BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0090.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3A4D1.1 C3A4D1_BACMY Transcriptional regulator 266 7e-70 C2XSE5.1 C2XSE5_BACCE Transcriptional regulator 266 7e-70 C2VA59.1 C2VA59_BACCE Transcriptional regulator 266 7e-70 C2UTQ9.1 C2UTQ9_BACCE Transcriptional regulator 266 7e-70 C2TVN7.1 C2TVN7_BACCE Transcriptional regulator 266 7e-70 >C3A4D1.1 C3A4D1_BACMY Transcriptional regulator Length = 165 Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 129/165 (78%), Positives = 146/165 (88%) Query: 14 MHQREGGQAMNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSN 73 MHQR GGQ MNKEE+V + FRDL+NK+ WLNK KME SLKGY SE+HCIE I +NVDSN Sbjct: 1 MHQRGGGQDMNKEEKVIVGFRDLYNKIVWLNKDKMEDSLKGYNSSEVHCIEYIEKNVDSN 60 Query: 74 VTKLAESLYMTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHK 133 VTKLAES YMTRGAIS+ITKKL++KGLIESYQK DNKKEIYFRLT QG+VI KIHEDLHK Sbjct: 61 VTKLAESFYMTRGAISRITKKLIKKGLIESYQKSDNKKEIYFRLTEQGKVIYKIHEDLHK 120 Query: 134 EFQERDKAVFEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKS 178 EF+ERDK VF+ VTEE+FD++LSF+EKYSRHLD EIKKQG+ IKS Sbjct: 121 EFEERDKVVFDQVTEEEFDSILSFVEKYSRHLDTEIKKQGVHIKS 165 >C2XSE5.1 C2XSE5_BACCE Transcriptional regulator Length = 165 Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 129/165 (78%), Positives = 146/165 (88%) Query: 14 MHQREGGQAMNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSN 73 MHQR GGQ MNKEE+V + FRDL+NK+ WLNK KME SLKGY SE+HCIE I +NVDSN Sbjct: 1 MHQRGGGQDMNKEEKVIVGFRDLYNKIVWLNKDKMEDSLKGYNSSEVHCIEYIEKNVDSN 60 Query: 74 VTKLAESLYMTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHK 133 VTKLAES YMTRGAIS+ITKKL++KGLIESYQK DNKKEIYFRLT QG+VI KIHEDLHK Sbjct: 61 VTKLAESFYMTRGAISRITKKLIKKGLIESYQKSDNKKEIYFRLTEQGKVIYKIHEDLHK 120 Query: 134 EFQERDKAVFEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKS 178 EF+ERDK VF+ VTEE+FD++LSF+EKYSRHLD EIKKQG+ IKS Sbjct: 121 EFEERDKVVFDQVTEEEFDSILSFVEKYSRHLDTEIKKQGVHIKS 165 >C2VA59.1 C2VA59_BACCE Transcriptional regulator Length = 165 Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 128/165 (77%), Positives = 146/165 (88%) Query: 14 MHQREGGQAMNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSN 73 MHQR GGQ MNKEE++ + FRDL+NK+ WLNK KME SLKGY SE+HCIE I +NVDSN Sbjct: 1 MHQRGGGQGMNKEEKIIVGFRDLYNKIVWLNKDKMEDSLKGYNSSEVHCIEYIEKNVDSN 60 Query: 74 VTKLAESLYMTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHK 133 VTKLAES YMTRGAIS+ITKKL++KGLIESYQK DNKKEIYFRLT QG+VI KIHEDLHK Sbjct: 61 VTKLAESFYMTRGAISRITKKLIKKGLIESYQKSDNKKEIYFRLTEQGKVIYKIHEDLHK 120 Query: 134 EFQERDKAVFEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKS 178 EF+ERDK VF+ VTEE+FD++LSF+EKYSRHLD EIKKQG+ IKS Sbjct: 121 EFEERDKVVFDQVTEEEFDSILSFVEKYSRHLDTEIKKQGVHIKS 165 >C2UTQ9.1 C2UTQ9_BACCE Transcriptional regulator Length = 165 Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 128/165 (77%), Positives = 146/165 (88%) Query: 14 MHQREGGQAMNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSN 73 MHQR GGQ MNKEE++ + FRDL+NK+ WLNK KME SLKGY SE+HCIE I +NVDSN Sbjct: 1 MHQRGGGQGMNKEEKIIVGFRDLYNKIVWLNKDKMEDSLKGYNSSEVHCIEYIEKNVDSN 60 Query: 74 VTKLAESLYMTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHK 133 VTKLAES YMTRGAIS+ITKKL++KGLIESYQK DNKKEIYFRLT QG+VI KIHEDLHK Sbjct: 61 VTKLAESFYMTRGAISRITKKLIKKGLIESYQKSDNKKEIYFRLTEQGKVIYKIHEDLHK 120 Query: 134 EFQERDKAVFEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKS 178 EF+ERDK VF+ VTEE+FD++LSF+EKYSRHLD EIKKQG+ IKS Sbjct: 121 EFEERDKVVFDQVTEEEFDSILSFVEKYSRHLDTEIKKQGVHIKS 165 >C2TVN7.1 C2TVN7_BACCE Transcriptional regulator Length = 165 Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 128/165 (77%), Positives = 146/165 (88%) Query: 14 MHQREGGQAMNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSN 73 MHQR GGQ MNKEE++ + FRDL+NK+ WLNK KME SLKGY SE+HCIE I +NVDSN Sbjct: 1 MHQRGGGQGMNKEEKIIVGFRDLYNKIVWLNKDKMEDSLKGYNSSEVHCIEYIEKNVDSN 60 Query: 74 VTKLAESLYMTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHK 133 VTKLAES YMTRGAIS+ITKKL++KGLIESYQK DNKKEIYFRLT QG+VI KIHEDLHK Sbjct: 61 VTKLAESFYMTRGAISRITKKLIKKGLIESYQKSDNKKEIYFRLTEQGKVIYKIHEDLHK 120 Query: 134 EFQERDKAVFEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKS 178 EF+ERDK VF+ VTEE+FD++LSF+EKYSRHLD EIKKQG+ IKS Sbjct: 121 EFEERDKVVFDQVTEEEFDSILSFVEKYSRHLDTEIKKQGVHIKS 165 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 974,892,741 Number of extensions: 37031973 Number of successful extensions: 144424 Number of sequences better than 1.0e-05: 362 Number of HSP's gapped: 144584 Number of HSP's successfully gapped: 362 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)