BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0094.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7Z8G7.1 A7Z8G7_BACA2 YurK 226 2e-57 O32152.1 YURK_BACSU Uncharacterized HTH-type transcriptional reg... 216 1e-54 Q2BFD9.1 Q2BFD9_9BACI Putative uncharacterized protein 199 2e-49 Q31VQ8.1 Q31VQ8_SHIBS Putative transcriptional regulator 191 6e-47 B6ZTH0.1 B6ZTH0_ECO57 GntR-family transcriptional regulator FrlR 190 1e-46 >A7Z8G7.1 A7Z8G7_BACA2 YurK Length = 242 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 157/238 (65%) Query: 3 LNNLSQKPLYFQLKQILKEDVERGVYKAGQQLPPEAELCEMYGVSRITARRAITDLVEEG 62 LNN S KPLY QLKQI+ +D+++GVY +LP E ELCE Y VSRIT R+AI DLVEEG Sbjct: 2 LNNGSSKPLYIQLKQIIADDIKKGVYSPSVKLPTENELCETYNVSRITVRKAILDLVEEG 61 Query: 63 ILHRQQGKGTYVKEAKVMRELISVGGFSELTTASGKTPSSQILFNKVIQADEKLAKTFNI 122 L RQQGKGT+VK K+ RELI+V G+SE ++GK P QIL +++I+A + +A+ + Sbjct: 62 WLVRQQGKGTFVKSPKLKRELIAVNGYSEFMESTGKKPKHQILSHEIIEAPKSIAQKLRV 121 Query: 123 APHDPILNVHRLLFIDNEPFIIETSYYPLNLLPDLEKHIGESASTYSILKKRYNVELCRS 182 A P+L + R+LF D++P E ++YPL+L PD+ KHI S + ILK+ Y V + Sbjct: 122 ASESPVLELKRILFHDDQPLSFEIAHYPLSLFPDIGKHIKGGVSMHDILKQHYQVVPTHN 181 Query: 183 QKTLEVVAASEYDADLFRCDRGTPLFAIEKASFDKTDRLIHLSNSLYMTNKVIFTIDT 240 K L VV A + ++ CD G LF I+K +F D+ I+ S L T++V FTI++ Sbjct: 182 TKLLNVVYAKQEESRYLACDIGDALFEIDKTAFMSKDQPIYSSLFLMHTDRVTFTINS 239 >O32152.1 YURK_BACSU Uncharacterized HTH-type transcriptional regulator yurK Length = 242 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/238 (44%), Positives = 152/238 (63%) Query: 3 LNNLSQKPLYFQLKQILKEDVERGVYKAGQQLPPEAELCEMYGVSRITARRAITDLVEEG 62 LNN S PLY QLKQI+ +D+++GVY +LP E ELC Y VSRIT R+AI DLVEEG Sbjct: 2 LNNGSSTPLYIQLKQIITDDIKKGVYSPTAKLPTENELCTKYNVSRITVRKAILDLVEEG 61 Query: 63 ILHRQQGKGTYVKEAKVMRELISVGGFSELTTASGKTPSSQILFNKVIQADEKLAKTFNI 122 L RQQGKGT+VK K+ RELI+V G+SE ++GK P +L + +I A + +A+ I Sbjct: 62 YLIRQQGKGTFVKSPKLKRELIAVNGYSEFMESTGKKPKHHVLSHDIIPASKPIAEKLQI 121 Query: 123 APHDPILNVHRLLFIDNEPFIIETSYYPLNLLPDLEKHIGESASTYSILKKRYNVELCRS 182 P P++ + R+L+ D++P E ++YPL+L P ++ I + S + ILK++Y V + Sbjct: 122 QPESPVVELKRILYNDDQPLTFEVTHYPLDLFPGIDTFIADGVSMHDILKQQYKVVPTHN 181 Query: 183 QKTLEVVAASEYDADLFRCDRGTPLFAIEKASFDKTDRLIHLSNSLYMTNKVIFTIDT 240 K L VV A + ++ CD G LF I+K +F D+ I+ S L TN+V FTI++ Sbjct: 182 TKLLNVVYAQQEESKYLDCDIGDALFEIDKTAFTSNDQPIYCSLFLMHTNRVTFTINS 239 >Q2BFD9.1 Q2BFD9_9BACI Putative uncharacterized protein Length = 245 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/242 (41%), Positives = 149/242 (61%) Query: 1 MKLNNLSQKPLYFQLKQILKEDVERGVYKAGQQLPPEAELCEMYGVSRITARRAITDLVE 60 M LN + +PLY Q++Q+LK D++ G YK +Q+P EAELC++Y VSRIT R+AI +LV Sbjct: 4 MNLNPSTPQPLYMQIRQMLKNDIQSGKYKPDEQIPTEAELCDIYNVSRITIRKAIEELVN 63 Query: 61 EGILHRQQGKGTYVKEAKVMRELISVGGFSELTTASGKTPSSQILFNKVIQADEKLAKTF 120 EG L R +GT+V K EL+SV GFSE + G P+S+IL ++VI A ++A Sbjct: 64 EGTLTRVPRRGTFVASNKFHNELLSVSGFSEFSHQLGMIPNSRILRSEVISASAEVAGHL 123 Query: 121 NIAPHDPILNVHRLLFIDNEPFIIETSYYPLNLLPDLEKHIGESASTYSILKKRYNVELC 180 + P+L + RL+++++ P + ++Y L PDLEK I STY IL + Y+ E+ Sbjct: 124 RMEEGSPVLELERLMYVNDRPLFYDIAHYSLMRFPDLEKKIARLESTYQILLEDYSTEII 183 Query: 181 RSQKTLEVVAASEYDADLFRCDRGTPLFAIEKASFDKTDRLIHLSNSLYMTNKVIFTIDT 240 + K ++V+ A++ A L CD G LF I K +FD +D +HLS + TNKV T+ Sbjct: 184 SNDKIIDVIGATKDHARLLECDIGANLFRIVKIAFDSSDEPVHLSTFVCETNKVNLTVHR 243 Query: 241 KK 242 K Sbjct: 244 AK 245 >Q31VQ8.1 Q31VQ8_SHIBS Putative transcriptional regulator Length = 265 Score = 191 bits (484), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 148/236 (62%), Gaps = 1/236 (0%) Query: 7 SQKPLYFQLKQILKEDVERGVYKAGQQLPPEAELCEMYGVSRITARRAITDLVEEGILHR 66 S + LY ++Q L +D+ +GVY+AGQQ+P E ELC Y VSRIT R+AI+DLV +G+L R Sbjct: 30 SHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIR 89 Query: 67 QQGKGTYVKEAKVMRELISVGGFSELTTASGKTPSSQILFNKVIQADEKLAKTFNIAPHD 126 QGKGT+V+ KV L++V GF++ + GK +++ + + A K NI + Sbjct: 90 WQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATKEKVIEQERVSA-APFCKKLNIPGNS 148 Query: 127 PILNVHRLLFIDNEPFIIETSYYPLNLLPDLEKHIGESASTYSILKKRYNVELCRSQKTL 186 + ++ R++++D EP I++S+ PL+ PD ++ E +STY + ++R++ + +KT+ Sbjct: 149 EVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTRVVSDKKTI 208 Query: 187 EVVAASEYDADLFRCDRGTPLFAIEKASFDKTDRLIHLSNSLYMTNKVIFTIDTKK 242 ++ AA+ A +C+ G PLF I K +FD+ D+ +H+S N++ TID K+ Sbjct: 209 DIFAATRPQAKWLKCELGEPLFRISKIAFDQNDKPVHVSELFCRANRITLTIDNKR 264 >B6ZTH0.1 B6ZTH0_ECO57 GntR-family transcriptional regulator FrlR Length = 243 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 149/239 (62%), Gaps = 1/239 (0%) Query: 4 NNLSQKPLYFQLKQILKEDVERGVYKAGQQLPPEAELCEMYGVSRITARRAITDLVEEGI 63 + S + LY ++Q L +D+ +GVY+AGQQ+P E ELC Y VSRIT R+AI+DLV +G+ Sbjct: 5 DRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGV 64 Query: 64 LHRQQGKGTYVKEAKVMRELISVGGFSELTTASGKTPSSQILFNKVIQADEKLAKTFNIA 123 L R QGKGT+V+ KV L++V GF++ + GK +++ + I A + NI Sbjct: 65 LIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATKEKVIEQERISA-APFCEKLNIP 123 Query: 124 PHDPILNVHRLLFIDNEPFIIETSYYPLNLLPDLEKHIGESASTYSILKKRYNVELCRSQ 183 + + ++ R++++D EP I++S+ PL+ PD ++ E +STY + ++R++ + + Sbjct: 124 GNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTRVVSDK 183 Query: 184 KTLEVVAASEYDADLFRCDRGTPLFAIEKASFDKTDRLIHLSNSLYMTNKVIFTIDTKK 242 KT+++ AA+ A +C+ G PLF I K +FD+ D+ +H+S N++ TID K+ Sbjct: 184 KTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQNDKPVHVSELFCRANRITLTIDNKR 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,360,608,413 Number of extensions: 53150350 Number of successful extensions: 147715 Number of sequences better than 1.0e-05: 4051 Number of HSP's gapped: 145509 Number of HSP's successfully gapped: 4051 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)