BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0098.p (307 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q63G94.1 Q63G94_BACCZ Amino acid ABC transporter, periplasmic so... 182 5e-44 Q73DV1.1 Q73DV1_BACC1 Glutamine ABC transporter, glutamine-bindi... 180 1e-43 B8FWT5.1 B8FWT5_DESHD Extracellular solute-binding protein family 3 179 3e-43 Q24NB6.1 Q24NB6_DESHY Putative uncharacterized protein 177 1e-42 C4BVK7.1 C4BVK7_9FUSO Amino acid ABC transporter substrate-bindi... 169 4e-40 >Q63G94.1 Q63G94_BACCZ Amino acid ABC transporter, periplasmic solute-binding protein Length = 286 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 142/227 (62%), Gaps = 1/227 (0%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 E +KERG+LVV V D PP GY+D++G N G+EI + ++ A+ GD + V+F+PV A + Sbjct: 39 EQIKERGELVVAVFTDKPPFGYVDKDGKNVGFEIDMAKRFAKDLLGDESKVKFVPVEAAS 98 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 RIPYL S K+DF+ A + T+ERKK +DFT +V S I S+ DL GKKVI Sbjct: 99 RIPYLQSDKVDFVLANMTATDERKKVVDFTNPHLKVAVQVLVKDGSPIQSVKDLEGKKVI 158 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 V KG+T YL +N+ E +K + N +A +ALKDGRADA D +++ + +P + + Sbjct: 159 VTKGTTADIYLTKNMKNVELIKFDKNTEALQALKDGRADAYAQDNLVLLSWANKNPGFHL 218 Query: 247 VGEQVAFAPM-AMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYL 292 + +++ + A+ +K E+ +++N LEK+ +E++ L +++L Sbjct: 219 LKDKLGGDDLIAIAVKKGNKEIHDWVNKELEKLGKENFLHTLYDKHL 265 >Q73DV1.1 Q73DV1_BACC1 Glutamine ABC transporter, glutamine-binding protein Length = 286 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 142/227 (62%), Gaps = 1/227 (0%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 E +KERG+LVV V D PP GY+D++G N G+EI + ++ A+ GD + V+F+PV A + Sbjct: 39 EEIKERGELVVAVFTDKPPFGYVDKDGKNVGFEIDMAKRFAKDLLGDESKVKFVPVEAAS 98 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 RIPYL S K+DF+ A + T+ERKK +DFT +V S I S+ DL GKKVI Sbjct: 99 RIPYLQSDKVDFVLANMTATDERKKVVDFTNPHLKVAVQVLVKDGSPIQSVKDLEGKKVI 158 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 V KG+T YL +N+ E +K + N +A +ALKDGRAD+ D +++ + +P + + Sbjct: 159 VTKGTTADIYLTKNMKNVELIKFDKNTEALQALKDGRADSYAQDNLVLLSWANKNPGFHL 218 Query: 247 VGEQVAFAPM-AMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYL 292 + +++ + A+ +K E+ +++N LEK+ +E++ L +++L Sbjct: 219 LKDKLGGDDLIAIAVKKGNKEVHDWVNKELEKLGKENFLHTLYDKHL 265 >B8FWT5.1 B8FWT5_DESHD Extracellular solute-binding protein family 3 Length = 297 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 144/244 (59%), Gaps = 9/244 (3%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 E +K+RG L +GV D PP GY+D NG N G+++ + R+ A+ GD + VEF+ V A N Sbjct: 51 EEIKQRGTLRIGVFSDKPPFGYVDANGQNQGFDVEIARRFAKDLLGDESKVEFVLVEAAN 110 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 R+PYL S K+D I A VTEERK+++DF + V P + ITSI L G+KVI Sbjct: 111 RVPYLESNKVDIIMANFTVTEERKQKVDFANPYMKVALGIVSPNGALITSIDQLQGQKVI 170 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 V KG+T YL +N P E +K + N +AF ALKDGR A+ HD + + K++P + + Sbjct: 171 VNKGTTAQDYLTKNHPDLELLKYDQNTEAFEALKDGRGAALAHDNTEVLAWAKSNPGFTV 230 Query: 247 ----VGEQVAFAPMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEE-YLPKAG-DLDP 300 +G AP +K + E+LN++N L ++ +ED+ K E+ LP G D+ P Sbjct: 231 GVPTLGSTDTIAP---AVKKGDTELLNWINQELAELAKEDFIKKAYEKTLLPVYGDDVKP 287 Query: 301 MEMI 304 E+I Sbjct: 288 EELI 291 >Q24NB6.1 Q24NB6_DESHY Putative uncharacterized protein Length = 276 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 9/244 (3%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 E +K+RG L +GV D PP GY+D NG N G+++ + R+ A+ GD + VEF+ V A N Sbjct: 30 EEIKQRGTLRIGVFSDKPPFGYVDANGQNQGFDVEIARRFAKDLLGDESKVEFVLVEAAN 89 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 R+PYL S K+D I A VTEERK+++DF + V P + ITSI L GKKVI Sbjct: 90 RVPYLESNKVDIIMANFTVTEERKQKVDFANPYMKVALGIVSPDGALITSIDQLQGKKVI 149 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 V KG+T YL +N P E +K + N +AF ALKDGR A+ HD + + K++P + + Sbjct: 150 VNKGTTAQDYLTKNHPDLELLKYDQNTEAFEALKDGRGAALAHDNTEVLAWAKSNPGFTV 209 Query: 247 ----VGEQVAFAPMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEE-YLPKAG-DLDP 300 +G AP +K + E+LN++N L ++ +E++ + E+ LP G D+ P Sbjct: 210 GVPALGSTDTIAP---AVKKGDTELLNWINQELAELAKENFVRKAYEKTLLPVYGDDVKP 266 Query: 301 MEMI 304 E+I Sbjct: 267 EELI 270 >C4BVK7.1 C4BVK7_9FUSO Amino acid ABC transporter substrate-binding protein, PAAT family Length = 283 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 139/227 (61%), Gaps = 1/227 (0%) Query: 67 EAVKERGKLVVGVKVDYPPLGYLDENGNNAGYEIGVVRKMAEYAFGDPNAVEFIPVNATN 126 E +++RGKL+VGV D PP G+++E N G++I + ++ A+ GD N +EF+PV A + Sbjct: 35 EKIQKRGKLIVGVFTDKPPFGFINEKNENDGFDIALAKQFAKDLLGDENKIEFVPVEAAS 94 Query: 127 RIPYLTSKKIDFIAATLGVTEERKKQLDFTTTFFDGGAVTVVPQDSGITSIPDLAGKKVI 186 R+P+L S K+D I A + VT +R+K +DF + + I S+ DL GKK+I Sbjct: 95 RVPFLQSDKVDIIMANMTVTPDREKVVDFANPYMKVAIQILGNDKDNIKSLNDLKGKKLI 154 Query: 187 VIKGSTGSTYLEENVPTAEQMKIESNADAFRALKDGRADAMFHDAVLMSEFIKTSPEYKI 246 V KG+T + +N P E ++ + N +AF+ALKDGR A+ HD++L+ + +T+P + I Sbjct: 155 VNKGTTADIFFTKNYPDIELLRFDHNTEAFQALKDGRGVALAHDSLLLYAWAQTNPGFTI 214 Query: 247 VGEQVAF-APMAMGARKNEPEMLNFLNGSLEKMRQEDYFKVLIEEYL 292 V E++ +P+A +K E+ ++N L ++ +++Y + +E L Sbjct: 215 VNEKLEEPSPIAPAVKKGNNELREWINNELTELGKQNYLHKIYDEKL 261 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,606,061,710 Number of extensions: 63995683 Number of successful extensions: 169153 Number of sequences better than 1.0e-05: 5462 Number of HSP's gapped: 163404 Number of HSP's successfully gapped: 5487 Length of query: 307 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 172 Effective length of database: 1,788,859,178 Effective search space: 307683778616 Effective search space used: 307683778616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)