BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0089.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJX5.1 B3KJX5_9BACI Xylose isomerase domain protein TIM barrel 477 e-133 B1D9G3.1 B1D9G3_9BACL Xylose isomerase domain protein TIM barrel 410 e-113 A3I7X4.1 A3I7X4_9BACI Putative uncharacterized protein 369 e-100 B7R6C1.1 B7R6C1_9THEO AP endonuclease, family 2 318 4e-85 C2SJ90.1 C2SJ90_BACCE Putative uncharacterized protein 167 1e-39 >B3KJX5.1 B3KJX5_9BACI Xylose isomerase domain protein TIM barrel Length = 298 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/294 (77%), Positives = 261/294 (88%), Gaps = 1/294 (0%) Query: 1 VITNKIGVIVDSFQVGVKEGLRKAKEAGADGVQIYAVQGEFDPANLSPAARREWKDYIAS 60 ++ NKIGVIVDSF+VGV+EGL KA+E GADGVQIYAV GE DPANLS +AR+E KDYI S Sbjct: 5 IMPNKIGVIVDSFRVGVREGLVKAREVGADGVQIYAVHGEMDPANLSASARKELKDYIDS 64 Query: 61 MGLEISALVGDLGGHGFQDPAQNRAKIDKSKRIMELAKELGTDIVTTHIGIVPPNRDSQI 120 +GLEISALVGDLGGHGFQDPA+N AKI+KSKRIMEL ELGT+I+TTHIGIVP + ++ Sbjct: 65 LGLEISALVGDLGGHGFQDPAENAAKIEKSKRIMELGLELGTNIITTHIGIVPQDHTGRV 124 Query: 121 YETMHTACEELSRYAHEMNAYFAIETGPETAAHLKMFLDGLGTKGVSVNFDPANMVMVTG 180 YETMH AC ELS +A+ MNA+FAIETGPE +AHLK FLDGLG+ GVSVNFDPANMVMVTG Sbjct: 125 YETMHKACVELSTFANSMNAFFAIETGPEPSAHLKSFLDGLGSNGVSVNFDPANMVMVTG 184 Query: 181 DDPVQGVYALKDYIVHTHAKDGVKLAE-IDPRNVYGQYGYEAPALDHEKVAEMAETGQAF 239 DDPVQGVY LKDYIVHTHAKDG+KLA+ IDPR+VYG +GYEAPALDH+K+A+MAE+G+ F Sbjct: 185 DDPVQGVYNLKDYIVHTHAKDGIKLADYIDPRDVYGDFGYEAPALDHDKIADMAESGEKF 244 Query: 240 REVPLGTGSVDWNGYLQALNDIGYKGYLTIEREVGSNPEADIRLAVEFLKGFRA 293 REVPLG G V+WN YLQAL DIGY GYLTIEREV +NPEADI+LAV+FLK FRA Sbjct: 245 REVPLGEGGVNWNAYLQALKDIGYTGYLTIEREVKTNPEADIKLAVDFLKTFRA 298 >B1D9G3.1 B1D9G3_9BACL Xylose isomerase domain protein TIM barrel Length = 298 Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/292 (70%), Positives = 233/292 (79%), Gaps = 3/292 (1%) Query: 2 ITNKIGVIVDSFQVGVKEGLRKAKEAGADGVQIYAVQGEFDPANLSPAARREWKDYIASM 61 I N IGVIV+SF +G+ EG++KA E GA+GVQIYAV GE DPANLS +ARRE KD IAS+ Sbjct: 9 INNPIGVIVESFGIGLNEGVKKAVEVGAEGVQIYAVSGETDPANLSASARRELKDRIASL 68 Query: 62 GLEISALVGDLGGHGFQDPAQNRAKIDKSKRIMELAKELGTDIVTTHIGIVPPNRDSQIY 121 GL ISAL GDLGGHGFQD N AKI+KSKRI+ELA +LGT+IVTTHIGIVP + +S IY Sbjct: 69 GLTISALCGDLGGHGFQDAEANPAKIEKSKRILELALDLGTNIVTTHIGIVPDDTNSPIY 128 Query: 122 ETMHTACEELSRYAHEMNAYFAIETGPETAAHLKMFLDGLGTKGVSVNFDPANMVMVTGD 181 M ++CEELS YA M AYFAIETGPE AA LK FLD L T GVSVNFDPANMVMVTGD Sbjct: 129 AAMQSSCEELSSYASSMGAYFAIETGPEPAARLKTFLDSLTTNGVSVNFDPANMVMVTGD 188 Query: 182 DPVQGVYALKDYIVHTHAKDGVKL-AEIDPRNVYGQYGYEAPALDHEKVAEMAETGQAFR 240 DPVQGVY LKDYIVHTHAKDG+KL AEIDPR VYG G+ + H+ +A+MA G FR Sbjct: 189 DPVQGVYLLKDYIVHTHAKDGIKLAAEIDPRVVYGYLGFA--GMSHDIIADMASDGALFR 246 Query: 241 EVPLGTGSVDWNGYLQALNDIGYKGYLTIEREVGSNPEADIRLAVEFLKGFR 292 EVPLG G V ++ YL+AL +IGYKGYLTIEREVG PE DIR AVEFL+ FR Sbjct: 247 EVPLGEGGVPFDRYLKALQEIGYKGYLTIEREVGQRPEEDIRKAVEFLRAFR 298 >A3I7X4.1 A3I7X4_9BACI Putative uncharacterized protein Length = 293 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/291 (61%), Positives = 221/291 (75%), Gaps = 1/291 (0%) Query: 2 ITNKIGVIVDSFQVGVKEGLRKAKEAGADGVQIYAVQGEFDPANLSPAARREWKDYIASM 61 + N+IGVIVDSF++ ++EGL KAKE GA GVQ+YAV GE P +L+ R E K YI + Sbjct: 4 LNNRIGVIVDSFRLPIREGLLKAKEVGAQGVQMYAVSGELVPDHLNAIQRAELKQYIVDL 63 Query: 62 GLEISALVGDLGGHGFQDPAQNRAKIDKSKRIMELAKELGTDIVTTHIGIVPPNRDSQIY 121 GLEISAL GDLGGHGFQD +N KI KSK IM+LAK+LGT IVTTHIGI+P + + IY Sbjct: 64 GLEISALCGDLGGHGFQDKHENEWKIKKSKDIMQLAKDLGTSIVTTHIGIIPEDENDPIY 123 Query: 122 ETMHTACEELSRYAHEMNAYFAIETGPETAAHLKMFLDGLGTKGVSVNFDPANMVMVTGD 181 +TM ACEEL ++A ++AYFAIETGPET+ LK FLD L T GVSVNFDPANMVMVT D Sbjct: 124 QTMLEACEELGQFATSLDAYFAIETGPETSQTLKKFLDKLSTDGVSVNFDPANMVMVTKD 183 Query: 182 DPVQGVYALKDYIVHTHAKDGVKLAEIDPRNVYGQYGYEAPALDHEKVAEMAETGQAFRE 241 DPV GV L++YIVHTH KDG++L + +P++VYG GY++ H+K+ EM E G FRE Sbjct: 184 DPVAGVKLLRNYIVHTHVKDGIQLQQTNPKDVYGYLGYDS-GTSHDKIEEMVENGDFFRE 242 Query: 242 VPLGTGSVDWNGYLQALNDIGYKGYLTIEREVGSNPEADIRLAVEFLKGFR 292 +PLG G V++ Y AL +IGY GYLTIEREV SNPE DIR AV+F++ F+ Sbjct: 243 LPLGQGDVNFELYFSALQEIGYNGYLTIEREVRSNPEKDIREAVQFIEMFK 293 >B7R6C1.1 B7R6C1_9THEO AP endonuclease, family 2 Length = 282 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 160/294 (54%), Positives = 200/294 (68%), Gaps = 22/294 (7%) Query: 5 KIGVIVDSFQVGVKEGLRKAKEAGADGVQIYAVQGEFDPANLSPAARREWKDYIASMGLE 64 KIGVIVDSF++ ++E ++KAKE GA+G+QIYAV GE P NL+P+ R+E +YI GL Sbjct: 2 KIGVIVDSFRLPLREAIKKAKEVGAEGIQIYAVSGEMAPENLTPSKRKELLNYIKDNGLV 61 Query: 65 ISALVGDLGGHGFQDPAQNRAKIDKSKRIMELAKELGTDIVTTHIGIVPPNRDSQIYETM 124 +SALVGD GGHGF N +I+ SKRIM+LAK+L ++VTTHIG++P + + Y+ + Sbjct: 62 VSALVGDFGGHGFAIKEDNPKRIEASKRIMDLAKDLEANVVTTHIGVIPSDPNHDRYKIL 121 Query: 125 HTACEELSRYAHEMNAYFAIETGPETAAHLKMFLDGLGTKGVSVNFDPANMVMVTGDDPV 184 ACE+L Y + AYFAIETGPE LK FLD L ++ V+VN+DPAN+VMVTGDDPV Sbjct: 122 QEACEQLGEYGDNVGAYFAIETGPEKTETLKKFLDSLKSRSVAVNYDPANLVMVTGDDPV 181 Query: 185 QGVYALKDYIVHTHAKDGVKLAEIDPRNVYGQYGYEAPALDHEKVAEMAETG-------Q 237 +GVY LK YIVHTHAKDG+ + DP +Y + AE G Sbjct: 182 KGVYTLKGYIVHTHAKDGIMKKQTDPEIIYNFF---------------AEGGIGDLRLED 226 Query: 238 AFREVPLGTGSVDWNGYLQALNDIGYKGYLTIEREVGSNPEADIRLAVEFLKGF 291 F EVPLG G VD+ YL AL DIGY G+LTIEREVG NPE DI+ AVEFLKG Sbjct: 227 YFEEVPLGKGQVDFKAYLAALRDIGYDGFLTIEREVGENPEKDIKEAVEFLKGM 280 >C2SJ90.1 C2SJ90_BACCE Putative uncharacterized protein Length = 264 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/272 (34%), Positives = 152/272 (55%), Gaps = 31/272 (11%) Query: 2 ITNKIGVIVDSFQVGVKEGLRKAKEAGADGVQIYAVQGEFDPANLSPAARREWKDYIASM 61 + K+G+ +++ + V EG+RKA+E + +Q+YA+ F+ AN+S KD ++ Sbjct: 1 MARKLGMFLNTKHIEVNEGIRKAREWDLEYIQLYAMNENFNLANISKLEWITLKDSLSFN 60 Query: 62 GLEISALVGDLGGHGFQDPAQNRAKIDKSKRIMELAKELGTDIVTTHIGIVPPNRDSQIY 121 G+++ +L G G A++ + I++ KR+ + ELG +I+T HIG +P S+ Y Sbjct: 61 GIKVPSLAISFGESGIV-GAEDESVIEQLKRVADKGLELGANIITAHIGKIPDVEKSERY 119 Query: 122 ETMHTACEELSRYAHEMNAYFAIETGPETAAHLKMFLDGLGTKGVSVNFDPANMVMVTGD 181 E M AC E+ + ++ FAIETG E A LK FL+ + +KG++VNFDPAN++ + Sbjct: 120 EKMQRACYEIGDLSLKLGGVFAIETGSEKALVLKRFLETINSKGLAVNFDPANLISDANE 179 Query: 182 DPVQGVYALKDYIVHTHAKD--GVKLAEIDPRNVYGQYGYEAPALDHEKVAEMAETGQAF 239 +PV+G+ LKDYIV TH KD GVK +++ + Sbjct: 180 NPVEGLLLLKDYIVQTHIKDCKGVK----------------------------SDSSSKY 211 Query: 240 REVPLGTGSVDWNGYLQALNDIGYKGYLTIER 271 EV +G G VD++ + + L++IG+ GY IER Sbjct: 212 IEVAVGNGEVDFDIFFKVLDEIGFDGYNMIER 243 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,841,754,917 Number of extensions: 79789974 Number of successful extensions: 206401 Number of sequences better than 1.0e-05: 102 Number of HSP's gapped: 206369 Number of HSP's successfully gapped: 102 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)