BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0107.p (845 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6CPJ0.1 A6CPJ0_9BACI Sensory box/GGDEF family protein 447 e-123 C2P1M5.1 C2P1M5_BACCE Sensory box/GGDEF 443 e-122 C3H4C0.1 C3H4C0_BACTU Sensory box/GGDEF 443 e-122 C2V3W9.1 C2V3W9_BACCE Sensory box/GGDEF 442 e-122 B5UL38.1 B5UL38_BACCE Sensory box/GGDEF family protein 442 e-122 >A6CPJ0.1 A6CPJ0_9BACI Sensory box/GGDEF family protein Length = 793 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 262/746 (35%), Positives = 397/746 (53%), Gaps = 9/746 (1%) Query: 97 KMILLGTATFSASHILIPLSINLPLAPEYYIL-HLLFTMAGCWAATYFGIWYSSMPRSYA 155 K IL+G ATF +++ + L+++ P ++ +++ + C A +YF + + Sbjct: 46 KAILIG-ATFFLTNLFVVLALDQPFRSTNHLFSYIVIYLLCCIAGSYFALRLTDNRSLNM 104 Query: 156 GRHFSISLAIAGIILVFDYLNIIFLFRDYVVWKPVLVLMTXXXXXXXXXXXXRVLVISNR 215 G +AI IIL+ +Y I+ LF + KPV+V+MT R L+ +R Sbjct: 105 GMFVLGGIAITLIILMANYTAILILFFHLLDVKPVMVIMTFLLAMAISFYSLRFLLQISR 164 Query: 216 NREYQLHSKATVPGIVXXXXXXXXXXXXXXFSVLPVGNPAPGSY-LQLTPYILTLFICSG 274 E S G + SVLP+ + L + PY + L + Sbjct: 165 EAENGDTSIWVSIGSIATGVALAGLPYLVAISVLPMIDAELSQLNLYMLPYAVELLLVWV 224 Query: 275 LYIIPDAYRDTRQERQNRRIIETEQHYMSLFEYNPDSVLAFDAQGIVTGLNRKAELLARQ 334 L +IPD + + RQ ++ +EQH+ SLF +NPD+V++FD QG N AE L Sbjct: 225 LSVIPDMFGEQRQLENLSKVEVSEQHFQSLFNHNPDAVISFDLQGNFLSANDGAEHLTGY 284 Query: 335 LGLELVGRHFSDLFEGEYHALAQHHYRHVLRGQSSTIELELRNPAGGMLTFWLTSLPIVV 394 EL+ D+ + + G S EL + + +T +PI Sbjct: 285 KREELLAMSLRDIVASRQLQKTLNQFELTKTGISQQSELSIIKKDQSVCYVSVTGVPIQT 344 Query: 395 EAVPVGIYSIIKDITKNKKDQETIRHLAYSDELTGLANRRSFHNLLLEHTEHTGVPAYPF 454 E G+Y+I KDIT++KK TI +L + D+LTGL NRR F + E PF Sbjct: 345 ENGIEGVYAIAKDITESKKQSNTIDYLFHYDDLTGLPNRRMF----IFEVEKAVREKTPF 400 Query: 455 TLFFIDLDRFKRINDLFGHSFGDKVIQQAAGKLKRCLPSSCSIARMGGDEFTVLVPHLRS 514 ++ +D R + I DLFG GD+V+++ + +L LP ++R GGDE LVP + Sbjct: 401 AIYSLDYGRLRTIRDLFGFKVGDRVLKELSLRLLSVLPDGSVVSRFGGDEIYCLVPRVDG 460 Query: 515 RAEMESLAASIVEEFAHPFEVGNHSVKLSASVGIARFPEDGLDADSLVKHADTAMYSAKE 574 E E + + F V H + + GI+ FPE+G + D L+K ADTA S + Sbjct: 461 NNEFEPALEQLYKILDTSFFVEGHEIFMEMKAGISMFPENGEEPDLLIKCADTARASIPD 520 Query: 575 NGSFQYQFYDAERDQTSLERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRW 634 N Y+ Y + D++++E+II+EN+L++++ D++ L+YQPK + +VG EALVRW Sbjct: 521 NSFHNYEVYQNKLDRSTMEKIIIENELKRAIGQDELVLYYQPKFNSTLKRLVGFEALVRW 580 Query: 635 QHPLLGMIPPLEFIPLAEKSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHL 694 HP G+IPP FIP AE++ I+ LE WVLR AC Q+ W+ + +PV+VN+SQ Sbjct: 581 NHPEKGLIPPGLFIPAAEQTNLIVDLEGWVLREACRQLYVWQSTELKGLPVSVNISQRSF 640 Query: 695 MKPDIFQSIMSTIHELDFDTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGT 754 P +++ ++E LLE EITES M NE+ I L L+ GI +S+DDFGT Sbjct: 641 ANPAFLENVQDILNEQKISASLLEFEITESMTMFNEKVTIEKLRQLKNLGIRISLDDFGT 700 Query: 755 GYSSLSYLQSLPIGCLKIDRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQ 814 GYSSLSYL LPI +KID+SF+ +T TD A+ I+S+A GL ++AEGVE +EQ Sbjct: 701 GYSSLSYLDKLPIDTIKIDKSFIDDMT--TDQSAMVSTILSIALHNGLGVIAEGVELKEQ 758 Query: 815 VALLKEIQCYNAQGFYYSKPVSADEI 840 V LL+ + C N QG+Y+S+P+ +EI Sbjct: 759 VTLLQSLGCVNIQGYYFSRPLPPEEI 784 >C2P1M5.1 C2P1M5_BACCE Sensory box/GGDEF Length = 828 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/552 (39%), Positives = 339/552 (61%), Gaps = 2/552 (0%) Query: 289 RQNRRIIETEQHYMSLFEYNPDSVLAFDAQGIVTGLNRKAELLARQLGLELVGRHFSDLF 348 ++ +++ ++ + SL+EY+PD +L D+ GIV +N+ +L + L+G+ +F Sbjct: 267 NKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESAALIGKECFSIF 326 Query: 349 EGEYHALAQHHYRHVLRGQSSTIELELRNPAGGMLTFW-LTSLPIVVEAVPVGIYSIIKD 407 E + + + R SS+++L ++N + FW +T +PI++E G Y ++KD Sbjct: 327 LDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWYVTIVPIMIEGQTFGSYVMVKD 386 Query: 408 ITKNKKDQETIRHLAYSDELTGLANRRSFHNLLLEHTEHTGVPAYPFTLFFIDLDRFKRI 467 IT+ K+ QE I +LA+ D +T + NR F L + F L +IDL+RFK I Sbjct: 387 ITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQDKFGLLYIDLNRFKTI 446 Query: 468 NDLFGHSFGDKVIQQAAGKLKRCLPSSCSIARMGGDEFTVLVPHLRSRAEMESLAASIVE 527 ND GHS GDKV+++ A + + CL + +AR+GGDEF ++V H ++ ++ L ++ Sbjct: 447 NDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFAIIV-HNQTEQQLLDLCKTLFR 505 Query: 528 EFAHPFEVGNHSVKLSASVGIARFPEDGLDADSLVKHADTAMYSAKENGSFQYQFYDAER 587 PF V HS LS S+GIA +P G++ +L++HAD AMYSAKE G+ YD Sbjct: 506 ITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETL 565 Query: 588 DQTSLERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEF 647 Q R+ LE DL +++N+++ L YQP+ID ++G+++G EAL+RWQHP LG+I P EF Sbjct: 566 SQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEF 625 Query: 648 IPLAEKSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTI 707 IP+AE++ II + +W L+ AC Q+K W G + + +N+S I + D Q+I+STI Sbjct: 626 IPIAEETAQIISIGKWTLQKACQQLKEWHSAGFSNLKMGINLSAIEFEQKDFVQTIISTI 685 Query: 708 HELDFDTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPI 767 E+ ++LE+TE M +E+ +S L L+ GI +S+DDFGTGYSSL+YL PI Sbjct: 686 EEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGIHLSIDDFGTGYSSLAYLPLYPI 745 Query: 768 GCLKIDRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQ 827 LKI R FV +I T TD I + IIS+A L + ++AEGVET+EQ+ +L+ CY Q Sbjct: 746 DTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVIAEGVETKEQLTVLQRNACYLIQ 805 Query: 828 GFYYSKPVSADE 839 G+YYSKPV+ DE Sbjct: 806 GYYYSKPVNEDE 817 >C3H4C0.1 C3H4C0_BACTU Sensory box/GGDEF Length = 785 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/552 (39%), Positives = 339/552 (61%), Gaps = 2/552 (0%) Query: 289 RQNRRIIETEQHYMSLFEYNPDSVLAFDAQGIVTGLNRKAELLARQLGLELVGRHFSDLF 348 ++ +++ ++ + SL+EY+PD +L D+ GIV +N+ +L + L+G+ +F Sbjct: 224 NKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESAALIGKECFSIF 283 Query: 349 EGEYHALAQHHYRHVLRGQSSTIELELRNPAGGMLTFW-LTSLPIVVEAVPVGIYSIIKD 407 E + + + R SS+++L ++N + FW +T +PI++E G Y ++KD Sbjct: 284 LDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWYVTIVPIMIEGQTFGSYVMVKD 343 Query: 408 ITKNKKDQETIRHLAYSDELTGLANRRSFHNLLLEHTEHTGVPAYPFTLFFIDLDRFKRI 467 IT+ K+ QE I +LA+ D +T + NR F L + F L +IDL+RFK I Sbjct: 344 ITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQDKFGLLYIDLNRFKTI 403 Query: 468 NDLFGHSFGDKVIQQAAGKLKRCLPSSCSIARMGGDEFTVLVPHLRSRAEMESLAASIVE 527 ND GHS GDKV+++ A + + CL + +AR+GGDEF ++V H ++ ++ L ++ Sbjct: 404 NDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFAIIV-HNQTEQQLLDLCTTLFR 462 Query: 528 EFAHPFEVGNHSVKLSASVGIARFPEDGLDADSLVKHADTAMYSAKENGSFQYQFYDAER 587 PF V HS LS S+GIA +P G++ +L++HAD AMYSAKE G+ YD Sbjct: 463 ITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETL 522 Query: 588 DQTSLERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEF 647 Q R+ LE DL +++N+++ L YQP+ID ++G+++G EAL+RWQHP LG+I P EF Sbjct: 523 SQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEF 582 Query: 648 IPLAEKSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTI 707 IP+AE++ II + +W L+ AC Q+K W G + + +N+S I + D Q+I+STI Sbjct: 583 IPIAEETAQIISIGKWTLQKACQQLKEWHSAGFSNLKMGINLSAIEFEQKDFVQTIISTI 642 Query: 708 HELDFDTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPI 767 E+ ++LE+TE M +E+ +S L L+ G+ +S+DDFGTGYSSL+YL PI Sbjct: 643 EEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPI 702 Query: 768 GCLKIDRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQ 827 LKI R FV +I T TD I + IIS+A L + ++AEGVET+EQ+ +L+ CY Q Sbjct: 703 DTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVIAEGVETKEQLTVLQRTACYLIQ 762 Query: 828 GFYYSKPVSADE 839 G+YYSKPV+ DE Sbjct: 763 GYYYSKPVNEDE 774 >C2V3W9.1 C2V3W9_BACCE Sensory box/GGDEF Length = 827 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/552 (39%), Positives = 340/552 (61%), Gaps = 2/552 (0%) Query: 289 RQNRRIIETEQHYMSLFEYNPDSVLAFDAQGIVTGLNRKAELLARQLGLELVGRHFSDLF 348 +++ +++ ++ + SL+EY+PD +L D GIV +N+ +L + EL+G+ +F Sbjct: 267 KKSNDLVKNQERFKSLYEYHPDPILTIDPNGIVLNINQSGSVLLGKDNAELIGKECFSIF 326 Query: 349 EGEYHALAQHHYRHVLRGQSSTIELELRNPAGGMLTFW-LTSLPIVVEAVPVGIYSIIKD 407 E + + + SS+++L ++N + FW +T +PI++E G Y ++KD Sbjct: 327 LDEDKSELEVALKEGQLCSSSSLQLRVKNNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKD 386 Query: 408 ITKNKKDQETIRHLAYSDELTGLANRRSFHNLLLEHTEHTGVPAYPFTLFFIDLDRFKRI 467 IT+ K+ QE I +LA+ D +T + NR F L E F L +IDL+RFK I Sbjct: 387 ITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIERVQKTQDKFGLLYIDLNRFKTI 446 Query: 468 NDLFGHSFGDKVIQQAAGKLKRCLPSSCSIARMGGDEFTVLVPHLRSRAEMESLAASIVE 527 ND GH+ GDKV+++ A + + CL + +AR+GGDEF ++V H ++ ++ L ++ Sbjct: 447 NDTLGHAIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFAIIV-HNKTEQQLLDLCETLFR 505 Query: 528 EFAHPFEVGNHSVKLSASVGIARFPEDGLDADSLVKHADTAMYSAKENGSFQYQFYDAER 587 PF V HS LS S+GIA +P G +A +L++HAD AMYSAKE G+ YD Sbjct: 506 ITEKPFVVNQHSFYLSLSIGIALYPFGGTNAKTLLQHADIAMYSAKEKGNNTVCMYDETL 565 Query: 588 DQTSLERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEF 647 Q R+ LE DL +++N+++ L YQP+ID ++G+++G EAL+RWQHP LG+I P EF Sbjct: 566 SQKITRRLQLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEF 625 Query: 648 IPLAEKSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTI 707 IP+AE++ II + +W L+ AC Q+K W G + + +N+S I + D Q+I+STI Sbjct: 626 IPIAEETSQIISIGKWTLQQACRQLKEWHSAGCTNLKMGINLSAIEFEQKDFVQTIISTI 685 Query: 708 HELDFDTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPI 767 E+ L++LE+TE M +E+ +S L L+ G+ +S+DDFGTGYSSL+YL PI Sbjct: 686 EEIGVPANLIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPI 745 Query: 768 GCLKIDRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQ 827 LKI R FV +I T D I + IIS+A L + ++AEGVET+EQ+ +L++ CY Q Sbjct: 746 DTLKIPREFVNRIATSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLTVLQQNACYLIQ 805 Query: 828 GFYYSKPVSADE 839 G+YYSKP++ DE Sbjct: 806 GYYYSKPINEDE 817 >B5UL38.1 B5UL38_BACCE Sensory box/GGDEF family protein Length = 828 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/552 (39%), Positives = 339/552 (61%), Gaps = 2/552 (0%) Query: 289 RQNRRIIETEQHYMSLFEYNPDSVLAFDAQGIVTGLNRKAELLARQLGLELVGRHFSDLF 348 ++ +++ ++ + SL+EY+PD +L D+ GIV +N+ +L + L+G+ +F Sbjct: 267 NKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESAALIGKECFSIF 326 Query: 349 EGEYHALAQHHYRHVLRGQSSTIELELRNPAGGMLTFW-LTSLPIVVEAVPVGIYSIIKD 407 E + + + R SS+++L ++N + FW +T +PI++E G Y ++KD Sbjct: 327 LDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWYVTIVPIMIEGQTFGSYVMVKD 386 Query: 408 ITKNKKDQETIRHLAYSDELTGLANRRSFHNLLLEHTEHTGVPAYPFTLFFIDLDRFKRI 467 IT+ K+ QE I +LA+ D +T + NR F L + F L +IDL+RFK I Sbjct: 387 ITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQDKFGLLYIDLNRFKTI 446 Query: 468 NDLFGHSFGDKVIQQAAGKLKRCLPSSCSIARMGGDEFTVLVPHLRSRAEMESLAASIVE 527 ND GHS GDKV+++ A + + CL + +AR+GGDEF ++V H ++ ++ L ++ Sbjct: 447 NDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFAIIV-HNQTEQQLLDLCKTLFR 505 Query: 528 EFAHPFEVGNHSVKLSASVGIARFPEDGLDADSLVKHADTAMYSAKENGSFQYQFYDAER 587 PF V HS LS S+GIA +P G++ +L++HAD AMYSAKE G+ YD Sbjct: 506 ITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETL 565 Query: 588 DQTSLERIILENDLEQSLDNDQIRLFYQPKIDIRSGEIVGLEALVRWQHPLLGMIPPLEF 647 Q R+ LE DL +++N+++ L YQP+ID ++G+++G EAL+RWQHP LG+I P EF Sbjct: 566 SQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEF 625 Query: 648 IPLAEKSGFIIPLEQWVLRTACAQVKTWEQEGRQVVPVAVNVSQIHLMKPDIFQSIMSTI 707 IP+AE++ II + +W L+ AC Q+K W G + + +N+S I + D Q+I+STI Sbjct: 626 IPIAEETAQIISIGKWTLQKACQQLKEWHSAGFSNLKMGINLSAIEFEQKDFVQTIISTI 685 Query: 708 HELDFDTQLLELEITESAMMHNEEHVISILNDLRRAGISVSMDDFGTGYSSLSYLQSLPI 767 E+ ++LE+TE M +E+ +S L L+ G+ +S+DDFGTGYSSL+YL PI Sbjct: 686 EEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPI 745 Query: 768 GCLKIDRSFVRKITTDTDSRAIAEMIISMAKQLGLTIVAEGVETEEQVALLKEIQCYNAQ 827 LKI R FV +I T TD I + IIS+A L + ++AEGVET+EQ+ +L+ CY Q Sbjct: 746 DTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVIAEGVETKEQLTVLQRNACYLIQ 805 Query: 828 GFYYSKPVSADE 839 G+YYSKPV+ DE Sbjct: 806 GYYYSKPVNEDE 817 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,580,379,963 Number of extensions: 182460109 Number of successful extensions: 474049 Number of sequences better than 1.0e-05: 18040 Number of HSP's gapped: 446281 Number of HSP's successfully gapped: 18142 Length of query: 845 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 700 Effective length of database: 1,694,649,028 Effective search space: 1186254319600 Effective search space used: 1186254319600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 136 (57.0 bits)