BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0101.p (182 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q63G92.1 Q63G92_BACCZ Amino acid ABC transporter, permease 151 3e-35 Q73DU9.1 Q73DU9_BACC1 Amino acid ABC transporter, permease protein 150 6e-35 Q89TU5.1 Q89TU5_BRAJA Blr1680 protein 140 6e-32 C3KDA0.1 C3KDA0_PSEFS Putative amino acid ABC transport-system, ... 135 1e-30 B9KWN3.1 B9KWN3_RHOSK ABC amino acid transporter, inner membrane... 134 3e-30 >Q63G92.1 Q63G92_BACCZ Amino acid ABC transporter, permease Length = 217 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 121/181 (66%), Gaps = 7/181 (3%) Query: 2 GVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLPEA-GIYVNSYISAMIALSVWS 60 G+++ +K ++ I+R Y ELFR +PI++ LF+ FF LP A GI V+S ++A+ ALS+W Sbjct: 42 GIVRTSKITILRFISRTYIELFRSIPILVWLFLFFFGLPIALGIDVSSTVAAITALSLWG 101 Query: 61 SSNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQS 120 + I VRGA+QS+P Q EA S+GL+ Q +YV++PQA RRM+P+ I + ++Q+ Sbjct: 102 ITEIGEIVRGALQSLPKGQVEAGKSIGLNKNQLYQYVLIPQAIRRMIPATINIFIRIIQT 161 Query: 121 TTLSVLIGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLERS 180 T+L+VLIG + +K+ Q ++ER AF IY YF++CYPLS+W+++LE Sbjct: 162 TSLTVLIGVTEVIKAGQQIVERT------GEAFLIYGCLFIFYFLLCYPLSIWSRKLETR 215 Query: 181 Y 181 + Sbjct: 216 W 216 >Q73DU9.1 Q73DU9_BACC1 Amino acid ABC transporter, permease protein Length = 217 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 120/181 (66%), Gaps = 7/181 (3%) Query: 2 GVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLP-EAGIYVNSYISAMIALSVWS 60 G+++ +K ++ I+R Y ELFR +PI++ LF+ FF LP GI V+S ++A+ ALS+W Sbjct: 42 GIIRTSKITILRFISRTYIELFRSIPILVWLFLFFFGLPITLGIDVSSTVAAITALSLWG 101 Query: 61 SSNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQS 120 + I VRGA+QS+P Q EA S+G++ Q +YV++PQA RRM+P+ I + ++Q+ Sbjct: 102 ITEIGEIVRGALQSLPKGQVEAGKSIGMNKKQLYQYVLIPQAIRRMIPATINIFIRIIQT 161 Query: 121 TTLSVLIGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLERS 180 T+L+VLIG + +K+ Q ++ER AF IY YF++CYPLS+W+++LE Sbjct: 162 TSLTVLIGVTEVIKAGQQIVERT------GEAFLIYGCLFIFYFLLCYPLSIWSRKLETR 215 Query: 181 Y 181 + Sbjct: 216 W 216 >Q89TU5.1 Q89TU5_BRAJA Blr1680 protein Length = 220 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 74/169 (43%), Positives = 105/169 (62%), Gaps = 1/169 (0%) Query: 15 IARGYAELFRGLPIVITLFIVFFMLPEAGIYVNSYISAMIALSVWSSSNISVAVRGAIQS 74 + R Y ELFRG+P ++ L VFF LP+ G+ +A+I L +W +NI RGA+ S Sbjct: 51 VGRLYVELFRGVPSLMILLFVFFALPQIGLRTGPLTAAIIGLGLWGGANIGEVFRGALDS 110 Query: 75 IPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQSTTLSVLIGNLDFLK 134 IP Q + A +LGLS+ + + +VILPQAFRR LP +G L+ LVQ++ L+ ++G D L Sbjct: 111 IPHRQEQGARALGLSATEALVFVILPQAFRRALPPYVGQLTVLVQASALTSVVGVSDLLG 170 Query: 135 SAQLVIERVE-IMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLERSYR 182 SA+ +IER+ + G S A +IY +FVICY LS A +ER R Sbjct: 171 SARQMIERLAYVGTGDSHAIEIYLGVLSIFFVICYALSGLASMIERCLR 219 >C3KDA0.1 C3KDA0_PSEFS Putative amino acid ABC transport-system, membrane protein Length = 219 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 114/181 (62%), Gaps = 7/181 (3%) Query: 2 GVLQMAKNRLVSSIARGYAELFRGLPIVITLFIVFFMLP-EAGIYVNSYISAMIALSVWS 60 GVL+ NRL++++ R Y ELFR +P+++ L+++FF LP G+ + S+ A++ LS+W Sbjct: 42 GVLRTLNNRLINAVLRVYLELFRAIPVLVWLYLLFFGLPIFFGLSIPSFWCAVLVLSLWG 101 Query: 61 SSNISVAVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQS 120 +S + VRGA+ S+P Q EA S+GLS Q YV+LPQA +RM P I + + ++++ Sbjct: 102 ASEVGEVVRGALHSLPRGQREAGLSIGLSDPQLYGYVLLPQALKRMTPPTINVYTRIIKT 161 Query: 121 TTLSVLIGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLERS 180 ++L+VLIG +D +K Q +IER + IY +F ICYPLS +K LER Sbjct: 162 SSLAVLIGVVDVIKVGQQIIERTY------ESVLIYGVLFLFFFFICYPLSAASKVLERR 215 Query: 181 Y 181 + Sbjct: 216 W 216 >B9KWN3.1 B9KWN3_RHOSK ABC amino acid transporter, inner membrane subunit Length = 243 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 108/175 (61%) Query: 7 AKNRLVSSIARGYAELFRGLPIVITLFIVFFMLPEAGIYVNSYISAMIALSVWSSSNISV 66 AK RLV+ + EL R LP+++T+ +V+FMLP G+ +N + S +A+SVW +N + Sbjct: 42 AKPRLVNRASYALVELLRDLPLMVTVLLVYFMLPMTGLGLNPFWSCCLAISVWGGANGAQ 101 Query: 67 AVRGAIQSIPPTQFEAAHSLGLSSVQTMRYVILPQAFRRMLPSIIGLLSNLVQSTTLSVL 126 +R + S+ Q E A + G V+T+ V LPQA ++P +GLL+ LVQ+T+L + Sbjct: 102 ILRAGLASVGRGQRETAAAFGFGPVKTLLLVTLPQAMPVIVPPYVGLLTALVQATSLGAV 161 Query: 127 IGNLDFLKSAQLVIERVEIMQGGSIAFQIYXXXXXXYFVICYPLSMWAKRLERSY 181 +G + L++ Q++IE+ IMQGGS A+ +Y YF +C +S+ R+ER + Sbjct: 162 VGAQELLRTGQVLIEQTTIMQGGSPAYLVYGSILVVYFTLCTLISLVGGRIERHF 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 888,672,053 Number of extensions: 29371617 Number of successful extensions: 131947 Number of sequences better than 1.0e-05: 7107 Number of HSP's gapped: 126745 Number of HSP's successfully gapped: 7117 Length of query: 182 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 55 Effective length of database: 1,864,227,298 Effective search space: 102532501390 Effective search space used: 102532501390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)