BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0086.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJX8.1 B3KJX8_9BACI AraC protein arabinose-binding/dimerisation 352 3e-95 C0CKL9.1 C0CKL9_9FIRM Putative uncharacterized protein 204 6e-51 B2TLF6.1 B2TLF6_CLOBB AraC-type DNA-binding domain-containing pr... 201 9e-50 B6FM02.1 B6FM02_9CLOT Putative uncharacterized protein 197 7e-49 A6LR84.1 A6LR84_CLOB8 Transcriptional regulator, AraC family 197 1e-48 >B3KJX8.1 B3KJX8_9BACI AraC protein arabinose-binding/dimerisation Length = 285 Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 168/283 (59%), Positives = 210/283 (74%), Gaps = 1/283 (0%) Query: 12 DKHLREPMDMPDPGFPIKVHTQRFDREGVVTFPHHWHEHLEFLFIESGEAVFECGRTPFS 71 DK LREPM MPDP FPIKVH FD G V F HHWHEHLE L+ SGEA ECG T F+ Sbjct: 2 DKTLREPMTMPDPQFPIKVHRCEFDGRGQVLFNHHWHEHLEILYFVSGEATLECGSTTFT 61 Query: 72 VRAGDLIAVNSNELHYGISASDDLLYYAIIADTALLHSAASDSAETKFIAPIRQNRLLFS 131 + GD+I +N NELHYG+S SD L YYA+IAD +LL S + D+ E KFI PI QNRL+F Sbjct: 62 AKEGDMIVINRNELHYGLSQSDHLFYYALIADFSLLQSHSLDAPEMKFITPITQNRLIFE 121 Query: 132 NHVSGDQHISGCALTIIRELERREFGYELAVKAEXXXXXXXXXXXHGVTELSQAEQTRRI 191 N +SG ++ L+II+ELER+EFGYELA+K+E + T L+Q E R+ Sbjct: 122 NRISGADALAPM-LSIIKELERQEFGYELAIKSELYRLLTLLLRGYVATVLTQDEYVERM 180 Query: 192 QTIERFAPVLRHIDTHYQEPIFVEGLAALAGLSRFHFSRLFKELTGHTVSEYVNAVRLDR 251 + +ERFAP+ ++I+ HY+E + VE L+ +AGLSRFHFSRLFKE++G TV+EYVN RL+R Sbjct: 181 KNVERFAPIFKYIEEHYREDLSVEQLSGMAGLSRFHFSRLFKEISGRTVTEYVNETRLNR 240 Query: 252 ADYMLRHTQLTVSEIAAATGFNDIYYFSRTFKKHKQRTPSSVR 294 ADY+LR + LTVSEIAAATGFNDIYYFSRTFKK+K+ PS++R Sbjct: 241 ADYLLRESPLTVSEIAAATGFNDIYYFSRTFKKYKRMAPSALR 283 >C0CKL9.1 C0CKL9_9FIRM Putative uncharacterized protein Length = 291 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 103/253 (40%), Positives = 143/253 (56%) Query: 42 TFPHHWHEHLEFLFIESGEAVFECGRTPFSVRAGDLIAVNSNELHYGISASDDLLYYAII 101 FP HWHEHL+ + G A ECG+ F V+ GDL VN NELHY S SD+L++Y I Sbjct: 30 NFPRHWHEHLQIYYFIRGTAKLECGKNCFEVQEGDLAVVNCNELHYLESTSDNLVFYTIR 89 Query: 102 ADTALLHSAASDSAETKFIAPIRQNRLLFSNHVSGDQHISGCALTIIRELERREFGYELA 161 + A L+S D + K++API NR+ F N ++GD + ++ E ++ GYELA Sbjct: 90 VEPAFLYSNHEDLLQAKYLAPITLNRIEFHNFIAGDTELLEIVKKVLEEYYNKQIGYELA 149 Query: 162 VKAEXXXXXXXXXXXHGVTELSQAEQTRRIQTIERFAPVLRHIDTHYQEPIFVEGLAALA 221 VK H L+Q E R T+ RF PV I+++Y E I + LA Sbjct: 150 VKGGIYFLIVRLLRCHVQHILTQTELEEREHTLLRFKPVFEMIESNYCEKITLSQLAETI 209 Query: 222 GLSRFHFSRLFKELTGHTVSEYVNAVRLDRADYMLRHTQLTVSEIAAATGFNDIYYFSRT 281 G S HF R FK+LTG T ++Y+N +RLD+A Y L+ + ++EIA GF +I YFSR Sbjct: 210 GFSVHHFCRTFKQLTGKTTTDYMNHIRLDKAVYYLKQSDCNITEIALKCGFENINYFSRV 269 Query: 282 FKKHKQRTPSSVR 294 FKK+ +P+ R Sbjct: 270 FKKYYSVSPTQYR 282 >B2TLF6.1 B2TLF6_CLOBB AraC-type DNA-binding domain-containing protein Length = 289 Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 154/277 (55%), Gaps = 7/277 (2%) Query: 21 MPDPGFPIKVHTQRFDREGVVT---FPHHWHEHLEFLFIESGEAVFECGRTPFSVRAGDL 77 MP+P I + F EG F HWHE+++ F G+A+ EC + + V A + Sbjct: 12 MPNPNLGIDI----FLAEGFCKGRKFNTHWHENMQLYFFTEGKALVECNKKRYYVAADSI 67 Query: 78 IAVNSNELHYGISASDDLLYYAIIADTALLHSAASDSAETKFIAPIRQNRLLFSNHVSGD 137 + +NSNELH S SDDL +Y I D++ L S D +TKF++P+ QN++ F N + D Sbjct: 68 VVINSNELHSLESLSDDLKFYTIRIDSSFLFSNQVDLCQTKFLSPLSQNQIFFQNLIEDD 127 Query: 138 QHISGCALTIIRELERREFGYELAVKAEXXXXXXXXXXXHGVTELSQAEQTRRIQTIERF 197 + I C I+E +E GYELAVK+ + L++ E ++ ++RF Sbjct: 128 KQILDCVTITIQEYLSKEIGYELAVKSFIYQLIVLLLRKYISKFLTRKELILKVNNLKRF 187 Query: 198 APVLRHIDTHYQEPIFVEGLAALAGLSRFHFSRLFKELTGHTVSEYVNAVRLDRADYMLR 257 V ++ID++Y + I L+ + +S +HF R FK++TG T ++Y+N +RL++A L Sbjct: 188 DLVFKYIDSNYSKKITTSDLSDIVHISNYHFCRTFKQMTGKTTTDYINGIRLEKAVNYLN 247 Query: 258 HTQLTVSEIAAATGFNDIYYFSRTFKKHKQRTPSSVR 294 L ++EIA GF+ I YFSR FKKH +P+ + Sbjct: 248 KGDLNITEIALRCGFDSINYFSRLFKKHYNVSPTQFK 284 >B6FM02.1 B6FM02_9CLOT Putative uncharacterized protein Length = 294 Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 142/255 (55%) Query: 42 TFPHHWHEHLEFLFIESGEAVFECGRTPFSVRAGDLIAVNSNELHYGISASDDLLYYAII 101 FP HWHEHL+ + SG A ECG+ F V+A DL+ VN NELHY S SD+L++Y I Sbjct: 30 NFPRHWHEHLQVYYFISGTAKLECGKNNFEVQANDLVIVNPNELHYLESTSDNLVFYTIR 89 Query: 102 ADTALLHSAASDSAETKFIAPIRQNRLLFSNHVSGDQHISGCALTIIRELERREFGYELA 161 + + L S D +TK++ PI NR+ F+N + + ++ ++ E ++ GYELA Sbjct: 90 FEPSFLFSNHVDLLQTKYLTPITLNRIEFNNLIQNNTELTELVKKVLMEYFNKKIGYELA 149 Query: 162 VKAEXXXXXXXXXXXHGVTELSQAEQTRRIQTIERFAPVLRHIDTHYQEPIFVEGLAALA 221 +K H L+Q+E + T+ RF P I+ Y E I + LA Sbjct: 150 IKGYIYYLVVTLLRNHVQHILTQSELDDKEATLIRFQPAFELIEKKYNEKITLSKLANTV 209 Query: 222 GLSRFHFSRLFKELTGHTVSEYVNAVRLDRADYMLRHTQLTVSEIAAATGFNDIYYFSRT 281 GLS HF R FK+LTG T ++Y+N +RLD++ Y L+ T ++EIA GF + YFSR Sbjct: 210 GLSVHHFCRSFKQLTGKTTTDYINNIRLDKSIYYLKQTDYNITEIALMCGFENGNYFSRI 269 Query: 282 FKKHKQRTPSSVRGF 296 FKK+ +PS R Sbjct: 270 FKKYHSTSPSQYRNL 284 >A6LR84.1 A6LR84_CLOB8 Transcriptional regulator, AraC family Length = 285 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 153/273 (56%), Gaps = 1/273 (0%) Query: 20 DMPDPGFPIKVHTQRFDREGVVTFPHHWHEHLEFLFIESGEAVFECGRTPFSVRAGDLIA 79 DMPD F + + + G F HWHEHL+ + +G+ C F++ GD+I Sbjct: 11 DMPDRNFSVDIGLSKIWELGT-NFKEHWHEHLQVFYFINGKGFLRCNTKSFNIIQGDVII 69 Query: 80 VNSNELHYGISASDDLLYYAIIADTALLHSAASDSAETKFIAPIRQNRLLFSNHVSGDQH 139 +NS +LHY S ++DL +Y I D L S D +TK+++P+ +N +LF N + D Sbjct: 70 INSRDLHYLESLNNDLRFYLIRIDLPFLFSDQVDLCQTKYLSPLSENLILFKNLIRNDDE 129 Query: 140 ISGCALTIIRELERREFGYELAVKAEXXXXXXXXXXXHGVTELSQAEQTRRIQTIERFAP 199 I C TII+E ++E GYELAVKA + +++ + +I ERF Sbjct: 130 IVRCIKTIIKEYNKKEIGYELAVKANLYNLVVLLIRNYIDKFVTKRQLAFKINNDERFYK 189 Query: 200 VLRHIDTHYQEPIFVEGLAALAGLSRFHFSRLFKELTGHTVSEYVNAVRLDRADYMLRHT 259 V + +++ + I L+ +A +S ++F R+FK++TG T +EY+N VRL ++ +L+++ Sbjct: 190 VFEFVHSNFNKKISTLNLSNIAHVSPYYFCRIFKQITGKTTTEYINEVRLKKSIELLKNS 249 Query: 260 QLTVSEIAAATGFNDIYYFSRTFKKHKQRTPSS 292 + ++E+A GFND+ YFSR FKK +P+ Sbjct: 250 NMNITEVAINCGFNDVNYFSRLFKKKYGVSPTK 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,650,977,123 Number of extensions: 61856016 Number of successful extensions: 146331 Number of sequences better than 1.0e-05: 4719 Number of HSP's gapped: 146375 Number of HSP's successfully gapped: 4719 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)