BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0079.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65MD7.1 Q65MD7_BACLD Transcriptional antiterminator 269 2e-70 P15401.1 SACY_BACSU Levansucrase and sucrase synthesis operon an... 259 2e-67 B7GMN7.1 B7GMN7_ANOFW Transcriptional antiterminator of sucrose ... 243 1e-62 Q5KUA6.1 Q5KUA6_GEOKA Transcription antiterminator 232 3e-59 C3IZD1.1 C3IZD1_9BACI Transcriptional antiterminator, BglG 232 3e-59 >Q65MD7.1 Q65MD7_BACLD Transcriptional antiterminator Length = 280 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 130/278 (46%), Positives = 189/278 (67%) Query: 1 MKIKKILNNNAVVVNDLGEEKIVMGSGIAFQKRKNDIIDPSLVEKVFIMDDPDQYGHLQE 60 MK+KKILNNNA+VV D GEEKIV+GSGIAFQK+KNDI+D S +EK+F+M D +Y +E Sbjct: 1 MKVKKILNNNALVVKDRGEEKIVLGSGIAFQKKKNDIVDRSKIEKIFVMKDSSEYRQFEE 60 Query: 61 MLGTLPEEEIAASEQIITYAEHELEVTFNEHIHIALTDHLSFALERIRKGTMIQNTLLDE 120 +L TLPE+ I +E II+YAE EL + NE IH+A +DHLSFA+ER+ KG +I+N LL E Sbjct: 61 ILKTLPEDHIQVAEDIISYAEKELGIKINERIHVAFSDHLSFAIERLSKGMVIKNPLLQE 120 Query: 121 IRILYPREFQIGLHAKSIIREALQVDIPVDEVGYIAMHIHTAWKNAGVRGSAAETAAMIR 180 +++LY +EFQIG AK++I+E L++DIP DEV IA+HIHTA NAG + MI+ Sbjct: 121 VKVLYTKEFQIGRWAKALIKEKLKIDIPEDEVANIALHIHTAKTNAGDMTKTLDLTTMIK 180 Query: 181 DLAEGVEQAAGITLERGSANYERLVTQLENILRTDENGKLLSELNPEIVRIAKERYTLAY 240 D+ E +E I ++ + +YERLV L ++ E+G+ E++ E++ + K+++ A+ Sbjct: 181 DIIEIIENKLNIKIKDETISYERLVNHLRFAIQHIESGETFYEMDGEMISLIKKKFGQAF 240 Query: 241 VQATEISRLVEEDYSYVLSDSQRVCLAMEINRINTRSG 278 + A EI V+ +Y + + + + M I R RS Sbjct: 241 MCAEEIGAFVKREYGFEFPEKELCYITMHIQRFYQRSA 278 >P15401.1 SACY_BACSU Levansucrase and sucrase synthesis operon antiterminator Length = 280 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 131/277 (47%), Positives = 188/277 (67%) Query: 1 MKIKKILNNNAVVVNDLGEEKIVMGSGIAFQKRKNDIIDPSLVEKVFIMDDPDQYGHLQE 60 MKIK+ILN+NA+VV D EEKI++G+GIAF K+KNDI+DPS +EK FI D Y +E Sbjct: 1 MKIKRILNHNAIVVKDQNEEKILLGAGIAFNKKKNDIVDPSKIEKTFIRKDTPDYKQFEE 60 Query: 61 MLGTLPEEEIAASEQIITYAEHELEVTFNEHIHIALTDHLSFALERIRKGTMIQNTLLDE 120 +L TLPE+ I SEQII++AE EL + NE IH+A +DHLSFA+ER+ G +I+N LL+E Sbjct: 61 ILETLPEDHIQISEQIISHAEKELNIKINERIHVAFSDHLSFAIERLSNGMVIKNPLLNE 120 Query: 121 IRILYPREFQIGLHAKSIIREALQVDIPVDEVGYIAMHIHTAWKNAGVRGSAAETAAMIR 180 I++LYP+EFQIGL A+++I++ L + IP DE+G IAMHIHTA NAG + MIR Sbjct: 121 IKVLYPKEFQIGLWARALIKDKLGIHIPDDEIGNIAMHIHTARNNAGDMTQTLDITTMIR 180 Query: 181 DLAEGVEQAAGITLERGSANYERLVTQLENILRTDENGKLLSELNPEIVRIAKERYTLAY 240 D+ E +E I + + +YERLVT L ++ + G+ + EL+ E++ I KE++ A+ Sbjct: 181 DIIEIIEIQLSINIVEDTISYERLVTHLRFAIQHIKAGESIYELDAEMIDIIKEKFKDAF 240 Query: 241 VQATEISRLVEEDYSYVLSDSQRVCLAMEINRINTRS 277 + A I V+++Y + + + +AM I R RS Sbjct: 241 LCALSIGTFVKKEYGFEFPEKELCYIAMHIQRFYQRS 277 >B7GMN7.1 B7GMN7_ANOFW Transcriptional antiterminator of sucrose metabolism Length = 276 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 123/276 (44%), Positives = 186/276 (67%), Gaps = 2/276 (0%) Query: 1 MKIKKILNNNAVVVNDLGEEKIVMGSGIAFQKRKNDIIDPSLVEKVFIMDDPDQYGHLQE 60 ++I KILNNNAVVV D G+EKIVMG GIAFQK+KNDI+ + +EK+F+M++ ++ QE Sbjct: 3 LRIHKILNNNAVVVLDEGQEKIVMGPGIAFQKKKNDIVPRAKIEKIFVMEEENE--KFQE 60 Query: 61 MLGTLPEEEIAASEQIITYAEHELEVTFNEHIHIALTDHLSFALERIRKGTMIQNTLLDE 120 +L TLPEE I +E+II+YAE EL+ N HIHIALTDHLSFA+ERI++G IQN LL+E Sbjct: 61 LLRTLPEEHIDIAEEIISYAEGELQAPLNNHIHIALTDHLSFAIERIQQGYQIQNKLLNE 120 Query: 121 IRILYPREFQIGLHAKSIIREALQVDIPVDEVGYIAMHIHTAWKNAGVRGSAAETAAMIR 180 I++LY +E+QIGL AK +IRE L +DIP DEV +IA+HIHTA +A + +IR Sbjct: 121 IKVLYKKEYQIGLWAKQLIRERLGIDIPDDEVAHIALHIHTAKMDAASMNRTLKQTTLIR 180 Query: 181 DLAEGVEQAAGITLERGSANYERLVTQLENILRTDENGKLLSELNPEIVRIAKERYTLAY 240 ++ + ++Q + ++ +Y+RLVT L L ENG+L ++ E++ + + +Y + Sbjct: 181 EMIDLMKQVLHVHIDEEGISYQRLVTHLRFALNRIENGELFHSMDEEMLTLIQTKYEREF 240 Query: 241 VQATEISRLVEEDYSYVLSDSQRVCLAMEINRINTR 276 A ++ +++Y ++ + + I R+ T+ Sbjct: 241 ACAVAMAEYAKKEYGIQFPVTELAYITLHIQRLTTK 276 >Q5KUA6.1 Q5KUA6_GEOKA Transcription antiterminator Length = 276 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/276 (42%), Positives = 182/276 (65%), Gaps = 2/276 (0%) Query: 1 MKIKKILNNNAVVVNDLGEEKIVMGSGIAFQKRKNDIIDPSLVEKVFIMDDPDQYGHLQE 60 +I KILNNNAVVV D G+EKIVMG GIAFQKRKND+I P +EK+F+M++ ++ Q+ Sbjct: 3 FRIHKILNNNAVVVLDEGKEKIVMGPGIAFQKRKNDLIPPGRIEKIFVMEEENE--KFQQ 60 Query: 61 MLGTLPEEEIAASEQIITYAEHELEVTFNEHIHIALTDHLSFALERIRKGTMIQNTLLDE 120 +L TLPEE I +E+II+YAE +L+ ++HIHIALTDHLSFA+ER+++G IQN LL+E Sbjct: 61 LLRTLPEEHIDIAEEIISYAEGKLQAPLSDHIHIALTDHLSFAIERLKQGYRIQNKLLNE 120 Query: 121 IRILYPREFQIGLHAKSIIREALQVDIPVDEVGYIAMHIHTAWKNAGVRGSAAETAAMIR 180 I++LY E++IGL AK +I+E L ++IP DE +IA+HIHTA +A +I Sbjct: 121 IKVLYKAEYEIGLWAKQLIKERLGIEIPDDEAAHIALHIHTAKLDAASMNKTMRETTLIH 180 Query: 181 DLAEGVEQAAGITLERGSANYERLVTQLENILRTDENGKLLSELNPEIVRIAKERYTLAY 240 +L + ++ GI +++ S +Y+RL+T L L ENG+ + ++ E++ + + +Y + Sbjct: 181 ELVDLIQTELGILIDKESISYQRLLTHLRFALSRIENGEPIHSMDEEMLALIQTKYAKEW 240 Query: 241 VQATEISRLVEEDYSYVLSDSQRVCLAMEINRINTR 276 + + E++Y + + + + I R+ R Sbjct: 241 ACTQKAATYAEKEYGIRFPEEELAYIVLHIQRLRKR 276 >C3IZD1.1 C3IZD1_9BACI Transcriptional antiterminator, BglG Length = 276 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/276 (42%), Positives = 182/276 (65%), Gaps = 2/276 (0%) Query: 1 MKIKKILNNNAVVVNDLGEEKIVMGSGIAFQKRKNDIIDPSLVEKVFIMDDPDQYGHLQE 60 +I KILNNNAVVV D G+EKIVMG GIAFQKRKND+I P +EK+F+M++ ++ Q+ Sbjct: 3 FRIHKILNNNAVVVLDEGKEKIVMGPGIAFQKRKNDLIPPGRIEKIFVMEEENE--KFQQ 60 Query: 61 MLGTLPEEEIAASEQIITYAEHELEVTFNEHIHIALTDHLSFALERIRKGTMIQNTLLDE 120 +L TLPEE I +E+II+YAE +L+ ++HIHIALTDHLSFA+ER+++G IQN LL+E Sbjct: 61 LLRTLPEEHIDIAEEIISYAEGKLQAPLSDHIHIALTDHLSFAIERLKQGYRIQNKLLNE 120 Query: 121 IRILYPREFQIGLHAKSIIREALQVDIPVDEVGYIAMHIHTAWKNAGVRGSAAETAAMIR 180 I++LY E++IGL AK +I+E L ++IP DE +IA+HIHTA +A +I Sbjct: 121 IKVLYKAEYEIGLWAKQLIKERLGIEIPDDEAAHIALHIHTAKLDAASMNKTMRETTLIH 180 Query: 181 DLAEGVEQAAGITLERGSANYERLVTQLENILRTDENGKLLSELNPEIVRIAKERYTLAY 240 +L + ++ GI +++ S +Y+RL+T L L ENG+ + ++ E++ + + +Y + Sbjct: 181 ELVDLIQTELGILIDKESISYQRLLTHLRFALSRIENGEPIHSMDEEMLALIQTKYAREW 240 Query: 241 VQATEISRLVEEDYSYVLSDSQRVCLAMEINRINTR 276 + + E++Y + + + + I R+ R Sbjct: 241 ACTQKAATYAEKEYGIRFPEEELAYIVLHIQRLRKR 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,562,607,848 Number of extensions: 63091667 Number of successful extensions: 200341 Number of sequences better than 1.0e-05: 877 Number of HSP's gapped: 198954 Number of HSP's successfully gapped: 886 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)