BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0091.p
         (76 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5WBP6.1 Q5WBP6_BACSK Transcriptional regulator                       144   2e-33
Q9K648.1 Q9K648_BACHD BH3884 protein                                  142   9e-33
A4ILF2.1 A4ILF2_GEOTN Transcriptional regulator MarR family           107   5e-22
B4BI90.1 B4BI90_9BACI Transcriptional regulator, HxlR family          107   5e-22
C0ZJH9.1 C0ZJH9_BREBN Putative uncharacterized protein ytcD           103   6e-21

>Q5WBP6.1 Q5WBP6_BACSK Transcriptional regulator
          Length = 128

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 73/76 (96%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           +PG+TQKMLTTQLRGLEKDEIVTRKVYNE+PP+VEYELT YGWGLKPALDHLCYWGEDHL
Sbjct: 50  IPGITQKMLTTQLRGLEKDEIVTRKVYNEVPPKVEYELTPYGWGLKPALDHLCYWGEDHL 109

Query: 61  EKIHGDKSKVLEEFRG 76
           EK++GDKSKVL EF+ 
Sbjct: 110 EKVYGDKSKVLAEFQS 125


>Q9K648.1 Q9K648_BACHD BH3884 protein
          Length = 128

 Score =  142 bits (358), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 72/76 (94%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           MP +TQKMLTTQLRGLEKDEI+TRKVYNE+PP+VEYELT YGWGLKPALD LCYWGEDHL
Sbjct: 50  MPAITQKMLTTQLRGLEKDEIITRKVYNEVPPKVEYELTPYGWGLKPALDLLCYWGEDHL 109

Query: 61  EKIHGDKSKVLEEFRG 76
           EK++GDKSKVLEEF+ 
Sbjct: 110 EKVYGDKSKVLEEFQS 125


>A4ILF2.1 A4ILF2_GEOTN Transcriptional regulator MarR family
          Length = 123

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           MPG+TQKMLT QLR LE D I+ R VYN++PP+VEYEL+ YGW LK  LD LC WGE H+
Sbjct: 43  MPGITQKMLTQQLRELEADGIINRIVYNQVPPKVEYELSEYGWSLKEILDSLCAWGEKHI 102

Query: 61  EKIHGDKSKVLEE 73
            K++GDK  VLEE
Sbjct: 103 TKVYGDKFTVLEE 115


>B4BI90.1 B4BI90_9BACI Transcriptional regulator, HxlR family
          Length = 123

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           MPG+TQKMLT QLR LE D I+ R VYN++PP+VEYEL+ YGW LK  LD LC WGE H+
Sbjct: 43  MPGITQKMLTQQLRELEADGIINRIVYNQVPPKVEYELSEYGWSLKEILDSLCAWGEKHI 102

Query: 61  EKIHGDKSKVLEE 73
            K++GDK  VLEE
Sbjct: 103 TKVYGDKFTVLEE 115


>C0ZJH9.1 C0ZJH9_BREBN Putative uncharacterized protein ytcD
          Length = 119

 Score =  103 bits (256), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query: 1   MPGVTQKMLTTQLRGLEKDEIVTRKVYNEIPPRVEYELTHYGWGLKPALDHLCYWGEDHL 60
           MPG+TQKMLT QLR LE+D I+ R +YN++PP+VEYEL+ YGW LK  LD LC WGE H+
Sbjct: 42  MPGITQKMLTQQLRELEEDGIICRIIYNQVPPKVEYELSEYGWTLKSILDSLCLWGEKHI 101

Query: 61  EKIHGDKSKVLEE 73
            K +GDK  VLEE
Sbjct: 102 IKEYGDKYAVLEE 114


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 483,041,106
Number of extensions: 16915406
Number of successful extensions: 34760
Number of sequences better than 1.0e-05: 1425
Number of HSP's gapped: 34781
Number of HSP's successfully gapped: 1426
Length of query: 76
Length of database: 3,060,696,203
Length adjustment: 47
Effective length of query: 29
Effective length of database: 2,617,908,498
Effective search space: 75919346442
Effective search space used: 75919346442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)