BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0085.p (264 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9Y902.1 B9Y902_9FIRM Putative uncharacterized protein 263 1e-68 B0S3B1.1 B0S3B1_FINM2 Putative uncharacterized protein 256 2e-66 C4CA24.1 C4CA24_9ACTN Uncharacterized conserved protein 254 6e-66 C2HHS6.1 C2HHS6_PEPMA HTH DNA-binding protein 252 2e-65 B0P0M4.1 B0P0M4_9CLOT Putative uncharacterized protein 251 4e-65 >B9Y902.1 B9Y902_9FIRM Putative uncharacterized protein Length = 256 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 133/252 (52%), Positives = 174/252 (69%), Gaps = 3/252 (1%) Query: 3 YTINNLKDNSNVVIKEQLGGFTVIEYKEDLSTTTLAEAQSNFFMSKSNMRNKQLMIELNN 62 Y I N +DN +V +QLG FTVIEY DLS T A + ++ ++ N+R +Q++ +L Sbjct: 2 YQIKNFQDNDDVRTVDQLGPFTVIEYLRDLSVTP-GSAMTAYYCNEMNVRKRQVLCDLGR 60 Query: 63 SEVTLSAGAMQYMVGNIEMTSGVKGVGGLMRNIVSSAATGTSAIKPLYKGTGTILLETTY 122 +++T+ AGAMQ+MVG+++ T+GVKGVG L+ + ATG SAIKP Y G+GT++LE TY Sbjct: 61 ADITIQAGAMQWMVGDVKATTGVKGVGDLLGKAIRGKATGESAIKPEYTGSGTLVLEPTY 120 Query: 123 KYLWLXXXXX--XXXXXXXGLFLACESSLQLAVTARKSLSSAALGGEGLFNLSAKGKGIL 180 K+L L GLFLAC+S LQ R + SSA GGEGLFNLS G G+ Sbjct: 121 KHLILMDAAEWNGSVVLDDGLFLACDSRLQHKAVMRSNFSSAVAGGEGLFNLSLNGTGVF 180 Query: 181 ALEAPIPSEEAVVIELQNDVLKVDGNFALMWSNTLDFTVEKSGKTRLGSAASGEGLVNVY 240 +E+ P EE V I L++DVLKVDGNFA+ WSN+L FTVE+S K+ +GSAASGEGLVNVY Sbjct: 181 CIESDCPKEELVEITLKDDVLKVDGNFAIAWSNSLQFTVERSSKSLIGSAASGEGLVNVY 240 Query: 241 RGTGTVWLAPLT 252 RGTG V LAP+T Sbjct: 241 RGTGKVLLAPVT 252 >B0S3B1.1 B0S3B1_FINM2 Putative uncharacterized protein Length = 253 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/251 (50%), Positives = 172/251 (68%), Gaps = 3/251 (1%) Query: 3 YTINNLKDNSNVVIKEQLGGFTVIEYKEDLSTTTLAEAQSNFFMSKSNMRNKQLMIELNN 62 + + N +DN +V+IKEQ G F V+EYK DLS +AQS++F S+ N+R +QL+ +++ Sbjct: 2 FKVKNFEDNDDVIIKEQNGAFKVVEYKRDLSVD-YEQAQSSYFASEMNVRRRQLVCDVSQ 60 Query: 63 SEVTLSAGAMQYMVGNIEMTSGVKGVGGLMRNIVSSAATGTSAIKPLYKGTGTILLETTY 122 S +T+ AGAMQ+MVGN+ T+G+KG G + + + TG SAIKP Y G G ++LE TY Sbjct: 61 SNITVQAGAMQWMVGNVNSTTGIKGAGDFFKKALRGSVTGESAIKPEYTGDGLLVLEPTY 120 Query: 123 KYLWLXXXXX--XXXXXXXGLFLACESSLQLAVTARKSLSSAALGGEGLFNLSAKGKGIL 180 K++ L GLFLAC+S L+ + S+SSA GGEGLFNL G GI+ Sbjct: 121 KHIILLDADDWNNEIIIEDGLFLACDSELEHKAIMQSSISSAVAGGEGLFNLGLHGTGIV 180 Query: 181 ALEAPIPSEEAVVIELQNDVLKVDGNFALMWSNTLDFTVEKSGKTRLGSAASGEGLVNVY 240 ALE+ +P EE + I L NDVLK+DG+ A+ WS TL FTVE++GK+ +GSA SGEGLVNVY Sbjct: 181 ALESYVPREELIEITLDNDVLKIDGSMAIAWSGTLSFTVERAGKSLIGSATSGEGLVNVY 240 Query: 241 RGTGTVWLAPL 251 RGTG V +AP+ Sbjct: 241 RGTGKVLMAPV 251 >C4CA24.1 C4CA24_9ACTN Uncharacterized conserved protein Length = 253 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 131/250 (52%), Positives = 170/250 (68%), Gaps = 3/250 (1%) Query: 3 YTINNLKDNSNVVIKEQLGGFTVIEYKEDLSTTTLAEAQSNFFMSKSNMRNKQLMIELNN 62 YTI N N +V + Q+G F+VIE+K DLS T Q+ +F S+ N+R +Q++++L Sbjct: 2 YTIKNFLQNDDVTVLSQMGAFSVIEWKRDLSLTP-ETVQNAWFCSEMNVRRRQVVVDLKQ 60 Query: 63 SEVTLSAGAMQYMVGNIEMTSGVKGVGGLMRNIVSSAATGTSAIKPLYKGTGTILLETTY 122 + VT+ AGAMQ+MVG++ +GVKG G + + A T SAIKP YKGTGT++LE TY Sbjct: 61 APVTIQAGAMQWMVGDVYNDTGVKGAGDFLGKALRGAVTNESAIKPEYKGTGTLVLEPTY 120 Query: 123 KYLWLXXXXX--XXXXXXXGLFLACESSLQLAVTARKSLSSAALGGEGLFNLSAKGKGIL 180 KY+ L GLFLAC SSL+ R ++SSAA GGEGLFNL+ +G G L Sbjct: 121 KYIILLDVAQWGNNIVLDDGLFLACYSSLKHTAVMRSNISSAAAGGEGLFNLAIQGFGAL 180 Query: 181 ALEAPIPSEEAVVIELQNDVLKVDGNFALMWSNTLDFTVEKSGKTRLGSAASGEGLVNVY 240 LE+P P EE + IEL +DVLK+DGN AL WS +L FTVE+S K+ +GSAASGEGLVNVY Sbjct: 181 CLESPCPQEELIEIELNDDVLKIDGNMALAWSGSLQFTVERSSKSLIGSAASGEGLVNVY 240 Query: 241 RGTGTVWLAP 250 RGTG V +AP Sbjct: 241 RGTGKVLMAP 250 >C2HHS6.1 C2HHS6_PEPMA HTH DNA-binding protein Length = 253 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/251 (49%), Positives = 171/251 (68%), Gaps = 3/251 (1%) Query: 3 YTINNLKDNSNVVIKEQLGGFTVIEYKEDLSTTTLAEAQSNFFMSKSNMRNKQLMIELNN 62 + + N +DN +V+IKEQ G F VIEYK DLS +AQS++F S+ N+R +QL+ +++ Sbjct: 2 FKVKNFEDNDDVIIKEQNGAFKVIEYKRDLSVD-YEQAQSSYFASEMNVRRRQLLCDVSK 60 Query: 63 SEVTLSAGAMQYMVGNIEMTSGVKGVGGLMRNIVSSAATGTSAIKPLYKGTGTILLETTY 122 S +T+ AGAMQ+M+GN+ T+G+KG G + + + TG AIKP Y G G ++LE TY Sbjct: 61 SNITVQAGAMQWMLGNVSSTTGIKGAGDFFKKALRGSVTGEGAIKPEYTGDGLLVLEPTY 120 Query: 123 KYLWLXXXXX--XXXXXXXGLFLACESSLQLAVTARKSLSSAALGGEGLFNLSAKGKGIL 180 K++ L GLFLAC+S L+ + ++SSA GGEGLFNL G GI+ Sbjct: 121 KHIILLDADDWNNEIIIEDGLFLACDSELEHKAIMQSNISSAVAGGEGLFNLGLHGTGIV 180 Query: 181 ALEAPIPSEEAVVIELQNDVLKVDGNFALMWSNTLDFTVEKSGKTRLGSAASGEGLVNVY 240 ALE+ +P EE + I L NDVLK+DGN A+ WS +L FTVE++GK+ +GSA SGEGLVNVY Sbjct: 181 ALESYVPREELIEITLDNDVLKIDGNMAIAWSGSLSFTVERAGKSLIGSATSGEGLVNVY 240 Query: 241 RGTGTVWLAPL 251 RGTG V +AP+ Sbjct: 241 RGTGKVLMAPV 251 >B0P0M4.1 B0P0M4_9CLOT Putative uncharacterized protein Length = 696 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 126/253 (49%), Positives = 167/253 (66%), Gaps = 3/253 (1%) Query: 1 MAYTINNLKDNSNVVIKEQLGGFTVIEYKEDLSTTTLAEAQSNFFMSKSNMRNKQLMIEL 60 + Y I+N DN +V I ++ G F VIEY+ DLS +AQ FF S+ N+R +QL EL Sbjct: 422 IMYKISNFSDNDDVKIIDKSGPFEVIEYQRDLSVMP-EDAQLAFFCSQMNVRKRQLKCEL 480 Query: 61 NNSEVTLSAGAMQYMVGNIEMTSGVKGVGGLMRNIVSSAATGTSAIKPLYKGTGTILLET 120 + VT+ +GAMQ+M G++ T+G+KG G + + TG S IKP Y G GT++LE Sbjct: 481 SRGNVTIQSGAMQWMAGDVSATTGIKGAGDFLSKTIRGKVTGESVIKPEYTGDGTLVLEP 540 Query: 121 TYKYLWLXXXXX--XXXXXXXGLFLACESSLQLAVTARKSLSSAALGGEGLFNLSAKGKG 178 TYK++ L GLFLACES+L+ RK+ SSA GGEG FNL KG G Sbjct: 541 TYKHIILLDLDEWGNSIVLDDGLFLACESTLKQKAVRRKTFSSAFAGGEGFFNLGLKGSG 600 Query: 179 ILALEAPIPSEEAVVIELQNDVLKVDGNFALMWSNTLDFTVEKSGKTRLGSAASGEGLVN 238 ++ +E+ P EE V I L++DV+K+DGN A+ WS +LDFTVE++GK+ LGSAASGEGLVN Sbjct: 601 VVCIESDCPREELVEITLEDDVVKIDGNLAVAWSGSLDFTVERAGKSLLGSAASGEGLVN 660 Query: 239 VYRGTGTVWLAPL 251 VYRGTG V LAP+ Sbjct: 661 VYRGTGKVLLAPV 673 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.129 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,350,734,765 Number of extensions: 50499582 Number of successful extensions: 110392 Number of sequences better than 1.0e-05: 89 Number of HSP's gapped: 110378 Number of HSP's successfully gapped: 89 Length of query: 264 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 131 Effective length of database: 1,807,701,208 Effective search space: 236808858248 Effective search space used: 236808858248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)