------SXXXXXXXXXXXXXKNR------DRILQS 194 W+ V A+L +G M KN+ + + Sbjct: 148 ---WMTIVIAIL-YGERMVEPFIIFLLIFLIIQCLATAISVYFFEKNKLDTSINKELKKL 203 Query: 195 ERLNVVSELAASVSHEIRNPLTVTSGFLQLLNKSNTITPEEK--GYVELSLLELNRAEKI 252 ERL VSE+AAS+SHE+RNPLT GFLQLL S PEEK Y+EL L EL+RA I Sbjct: 204 ERLETVSEIAASISHEVRNPLTTIGGFLQLLKDSK--LPEEKRQTYIELCLEELDRATNI 261 Query: 253 VSDYLSFAKPQSDNMVCSNMKAEAEYTKNIIMPYATIHKVDVQFNFNNTLNKCYDKNQIQ 312 +++YLS AKP DNM + E EY ++I PYAT++ V+V+ + ++++ + ++ Sbjct: 262 ITNYLSLAKPSLDNMKVLELNKEIEYVISVIEPYATLNGVEVKLSQLDSMHVLGESQKLH 321 Query: 313 QCLINLYKNGIEAMREKDGGTLTIDISEKKQNIVISIQDTGIGMTKEEISRLGKPYYSTK 372 QCLINL KNGIE+M + GGTL + I++ +N ++ I DTG GM +E+IS+LG YYSTK Sbjct: 322 QCLINLLKNGIESMSQ--GGTLEVTINKSGENALVIISDTGEGMDEEQISKLGTLYYSTK 379 Query: 373 EEGTGLGMLMAYSAINKVKGIIEVESEKGKGTTFLITIP 411 +GTGLG ++AYS I +G I V+SE GKGT F I P Sbjct: 380 SKGTGLGTMVAYSIIKSFRGKIGVQSEVGKGTQFTIQFP 418 >C2XWL3.1 C2XWL3_BACCE Putative uncharacterized protein Length = 418 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 150/395 (37%), Positives = 231/395 (58%), Gaps = 25/395 (6%) Query: 31 NNRLLVFMSAVTMILCIAKPIKLEMGFIYDLRYIPFILVALFGGYRSVFPLYLIMNIYRF 90 NN L+ +S++ +I C+ P L GFIYDLR+IP ILV L+G +S+ + ++ YRF Sbjct: 34 NNILISVLSSIAIIFCMTFPFHLHAGFIYDLRFIPIILVFLYGNTKSIICIGVLYLSYRF 93 Query: 91 YLGGAGTFPSFLFST---AVLLLVPYLSKRFIKLSSKRRILWAVVIAALTMGLYL----- 142 YLGG+G FPSF+ T + ++ YLS + K K+ +L ++I T L + Sbjct: 94 YLGGSGVFPSFIIFTIISVITIMFRYLSPTYFK--EKKILLSILLILICTTSLSICGIVT 151 Query: 143 -INLGLITDKLDQQFW----ILTVYALLTHGAVMSXXXXXXXXXXXXXKNRDRILQSERL 197 IN G+ D +F I+ ++ +L ++ K ++R+ ++E+ Sbjct: 152 QINTGVKIDSTLIEFLFNYIIINIFTVLLSVYLIEGMIEKY-------KIKERMQRAEKF 204 Query: 198 NVVSELAASVSHEIRNPLTVTSGFLQLLNKSNTITPEEKGYVELSLLELNRAEKIVSDYL 257 + SELAAS++HEI NPLT GF QLLN+ + + Y+E+ LLE+ + + +++YL Sbjct: 205 YIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLEMQQIQSTINNYL 264 Query: 258 SFAKPQSDNMVCSNMKAEAEYTKNIIMPYATIHKVDV-QFNFNNTLNKCYDKNQIQQCLI 316 S KPQ+ ++ K+ I P A + V++ Q ++L + +++ CL Sbjct: 265 SLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYINANTEKLKICLT 324 Query: 317 NLYKNGIEAMREKDGGTLTIDISEKKQNIVISIQDTGIGMTKEEISRLGKPYYSTKEEGT 376 N+ +NGIEAM K+GG L I+I + K NIVI I DTGIGM+ ++I R+ P+YST E+GT Sbjct: 325 NIIQNGIEAM--KNGGVLQINIQKIKDNIVIDIIDTGIGMSSQQIKRIALPFYSTTEKGT 382 Query: 377 GLGMLMAYSAINKVKGIIEVESEKGKGTTFLITIP 411 GLG ++AYS I ++ G IE+ESE GKGT F ITIP Sbjct: 383 GLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417 >C2SU58.1 C2SU58_BACCE Putative uncharacterized protein Length = 418 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 151/400 (37%), Positives = 234/400 (58%), Gaps = 33/400 (8%) Query: 31 NNRLLVFMSAVTMILCIAKPIKLEMGFIYDLRYIPFILVALFGGYRSVFPLYLIMNIYRF 90 NN L+ +S++ +I C+ P L GFIYDLR+IP ILV L+G +S+ + ++ YRF Sbjct: 34 NNILISVLSSIAIIFCMTFPFHLHAGFIYDLRFIPIILVFLYGNTKSIICIGVLYLSYRF 93 Query: 91 YLGGAGTFPSFLFST---AVLLLVPYLSKRFIKLSSKRRILWAVVIAALTMGLYLINLGL 147 YLGG+G FPSF+ T + ++ YLS + K K+ +L ++I T L + G+ Sbjct: 94 YLGGSGVFPSFIIFTIISVITIMFRYLSPTYFK--EKKILLSILLILICTTSLSI--CGI 149 Query: 148 ITD-----KLDQ-------QFWILTVYALLTHGAVMSXXXXXXXXXXXXXKNRDRILQSE 195 +T K+D + I+ ++ +L ++ K ++R+ ++E Sbjct: 150 VTQINTGGKIDSTLIEFLFNYIIINIFTVLLSVYLIEGMIEKY-------KIKERMQRAE 202 Query: 196 RLNVVSELAASVSHEIRNPLTVTSGFLQLLNKSNTITPEEKGYVELSLLELNRAEKIVSD 255 + + SELAAS++HEI NPLT GF QLLN+ + + Y+E+ LLE+ + + +++ Sbjct: 203 KFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLEMQQIQSTINN 262 Query: 256 YLSFAKPQSDNMVCSNMKAE--AEYTKNIIMPYATIHKVDV-QFNFNNTLNKCYDKNQIQ 312 YLS KPQ N++ + K+ I P A + V++ Q ++L + +++ Sbjct: 263 YLSLTKPQ--NIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYINANTEKLK 320 Query: 313 QCLINLYKNGIEAMREKDGGTLTIDISEKKQNIVISIQDTGIGMTKEEISRLGKPYYSTK 372 CL N+ +NGIEAM K+GG L I+I + K NIVI I DTGIGM+ ++I R+ P+YST Sbjct: 321 ICLTNIIQNGIEAM--KNGGVLQINIQKIKDNIVIDIIDTGIGMSSQQIKRIALPFYSTT 378 Query: 373 EEGTGLGMLMAYSAINKVKGIIEVESEKGKGTTFLITIPT 412 E+GTGLG ++AYS I ++ G IEVESE GKGT F ITIP+ Sbjct: 379 EKGTGLGTMIAYSIIKELNGDIEVESELGKGTHFSITIPS 418 >C3A8I1.1 C3A8I1_BACMY Putative uncharacterized protein Length = 418 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 150/395 (37%), Positives = 230/395 (58%), Gaps = 25/395 (6%) Query: 31 NNRLLVFMSAVTMILCIAKPIKLEMGFIYDLRYIPFILVALFGGYRSVFPLYLIMNIYRF 90 NN L+ +S++ +I C+ P L GFIYDLR+IP ILV L+G +S+ + ++ YRF Sbjct: 34 NNILISVLSSIAIIFCMTFPFHLHAGFIYDLRFIPIILVFLYGNTKSIICIGVLYLSYRF 93 Query: 91 YLGGAGTFPSFLFST---AVLLLVPYLSKRFIKLSSKRRILWAVVIAALTMGLYL----- 142 YLGG+G FPSF+ T + ++ YLS + K K+ +L ++I T L + Sbjct: 94 YLGGSGVFPSFIIFTIISVITIMFRYLSPTYFK--EKKILLSILLILICTTSLSICGIVT 151 Query: 143 -INLGLITDKLDQQFW----ILTVYALLTHGAVMSXXXXXXXXXXXXXKNRDRILQSERL 197 IN G+ D +F I+ ++ +L ++ K ++R+ ++E+ Sbjct: 152 QINTGVKIDSTLIEFLFNYIIINIFTVLLSVYLIEGMIEKY-------KIKERMQRAEKF 204 Query: 198 NVVSELAASVSHEIRNPLTVTSGFLQLLNKSNTITPEEKGYVELSLLELNRAEKIVSDYL 257 + SELAAS++HEI NPLT GF QLLN+ + + Y+E+ LLE+ + + +++YL Sbjct: 205 YIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLEMQQIQSTINNYL 264 Query: 258 SFAKPQSDNMVCSNMKAEAEYTKNIIMPYATIHKVDV-QFNFNNTLNKCYDKNQIQQCLI 316 S KPQ+ ++ K+ I P A + V++ Q ++L + + + CL Sbjct: 265 SLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYINANTEKFKICLT 324 Query: 317 NLYKNGIEAMREKDGGTLTIDISEKKQNIVISIQDTGIGMTKEEISRLGKPYYSTKEEGT 376 N+ +NGIEAM K+GG L I+I + K NIVI I DTGIGM+ ++I R+ P+YST E+GT Sbjct: 325 NIIQNGIEAM--KNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIKRIALPFYSTTEKGT 382 Query: 377 GLGMLMAYSAINKVKGIIEVESEKGKGTTFLITIP 411 GLG ++AYS I ++ G IE+ESE GKGT F ITIP Sbjct: 383 GLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417 >A9VMN3.1 A9VMN3_BACWK Sensor protein EC=2.7.13.3 Length = 418 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 149/397 (37%), Positives = 232/397 (58%), Gaps = 29/397 (7%) Query: 31 NNRLLVFMSAVTMILCIAKPIKLEMGFIYDLRYIPFILVALFGGYRSVFPLYLIMNIYRF 90 NN L+ +S++ +I C+ P L GFIYDLR+IP ILV L+G +S+ + ++ YRF Sbjct: 34 NNILISVLSSIAIIFCMTFPFHLHAGFIYDLRFIPLILVFLYGNTKSIICIGVLYLSYRF 93 Query: 91 YLGGAGTFPSFLFST---AVLLLVPYLSKRFIKLSSKRRILWAVVIAALTMGLYLINLGL 147 YLGG+G FPSF+ T + ++ YLS + K K+ +L ++I T L + G+ Sbjct: 94 YLGGSGVFPSFIIFTIISVITIMFRYLSPTYFK--EKKILLSILLILICTTSLSI--CGI 149 Query: 148 ITD-----KLDQ-------QFWILTVYALLTHGAVMSXXXXXXXXXXXXXKNRDRILQSE 195 +T K+D + I+ ++ +L ++ K ++R+ ++E Sbjct: 150 VTQINTGGKIDSTLIEFLFNYIIINIFTVLLSVYLIEGMIEKY-------KIKERMQRAE 202 Query: 196 RLNVVSELAASVSHEIRNPLTVTSGFLQLLNKSNTITPEEKGYVELSLLELNRAEKIVSD 255 + + SELAAS++HEI NPLT GF QLLN+ + + Y+E+ LLE+ + + +++ Sbjct: 203 KFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLEMQQIQSTINN 262 Query: 256 YLSFAKPQSDNMVCSNMKAEAEYTKNIIMPYATIHKVDV-QFNFNNTLNKCYDKNQIQQC 314 YLS KPQ+ ++ K+ I P A + V++ Q ++L + +++ C Sbjct: 263 YLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYINANTEKLKIC 322 Query: 315 LINLYKNGIEAMREKDGGTLTIDISEKKQNIVISIQDTGIGMTKEEISRLGKPYYSTKEE 374 L N+ +NGIEAM K+GG L I+I + K NIVI I DTGIGM+ ++I R+ P+YST E+ Sbjct: 323 LTNIIQNGIEAM--KNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIKRIALPFYSTTEK 380 Query: 375 GTGLGMLMAYSAINKVKGIIEVESEKGKGTTFLITIP 411 GTGLG ++AYS I ++ G IE+ESE GKGT F ITIP Sbjct: 381 GTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,073,938,532 Number of extensions: 81958395 Number of successful extensions: 319544 Number of sequences better than 1.0e-05: 20283 Number of HSP's gapped: 298323 Number of HSP's successfully gapped: 20321 Length of query: 412 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 274 Effective length of database: 1,760,596,133 Effective search space: 482403340442 Effective search space used: 482403340442 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)