BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0100.p (242 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9ADY7.1 Q9ADY7_9RHIZ GtpC 178 3e-43 A0NZ88.1 A0NZ88_9RHOB ABC amino acid transporter, inner membrane... 178 4e-43 Q0FNT5.1 Q0FNT5_9RHOB ABC amino acid transporter, inner membrane... 168 3e-40 A8IK78.1 A8IK78_AZOC5 Putative ABC amino acid transporter permea... 155 2e-36 Q3IVC2.1 Q3IVC2_RHOS4 ABC amino acid transporter, inner membrane... 140 1e-31 >Q9ADY7.1 Q9ADY7_9RHIZ GtpC Length = 222 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/215 (43%), Positives = 128/215 (59%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 ++ DF YI++ LP LM GL+MT+ +S +AIL S +IG+ G+ RT V + V YV+ Sbjct: 2 VAMDFAYILEALPDLMSGLRMTLLVSFIAILLSCIIGVIGSIMRTSGVKALEYTVTAYVE 61 Query: 61 IIRNTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXX 120 IR TP LV IFFV++GLP +G++ G++ L+ W AF +ENFR G AV Sbjct: 62 FIRGTPFLVQIFFVFYGLPSLGLRFSIFWSGVIALTAWASAFQIENFRAGLAAVDRGMQD 121 Query: 121 XXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMA 180 RW I++PL R + P+ NT V+ IKNSAY+ IG+VELTFVAVDR+A Sbjct: 122 ASASLGLKRWHYGVFIVLPLAARAALPSSMNTIVATIKNSAYLQAIGLVELTFVAVDRIA 181 Query: 181 YDFKTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 YDF+ EM + AS + S +ERRL+ Sbjct: 182 YDFRAIEMFASICVIYLLCVFTASGVGSMVERRLN 216 >A0NZ88.1 A0NZ88_9RHOB ABC amino acid transporter, inner membrane subunit Length = 222 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/212 (44%), Positives = 127/212 (59%) Query: 4 DFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVDIIR 63 D+GYI +P L+ GLKMT+ +SVLAIL SLL+GL G A R + +V VA YV+ IR Sbjct: 5 DWGYIWDAVPDLLQGLKMTLLVSVLAILLSLLMGLIGCALRMSPLKIVGYAVAAYVEFIR 64 Query: 64 NTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXXXXX 123 TP LV +FFV++GLP +G+ L G+V LS+W F +E+FR G +V Sbjct: 65 GTPYLVQVFFVFYGLPNLGLTLSVFWSGVVALSIWASVFHIESFRAGLSSVSKDIHNTSA 124 Query: 124 XXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMAYDF 183 RWQ +++P+ R + P+ NT VS IKNSAY+ IG+VELTFVAVDR+AY+F Sbjct: 125 SLGLRRWQHALLVVLPIAARSALPSTLNTVVSTIKNSAYLQAIGLVELTFVAVDRIAYEF 184 Query: 184 KTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 + EM S L ++ERRL+ Sbjct: 185 RATEMFLSICVIYLVIVLAVSGLGHRLERRLN 216 >Q0FNT5.1 Q0FNT5_9RHOB ABC amino acid transporter, inner membrane subunit Length = 220 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 126/212 (59%) Query: 4 DFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVDIIR 63 D+ YI +P LM GL MT+ +S LAILFSL+ G+ G A R + +S +VA YV+ IR Sbjct: 3 DWAYIWAAVPDLMRGLGMTLIVSFLAILFSLIGGVIGCALRVSPIKPLSWLVAGYVEFIR 62 Query: 64 NTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXXXXX 123 TP LV +FFV++GLP +G++L G+V LSLW F +E+FR G +V Sbjct: 63 GTPYLVQVFFVFYGLPSLGLRLSIFWSGVVALSLWASVFHIESFRAGLSSVSKDIRNASA 122 Query: 124 XXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMAYDF 183 RW +++P+ R + P+ NT VS IKNSAY+ IG+VELTFVAVDR+AY+F Sbjct: 123 SLGLRRWHHGLFVVLPIAARSALPSTLNTIVSTIKNSAYLQAIGLVELTFVAVDRIAYEF 182 Query: 184 KTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 ++ EM S L ++ERRLD Sbjct: 183 RSIEMFLSICVIYLAVVLVVSTLGHRLERRLD 214 >A8IK78.1 A8IK78_AZOC5 Putative ABC amino acid transporter permease/substrate-binding protein Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 121/188 (64%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 + FD Y+ Q P LM GL +T +++L+I+ SLLIGL GAA R VP++S++ YV+ Sbjct: 8 MDFDAAYLAQQWPALMGGLWVTCQVTLLSIVLSLLIGLFGAAFRLFSVPILSQLTFGYVE 67 Query: 61 IIRNTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXX 120 ++RNTP+LV +FF+++GLP IG+ + G++ LSLW GA+ VEN RGG + Sbjct: 68 LVRNTPILVQLFFIFYGLPAIGLGISQFWSGVLCLSLWAGAYQVENIRGGLLTIEKGLKE 127 Query: 121 XXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMA 180 Q R + +PL R S P+ NT++S++KNS+Y+ IG+ E+TF+AVDR+A Sbjct: 128 AAFSLSLSLRQYFRLVALPLAIRTSLPSMLNTSISLLKNSSYLQAIGLAEMTFIAVDRIA 187 Query: 181 YDFKTYEM 188 DF+ EM Sbjct: 188 TDFRAVEM 195 >Q3IVC2.1 Q3IVC2_RHOS4 ABC amino acid transporter, inner membrane subunit Length = 222 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 125/212 (58%) Query: 4 DFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVDIIR 63 D+GYI+ P LM GL MT+ +S+LAILFSLL+GL+G A R + +S V YV+ IR Sbjct: 5 DWGYILAAFPDLMRGLGMTLMVSLLAILFSLLLGLAGCALRVSGIRPLSYAVRGYVEFIR 64 Query: 64 NTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXXXXX 123 TP LV IFFV++GLP +G+ L G++ L++W AF +E+FR G +V Sbjct: 65 GTPYLVQIFFVFYGLPSLGLTLSIFWSGVLALTIWASAFHIESFRAGLASVGREMHDASA 124 Query: 124 XXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMAYDF 183 R ++ P+ R + P+ NT V IKNSAY+ IG+VELTFVAVDR+A DF Sbjct: 125 SLGLRRLPHALLVVAPIALRSALPSTLNTVVGTIKNSAYLQAIGLVELTFVAVDRIAQDF 184 Query: 184 KTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 ++ EM G S L ++ERRL+ Sbjct: 185 RSTEMFLSICVIYLVVILGVSALGHRLERRLN 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,089,075,360 Number of extensions: 39519459 Number of successful extensions: 142987 Number of sequences better than 1.0e-05: 6265 Number of HSP's gapped: 137163 Number of HSP's successfully gapped: 6273 Length of query: 242 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 110 Effective length of database: 1,817,122,223 Effective search space: 199883444530 Effective search space used: 199883444530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)