BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0105.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O32157.1 O32157_BACSU Fructoselysine-6-P-deglycase EC=3.5.-.- 387 e-105 A7Z8H2.1 A7Z8H2_BACA2 YurP 385 e-105 A6UKP3.1 A6UKP3_SINMW Sugar isomerase (SIS) 279 3e-73 Q2B7W1.1 Q2B7W1_9BACI Putative uncharacterized protein 277 1e-72 Q8ZR50.1 Q8ZR50_SALTY Putative phosphosugar isomerases 275 5e-72 >O32157.1 O32157_BACSU Fructoselysine-6-P-deglycase EC=3.5.-.- Length = 328 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/326 (55%), Positives = 237/326 (72%), Gaps = 4/326 (1%) Query: 9 KAQFQVERILEAFKQKTINNVFYVACGGSSALMYPSKYFIDRESSNITAEIYSSNEFIYR 68 K +V+ L+ K KTI++VF+VACGGSSA+MYPSKY DRES +I +++YS+NEFI R Sbjct: 7 KVNREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQR 66 Query: 69 NPKSLGADSLVILCSHKGKTPETTDAAHFAKSKGALVVSLMYVDTAPLADESDFIVNYSW 128 NP LG SLVILCSH G TPET AA FA+ KGAL +++ + +PLA E+ ++ Y W Sbjct: 67 NPVQLGEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDW 126 Query: 129 APPGELDPLPEIMNYSILYRLTMGLLYVQEGNELYLKLLSSLENMDTVLEKAKVQYLAPA 188 + L NY +LY++ G L V E N + + + L+ + V EKA Q A Sbjct: 127 GD----EALAINTNYGVLYQIVFGTLQVLENNTKFEQAIEGLDQLQAVYEKALKQEADNA 182 Query: 189 KAFAAEYKDEKIMYTMASGSNYGIAYSFAICILMEMQWIHSHAIHAGEFFHGPFEILDKN 248 K FA ++ E I+YTMASG+NYG+AYS++ICILMEMQWIHSHAIHAGE+FHGPFEI+D++ Sbjct: 183 KQFAKAHEKESIIYTMASGANYGVAYSYSICILMEMQWIHSHAIHAGEYFHGPFEIIDES 242 Query: 249 VPFILLMGLDETRPMEERALKFLKEHGEKMLVIDAEQFDLTGIEEEVKGYIAPLVMNLVL 308 VPFI+L+GLDETRP+EERAL F K++G+K+ V+DA +D T I++ VKGY+APLV+N VL Sbjct: 243 VPFIILLGLDETRPLEERALTFSKKYGKKLTVLDAASYDFTAIDDSVKGYLAPLVLNRVL 302 Query: 309 RVYAVELAKATGHPLEERRYMFKVPY 334 R YA ELA+ HPL RRYM+KV Y Sbjct: 303 RSYADELAEERNHPLSHRRYMWKVEY 328 >A7Z8H2.1 A7Z8H2_BACA2 YurP Length = 328 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/329 (55%), Positives = 244/329 (74%), Gaps = 6/329 (1%) Query: 8 TKAQF--QVERILEAFKQKTINNVFYVACGGSSALMYPSKYFIDRESSNITAEIYSSNEF 65 T AQ +V+ L+ K KTI++VF+VACGGSSA+MYPSKY DRE+ I++++YSSNEF Sbjct: 4 TAAQVNHKVQAFLDDLKGKTIDHVFFVACGGSSAIMYPSKYVFDREAKAISSDLYSSNEF 63 Query: 66 IYRNPKSLGADSLVILCSHKGKTPETTDAAHFAKSKGALVVSLMYVDTAPLADESDFIVN 125 I RNP LG +SLVILCS G TPET AA FA+ KGAL +++ + +PLA E++++ Sbjct: 64 IQRNPVQLGENSLVILCSQSGNTPETVKAAGFARKKGALTIAMTFEPDSPLAKEAEYVAV 123 Query: 126 YSWAPPGELDPLPEIMNYSILYRLTMGLLYVQEGNELYLKLLSSLENMDTVLEKAKVQYL 185 Y W + MNY +LY++ G L+V E + ++ + + L + TV +KA Q Sbjct: 124 YDWGENAQAIN----MNYGVLYQIVFGALHVLENHPVFEQAIDGLNKLQTVYDKALKQEA 179 Query: 186 APAKAFAAEYKDEKIMYTMASGSNYGIAYSFAICILMEMQWIHSHAIHAGEFFHGPFEIL 245 AKAFA ++ E I+YTMASG+NYG+AYS++ICILMEMQWIHSHAIHAGE+FHGPFEI+ Sbjct: 180 DHAKAFAKAHEKEDIIYTMASGANYGVAYSYSICILMEMQWIHSHAIHAGEYFHGPFEII 239 Query: 246 DKNVPFILLMGLDETRPMEERALKFLKEHGEKMLVIDAEQFDLTGIEEEVKGYIAPLVMN 305 D++VPFI+L+GLDETRP+EERAL F K +G+K+ V+DA +D +GI++ VKGY+APLV+N Sbjct: 240 DESVPFIILLGLDETRPLEERALSFSKRYGKKLTVLDAAAYDFSGIDDSVKGYLAPLVLN 299 Query: 306 LVLRVYAVELAKATGHPLEERRYMFKVPY 334 VLR YA LA+A HPL +RRYM+KV Y Sbjct: 300 RVLRSYADALAEARNHPLSQRRYMWKVEY 328 >A6UKP3.1 A6UKP3_SINMW Sugar isomerase (SIS) Length = 333 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/321 (44%), Positives = 212/321 (66%), Gaps = 6/321 (1%) Query: 18 LEAFKQKTINNVFYVACGGSSALMYPSKYFIDRESSNITAEIYSSNEFIYRNPKSLGADS 77 L A K++ +VF++ACGGS ++M+P+K+ +D+ + + ++IY++ EF+ R P+SL ++ Sbjct: 15 LSALDAKSVKHVFFIACGGSLSIMHPAKFLLDQHAP-LPSDIYNAAEFVARAPRSLDRNA 73 Query: 78 LVILCSHKGKTPETTDAAHFAKSKGALVVSLMYVDTAPLADESDFIVNYSWAPPGELDPL 137 LVI CS G T ETT AA FA+SKGA + L +PLA+ D +V + AP P+ Sbjct: 74 LVIFCSMTGTTKETTAAAEFARSKGATAIGLTVEPASPLAEAVDHVVGFE-APYTTGVPI 132 Query: 138 -PEIMNYSILYRLTMGLLYVQEGNELYLKLLSSLENMDTVLEKAKVQYLAPAKAFAAEYK 196 + NYS +Y++ MGL+ + G +L L+ SL + +++A + + +A + Sbjct: 133 DAKNSNYSRIYQIVMGLVALTGGEDLTETLIDSLVALQPAIDRAHATFAPMFEDYAPRFA 192 Query: 197 DEKIMYTMASGSNYGIAYSFAICILMEMQWIHSHAIHAGEFFHGPFEILDKNVPFILLMG 256 E ++YT+ASG++YG AYSFAIC+LMEMQWI+S AIHA EFFHGPFE+LDKN FIL+ G Sbjct: 193 KEDVVYTVASGASYGAAYSFAICVLMEMQWINSQAIHANEFFHGPFEVLDKNRAFILMKG 252 Query: 257 LDETRPMEERALKFLKEHG--EKMLVIDAEQFDLTGIEEEVKGYIAPLVMNLVLRVYAVE 314 LD TRP+E+RA +FL G E +LV+DAE+ DL+GI+ + +G + PL+ L +A + Sbjct: 253 LDSTRPLEQRADEFLHRFGSAENILVLDAEKLDLSGIDPQFRGNVVPLIFFDTLWRFAYK 312 Query: 315 LAKATGHP-LEERRYMFKVPY 334 +A H LE RRYM K+ Y Sbjct: 313 IADLRKHEMLEARRYMKKISY 333 >Q2B7W1.1 Q2B7W1_9BACI Putative uncharacterized protein Length = 324 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 212/327 (64%), Gaps = 15/327 (4%) Query: 13 QVERILEAFKQKTINNVFYVACGGSSALMYPSKYFIDRESSNITAEIYSSNEFIYRNPKS 72 Q++ +EA + K + NVF+VACGGS A + YFI +++ + +Y+SNEF++ NPK+ Sbjct: 8 QIQMAIEAIENKNVQNVFFVACGGSMASLSFGDYFITKDTGKPSF-VYTSNEFVHLNPKA 66 Query: 73 LGADSLVILCSHKGKTPETTDAAHFAKSKGALVVSLMYVDTAPLADESDFIVNYSW---- 128 L +SLVIL SH G TPET AA +A+SKGAL V++ +PL E++++++Y++ Sbjct: 67 LNENSLVILRSHSGTTPETVKAATYARSKGALTVAISMDVESPLCKEAEYVLHYNYKDGS 126 Query: 129 -APPGELDPLPEIMNYSILYRLTMGLLYVQEGNELYLKLLSSLENMDTVLEKAKVQYLAP 187 A GE+ I Y LL + G+E Y + + L N+ ++EK + + Sbjct: 127 DAIDGEI---------GIYYTFIFKLLKIFTGDEKYERGIEQLSNLGDLIEKNQQLFREA 177 Query: 188 AKAFAAEYKDEKIMYTMASGSNYGIAYSFAICILMEMQWIHSHAIHAGEFFHGPFEILDK 247 A F K EK +YTMASG+ AYSF C+LMEM WIHS+AIH+GE+FHGPFEI D Sbjct: 178 AFEFGKRNKREKTIYTMASGAYIHHAYSFTSCLLMEMLWIHSNAIHSGEYFHGPFEITDF 237 Query: 248 NVPFILLMGLDETRPMEERALKFLKEHGEKMLVIDAEQFDLTGIEEEVKGYIAPLVMNLV 307 +VPF+L+ G +RP++ERAL F+ ++ EK+ V+DA +F+ +G++E++K Y P + V Sbjct: 238 DVPFLLIAGEGPSRPLDERALDFVAKYSEKVEVVDASKFNYSGVDEDLKEYFGPALTGPV 297 Query: 308 LRVYAVELAKATGHPLEERRYMFKVPY 334 +R+YA LA+ TGHPL RRYM+K+ Y Sbjct: 298 MRLYADGLAEHTGHPLSVRRYMWKMEY 324 >Q8ZR50.1 Q8ZR50_SALTY Putative phosphosugar isomerases Length = 328 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 135/319 (42%), Positives = 199/319 (62%), Gaps = 3/319 (0%) Query: 17 ILEAFKQKTINNVFYVACGGSSALMYPSKYFIDRESSNITAEIYSSNEFIYRNPKSLGAD 76 I + ++ I V++V CGGS +P KYF+D E+S + +SNEF++ PK+LG + Sbjct: 12 ISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKN 71 Query: 77 SLVILCSHKGKTPETTDAAHFAKSKGALVVSLMYVDTAPLADESDFIVNYSWAP-PGELD 135 S+VIL S +G T ET AA A+ KGA + L+Y PL + SD+I+ Y WA P +D Sbjct: 72 SVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVD 131 Query: 136 PLPEIMNYSILYRLTMGLLYVQEGNELYLKLLSSLENMDTVLEKAKVQYLAPAKAFAAEY 195 P + YS+ L + +L EG Y +L+S+ V+ A+ Q A+ FAAE+ Sbjct: 132 PAQQKAAYSLW--LALEILAQTEGYAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEW 189 Query: 196 KDEKIMYTMASGSNYGIAYSFAICILMEMQWIHSHAIHAGEFFHGPFEILDKNVPFILLM 255 KDEK++Y M SG ++G A+ +ICIL+EMQWI+S +IH+GE+FHGPFEI + PFILL Sbjct: 190 KDEKVVYMMGSGPSFGAAHQESICILLEMQWINSASIHSGEYFHGPFEITEPGTPFILLQ 249 Query: 256 GLDETRPMEERALKFLKEHGEKMLVIDAEQFDLTGIEEEVKGYIAPLVMNLVLRVYAVEL 315 TRP+++RA++F++ + K+ +IDA++ + + +V Y L+ N VL VY + L Sbjct: 250 SSGRTRPLDDRAIRFIERYQGKLQLIDADKLGIQDLSTDVGEYFCGLLHNCVLDVYNLAL 309 Query: 316 AKATGHPLEERRYMFKVPY 334 A A HPL RRYM+KV Y Sbjct: 310 ATARNHPLTTRRYMWKVEY 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,913,515,955 Number of extensions: 78605981 Number of successful extensions: 193191 Number of sequences better than 1.0e-05: 1272 Number of HSP's gapped: 192699 Number of HSP's successfully gapped: 1272 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)