BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0092.p (192 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9K647.1 Q9K647_BACHD NAD(P)H oxidoreductase 352 9e-96 Q5WBP5.1 Q5WBP5_BACSK NAD(P)H oxidoreductase EC=1.6.99.- 327 4e-88 C0ZD79.1 C0ZD79_BREBN Putative uncharacterized protein 262 1e-68 B3K3R7.1 B3K3R7_9BACI NAD(P)H dehydrogenase (Quinone) 255 1e-66 Q8ELN9.1 Q8ELN9_OCEIH NAD(P)H oxidoreductase EC=1.6.5.2 230 4e-59 >Q9K647.1 Q9K647_BACHD NAD(P)H oxidoreductase Length = 202 Score = 352 bits (903), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 166/192 (86%), Positives = 176/192 (91%) Query: 1 MKVLSVVSHPRQDSLTFGVAGRFVQGLADAGHDYEILDLHRIGFDPVLQGADEPDLSAAQ 60 MKVL+VVSHPR+DSLTF VA FV+GL +AGH+YEILDLH IGFDPVL+G DEPD S A+ Sbjct: 11 MKVLTVVSHPRKDSLTFEVAEHFVKGLTEAGHEYEILDLHEIGFDPVLKGVDEPDWSVAE 70 Query: 61 QSFSPEVEMEIRRMKEHDALAFIFPLWWWHLPAMLKGYIDRVWNNGFAYGSNHLHHQHVL 120 Q FSPEVEMEIRRMKEHDALA IFPLWWWHLPAMLKGYIDRVWNNGFAYG+NHLHHQHVL Sbjct: 71 QPFSPEVEMEIRRMKEHDALALIFPLWWWHLPAMLKGYIDRVWNNGFAYGANHLHHQHVL 130 Query: 121 WVALAGVSKDQMKKRNYDEMITHLLNVGIADYCGVPNSKVEFLYETLDSHPGHYEMLLNQ 180 W+ LAGVSK+QMKKRNYDEMITHLLNVGIADYCGV NSKVEFLYETLDSHP HYEMLLNQ Sbjct: 131 WIGLAGVSKEQMKKRNYDEMITHLLNVGIADYCGVSNSKVEFLYETLDSHPNHYEMLLNQ 190 Query: 181 AYHLGLNYAKDH 192 AY LGLNY K H Sbjct: 191 AYRLGLNYDKGH 202 >Q5WBP5.1 Q5WBP5_BACSK NAD(P)H oxidoreductase EC=1.6.99.- Length = 197 Score = 327 bits (837), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 151/191 (79%), Positives = 171/191 (89%) Query: 1 MKVLSVVSHPRQDSLTFGVAGRFVQGLADAGHDYEILDLHRIGFDPVLQGADEPDLSAAQ 60 M VL+VVSHPR+DSLTF VA RF QGLADAGH+YE+LDLH GFDPVL+G DEPD + A+ Sbjct: 1 MNVLTVVSHPRKDSLTFKVAERFAQGLADAGHEYELLDLHESGFDPVLKGIDEPDWTVAE 60 Query: 61 QSFSPEVEMEIRRMKEHDALAFIFPLWWWHLPAMLKGYIDRVWNNGFAYGSNHLHHQHVL 120 Q FSPEVE EI+R+K+HDALAFI+P+WWWHLPAMLKGYIDRV+NNGFAYGS+HLHHQHVL Sbjct: 61 QPFSPEVEAEIKRLKKHDALAFIYPIWWWHLPAMLKGYIDRVFNNGFAYGSSHLHHQHVL 120 Query: 121 WVALAGVSKDQMKKRNYDEMITHLLNVGIADYCGVPNSKVEFLYETLDSHPGHYEMLLNQ 180 W+ LAGVSK+QMKKR+YDE +THLLNVGIADYCG+ NSKVEFLYETLDS P HYE LL+Q Sbjct: 121 WLGLAGVSKEQMKKRDYDEKMTHLLNVGIADYCGISNSKVEFLYETLDSKPEHYERLLDQ 180 Query: 181 AYHLGLNYAKD 191 AY GLNY KD Sbjct: 181 AYRFGLNYGKD 191 >C0ZD79.1 C0ZD79_BREBN Putative uncharacterized protein Length = 196 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 119/190 (62%), Positives = 151/190 (79%) Query: 1 MKVLSVVSHPRQDSLTFGVAGRFVQGLADAGHDYEILDLHRIGFDPVLQGADEPDLSAAQ 60 M+VL+VV+HPR +SLTF VA RFVQGL DAGH+ E+LDLHR GF PVL DEPD + Sbjct: 1 MRVLTVVTHPRTNSLTFAVAERFVQGLKDAGHEVEVLDLHRSGFHPVLWEEDEPDWNNGD 60 Query: 61 QSFSPEVEMEIRRMKEHDALAFIFPLWWWHLPAMLKGYIDRVWNNGFAYGSNHLHHQHVL 120 + +S EVE+E+ RM++HDALAFIFP+WW+ +PAMLKGYIDRVWNNGFAYGS LHH+H L Sbjct: 61 KKYSEEVEIEMERMRKHDALAFIFPIWWFSMPAMLKGYIDRVWNNGFAYGSRKLHHKHAL 120 Query: 121 WVALAGVSKDQMKKRNYDEMITHLLNVGIADYCGVPNSKVEFLYETLDSHPGHYEMLLNQ 180 W+ LA +D +KRNYD+M+ H LNVGI+ Y G+ +S+VEFLY+TL +P H E LL++ Sbjct: 121 WIGLAAAPEDHFQKRNYDQMMAHHLNVGISSYVGIGDSRVEFLYDTLAQNPAHIEQLLDR 180 Query: 181 AYHLGLNYAK 190 AY+LG +Y K Sbjct: 181 AYYLGFHYGK 190 >B3K3R7.1 B3K3R7_9BACI NAD(P)H dehydrogenase (Quinone) Length = 198 Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/190 (64%), Positives = 150/190 (78%), Gaps = 1/190 (0%) Query: 1 MKVLSVVSHPRQDSLTFGVAGRFVQGLADAGHDYEILDLHRIGFDPVLQGADEPDLSAAQ 60 MKVL+VV+HPR +S TF V RFVQGL DAGH+ E+LDLHRIGFDPVL ADEPD S Sbjct: 2 MKVLTVVTHPRVNSFTFAVTERFVQGLQDAGHETEVLDLHRIGFDPVLWEADEPDWSDPG 61 Query: 61 QSFSPEVEMEIRRMKEHDALAFIFPLWWWHLPAMLKGYIDRVWNNGFAY-GSNHLHHQHV 119 + FS EVE EI RMK+HDALA+IFP+WW+ +PAMLKGYIDRVWN+GFAY G + LHH+ Sbjct: 62 KVFSAEVENEIARMKQHDALAYIFPVWWYGVPAMLKGYIDRVWNHGFAYGGGSKLHHKKA 121 Query: 120 LWVALAGVSKDQMKKRNYDEMITHLLNVGIADYCGVPNSKVEFLYETLDSHPGHYEMLLN 179 LW+ALAG S+D KR+YD M++H LNVG+A+Y G+ +S+VEF Y+TL+ H E LL Sbjct: 122 LWIALAGASEDHFAKRSYDTMLSHSLNVGMANYSGIEDSRVEFFYDTLEGRAEHMESLLE 181 Query: 180 QAYHLGLNYA 189 +AY LGL+YA Sbjct: 182 RAYQLGLHYA 191 >Q8ELN9.1 Q8ELN9_OCEIH NAD(P)H oxidoreductase EC=1.6.5.2 Length = 190 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 106/190 (55%), Positives = 135/190 (71%) Query: 1 MKVLSVVSHPRQDSLTFGVAGRFVQGLADAGHDYEILDLHRIGFDPVLQGADEPDLSAAQ 60 MKVL++V+HPR++SLT V RF++GL DAGH E +DL+R F+ L ADEP A + Sbjct: 1 MKVLTIVAHPREESLTMKVTNRFIEGLQDAGHTVEFIDLYRHEFEAALPVADEPIWDAEE 60 Query: 61 QSFSPEVEMEIRRMKEHDALAFIFPLWWWHLPAMLKGYIDRVWNNGFAYGSNHLHHQHVL 120 Q FSPEV EI RMK DALAFIFPLWWW +P ++KGYIDRVWN GFAYG+++LHH+HVL Sbjct: 61 QHFSPEVTKEIERMKSADALAFIFPLWWWSMPGIMKGYIDRVWNFGFAYGNSNLHHEHVL 120 Query: 121 WVALAGVSKDQMKKRNYDEMITHLLNVGIADYCGVPNSKVEFLYETLDSHPGHYEMLLNQ 180 W+ LA K +++KR Y+ M+ H NVG+ADYCG+P+S L ET + + L Q Sbjct: 121 WLGLAAADKKKLEKRKYNTMMEHYFNVGLADYCGIPSSTFHLLTETNKVNSQQLDNWLMQ 180 Query: 181 AYHLGLNYAK 190 AY LG NY K Sbjct: 181 AYELGRNYEK 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,239,290,403 Number of extensions: 51660699 Number of successful extensions: 112488 Number of sequences better than 1.0e-05: 696 Number of HSP's gapped: 111908 Number of HSP's successfully gapped: 696 Length of query: 192 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 64 Effective length of database: 1,854,806,283 Effective search space: 118707602112 Effective search space used: 118707602112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)