BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0099.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O29577.1 O29577_ARCFU Glutamine ABC transporter, ATP-binding pro... 320 5e-86 A8TE77.1 A8TE77_METVO ABC transporter related 309 2e-82 Q0W7K3.1 Q0W7K3_UNCMA ABC-type glutamate import system, ATP-bind... 305 3e-81 A1HT14.1 A1HT14_9FIRM ABC transporter related 305 3e-81 B0TGY9.1 B0TGY9_HELMI Glutamine abc transporter, ATP-binding pro... 304 4e-81 >O29577.1 O29577_ARCFU Glutamine ABC transporter, ATP-binding protein (GlnQ) Length = 242 Score = 320 bits (821), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 154/240 (64%), Positives = 191/240 (79%) Query: 7 KLTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFI 66 +L I +LHKRFGEL++L+GV +V EV+VIIGPSGSGKSTLLRCIN LE G+I + Sbjct: 3 QLEIIDLHKRFGELEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKILL 62 Query: 67 DEAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEEL 126 D I + + KVRQRIG+VFQ +NLFPHLT ++N+ LAP+K++K +K E L Sbjct: 63 DGVDITNSKIDINKVRQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKMSKREAEELGMRL 122 Query: 127 LKQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMK 186 L++VG+ DKAD YP+QLSGGQQQRVAIAR+L MNPEV+LFDEVTSALDPE V++VLDVMK Sbjct: 123 LEKVGLEDKADYYPAQLSGGQQQRVAIARALAMNPEVMLFDEVTSALDPELVKEVLDVMK 182 Query: 187 ALAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA G TM++VTHEMGF R+VGDR+IFMD GVIVE+G PEQIF NP+ ERTR+FL ++ Sbjct: 183 QLARDGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEEGKPEQIFSNPKHERTRKFLSMIL 242 >A8TE77.1 A8TE77_METVO ABC transporter related Length = 243 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 143/235 (60%), Positives = 184/235 (78%) Query: 12 NLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFIDEAAI 71 N+HK+FGE +L+GV+ +V EV+VI+GPSGSGKSTLLRCINGLE I DG++ + I Sbjct: 6 NIHKKFGENHVLKGVDLKVHKGEVVVILGPSGSGKSTLLRCINGLEVITDGKVIFENQDI 65 Query: 72 EYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELLKQVG 131 A + K+RQ+IGMVFQ +NLFPHLTVMEN+ AP+KV KK+K + A ELLK+VG Sbjct: 66 CDKKADINKIRQKIGMVFQQFNLFPHLTVMENITFAPIKVLKKSKEDAERLARELLKKVG 125 Query: 132 MSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKALAHT 191 + DK D+YP QLSGGQQQRVAIAR+L M P+ +LFDE TSALDPE V +VLDVMK LA+ Sbjct: 126 LEDKDDAYPIQLSGGQQQRVAIARALAMKPDAMLFDEPTSALDPELVNEVLDVMKQLAYE 185 Query: 192 GTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 G TM++VTHEMGF ++VGDRI+FMD+G I+E+G P +IF NP+ +RT+ F ++ Sbjct: 186 GMTMVVVTHEMGFAKEVGDRIVFMDEGNIIEEGAPSEIFTNPKHDRTKNFFGKIL 240 >Q0W7K3.1 Q0W7K3_UNCMA ABC-type glutamate import system, ATP-binding protein Length = 245 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 141/233 (60%), Positives = 186/233 (79%) Query: 10 IRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFIDEA 69 +++LHK+FGEL++L+G+N +V EV+VI+GPSGSGKST+LRCIN LE G+IF++ Sbjct: 8 LQDLHKQFGELEVLKGINMQVKKGEVVVILGPSGSGKSTILRCINRLEEPTSGKIFVEGI 67 Query: 70 AIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELLKQ 129 + L K+RQR+GMVFQ +NLFPH+T ++N+ LAP+KVQKK+KAE +ELLK+ Sbjct: 68 EVTDRRTDLNKIRQRVGMVFQQFNLFPHMTALQNVTLAPIKVQKKSKAEAETLGKELLKK 127 Query: 130 VGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKALA 189 VG+ K +SYP QLSGGQQQRVAIAR+L M P+V+LFDEVTSALDPE V++VLDVM+ LA Sbjct: 128 VGLEQKINSYPMQLSGGQQQRVAIARALAMKPDVMLFDEVTSALDPELVKEVLDVMRNLA 187 Query: 190 HTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFL 242 G TM++VTHEM F R+VGDR++ MD GVIVE+ P+Q F NP+ ERT++FL Sbjct: 188 MDGMTMMVVTHEMNFAREVGDRVVLMDGGVIVEENTPDQFFTNPRHERTKKFL 240 >A1HT14.1 A1HT14_9FIRM ABC transporter related Length = 239 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 143/239 (59%), Positives = 190/239 (79%), Gaps = 1/239 (0%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 ++I+N+HK+FG L +L+GVN V QEV+VIIGPSGSGKSTLLRCIN LE +G+I +D Sbjct: 2 ISIKNVHKKFGNLHVLKGVNAHVNEQEVVVIIGPSGSGKSTLLRCINYLEQPTEGEIIVD 61 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 + + ++ KVR+ +GMVFQ +NLFPH+TV++N+ LAP V+K +AE A +LL Sbjct: 62 GIPLN-SEVNINKVREEVGMVFQRFNLFPHMTVLDNITLAPTVVRKMPRAEAEKIAMDLL 120 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 +VG+SDKA +YP QLSGGQQQRVAIAR+L M P+V+LFDE TSALDPE +++VLDVMK Sbjct: 121 AKVGLSDKAHAYPEQLSGGQQQRVAIARALAMRPKVMLFDEPTSALDPEMIKEVLDVMKT 180 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA+ G TM++VTHEMGF R+VGDR+IFMD+G I+E+G PE++F N +EERTR FL ++ Sbjct: 181 LANEGMTMVVVTHEMGFAREVGDRVIFMDEGRIIEEGTPEELFTNAKEERTRSFLSKIL 239 >B0TGY9.1 B0TGY9_HELMI Glutamine abc transporter, ATP-binding protein Length = 245 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 143/239 (59%), Positives = 185/239 (77%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 + I+ LHK+FG L +LRGV+ +V +EV+ IIGPSGSGKSTLLRCIN LE +G I +D Sbjct: 7 IEIKGLHKKFGALHVLRGVDMKVQEREVVCIIGPSGSGKSTLLRCINHLEEPTEGYITVD 66 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 E + + + +VR +GMVFQ +NLFPH+TV++N+ LAP++V+K K E A ELL Sbjct: 67 EILLTHKETDINRVRAEVGMVFQRFNLFPHMTVLQNITLAPVQVRKMAKGEAESLARELL 126 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 +VG+S+K +YP QLSGGQQQRVAIAR+L M P+++LFDE TSALDPE V +VL+VMK Sbjct: 127 AKVGLSEKEQAYPEQLSGGQQQRVAIARALAMRPKIMLFDEPTSALDPEMVGEVLNVMKD 186 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA G TM++VTHEMGF R+VGDR+IFMD+GVIVE+G PEQ+FG Q+ERTR FL V+ Sbjct: 187 LAREGMTMVVVTHEMGFAREVGDRVIFMDEGVIVEEGTPEQLFGQAQQERTRAFLSKVL 245 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,395,538,293 Number of extensions: 55989384 Number of successful extensions: 571455 Number of sequences better than 1.0e-05: 99420 Number of HSP's gapped: 394133 Number of HSP's successfully gapped: 108697 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)