BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0070.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1KWB6.1 B1KWB6_CLOBM Peptidase, M56 family protein 185 5e-45 B1Q6D1.1 B1Q6D1_CLOBO Putative beta-lactamase regulatory protein... 183 1e-44 B1IDT6.1 B1IDT6_CLOBK Peptidase, M56 family 179 3e-43 A6LS24.1 A6LS24_CLOB8 Peptidase M56, BlaR1 172 3e-41 C0ZHU2.1 C0ZHU2_BREBN Hypothetical membrane protein 163 2e-38 >B1KWB6.1 B1KWB6_CLOBM Peptidase, M56 family protein Length = 737 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 121/190 (63%), Gaps = 1/190 (0%) Query: 75 FRKRVGNSRKPVTQEVLPILEACTKKLNLHQTVPIYETSSLRSPCLHGLLRPAIYLPEDI 134 F+ R+ N + E++ +LE C KKL++++++PIY ++PC+ G+L+P IY+P+ Sbjct: 159 FKVRISNLEQIRGPEIVSLLEECKKKLSINRSIPIYACDDFKAPCIFGVLKPKIYIPKYK 218 Query: 135 AVIADSNQLTHILMHELTHYKRKDLWFNFLWTLSIGLHWYNPFVWLAVRRMKADQEVACD 194 D L+HI +HEL HYKRKDL +NFL T++I +HW+NP +W V+RMK +E ACD Sbjct: 219 YSTNDYKYLSHIFLHELIHYKRKDLIYNFLGTITILIHWFNPIIWFIVKRMKLQREYACD 278 Query: 195 AGVLEVLGARESSSYGMTLLMLSRLFSQKPVPGVNLTHFWEHKNETKRRVMMITRFKRGS 254 VLE+LG ES YGMTL+ S+L S L F+E KN+ KRR+ MI FK+GS Sbjct: 279 TYVLEILGKEESIEYGMTLINFSKLISSSE-KAPQLVIFFETKNQIKRRIKMIKNFKKGS 337 Query: 255 YIGCRAPQHC 264 Y A C Sbjct: 338 YRMSAAAVIC 347 >B1Q6D1.1 B1Q6D1_CLOBO Putative beta-lactamase regulatory protein 1; methicillin resistance protein Length = 732 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 122/182 (67%), Gaps = 3/182 (1%) Query: 75 FRKRVGNSRKPVTQEVLPILEACTKKLNLHQTVPIYETSSLRSPCLHGLLRPAIYLPEDI 134 F+ ++ N + E++ +LE C KKL++++++PIY ++PC+ G+L+P IY+P+ Sbjct: 159 FKVKISNLEQIEDLEIVSLLEECKKKLSINRSIPIYACDDFKAPCIFGVLKPKIYIPKYK 218 Query: 135 AVIADSNQLTHILMHELTHYKRKDLWFNFLWTLSIGLHWYNPFVWLAVRRMKADQEVACD 194 D L+HI +HEL HYKRKDL +NFL T++I ++W+NP +W V++MK +E ACD Sbjct: 219 YSTNDYKYLSHIFLHELIHYKRKDLIYNFLGTITILIYWFNPIIWFIVKKMKLQREYACD 278 Query: 195 AGVLEVLGARESSSYGMTLLMLSRLF-SQKPVPGVNLTHFWEHKNETKRRVMMITRFKRG 253 VLE+LG ES YGMTL+ S+L S K VP L F+E KN+ KRR+ MI FK+G Sbjct: 279 TYVLEILGKEESIEYGMTLINFSKLISSSKKVP--QLAIFFETKNQIKRRIKMIKNFKKG 336 Query: 254 SY 255 SY Sbjct: 337 SY 338 >B1IDT6.1 B1IDT6_CLOBK Peptidase, M56 family Length = 732 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 80/168 (47%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 89 EVLPILEACTKKLNLHQTVPIYETSSLRSPCLHGLLRPAIYLPEDIAVIADSNQLTHILM 148 +++ +LE C KKL++++ +PIY ++PC+ G+L+P IY+P+ D L+HI + Sbjct: 173 KIVSLLEECKKKLSINRNIPIYACDDFKTPCIFGVLKPKIYIPKYKYSTNDYKYLSHIFL 232 Query: 149 HELTHYKRKDLWFNFLWTLSIGLHWYNPFVWLAVRRMKADQEVACDAGVLEVLGARESSS 208 HEL HYKRKDL +NFL T++I +HW+NP +W V++MK +E ACD VLE+LG ES Sbjct: 233 HELIHYKRKDLIYNFLGTIAILIHWFNPMIWFIVKKMKLQREYACDTYVLEILGKEESIE 292 Query: 209 YGMTLLMLSRLF-SQKPVPGVNLTHFWEHKNETKRRVMMITRFKRGSY 255 YGMTL+ S+L S + VP L F+E KN+ KRR+ MI FK+GSY Sbjct: 293 YGMTLINFSKLISSSRKVP--QLAIFFETKNQIKRRIKMIKNFKKGSY 338 >A6LS24.1 A6LS24_CLOB8 Peptidase M56, BlaR1 Length = 738 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 25/257 (9%) Query: 21 FPHAVPAPAIVQPSLADQIYEEK------------EAGQHWITIGALVWXXXXXXXXXXX 68 F VP + S+ + IY EK + I + +W Sbjct: 90 FDSEVP-----KKSIENNIYNEKTQIETEDKTQSTNKQNSILKIISCIWIIGVLIIDLIL 144 Query: 69 XWSVLVFRKRVGNSRKPVTQEVLPILEACTKKLNLHQTVPIYETSSLRSPCLHGLLRPAI 128 S+L+F+++ + + E+ ++E C K N+ + Y L SPC+ G+ +P I Sbjct: 145 FLSMLIFKRKTKHLETDMYPEIQSVIELCKDKANVSSNISFYVCDDLNSPCILGITKPKI 204 Query: 129 YLPEDIAVIADSNQLTHILMHELTHYKRKDLWFNFLWTLSIGLHWYNPFVWLAVRRMKAD 188 YLP+ I I D+N L+HI +HEL HYKRKDL NFL T+ +HW+NP VW + ++K Sbjct: 205 YLPKHILNINDNNLLSHIFLHELFHYKRKDLLCNFLSTIIFSIHWFNPIVWFLLNKIKLY 264 Query: 189 QEVACDAGVLEVLGARESSSYGMTLLMLSRLFSQKPVPGVNLTHFWEHKNETKRRVMMIT 248 +E ACDA VLE+LG +E+ YGM+L+ LS++F K NL F+E N+ K R+ MI Sbjct: 265 REYACDACVLELLGEKEAIKYGMSLINLSKMFLNK-TNHSNLAIFFETNNQMKGRIEMIK 323 Query: 249 RFKRGSY-------IGC 258 +FK GSY +GC Sbjct: 324 KFKTGSYRISIIGVLGC 340 >C0ZHU2.1 C0ZHU2_BREBN Hypothetical membrane protein Length = 746 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 47/301 (15%) Query: 1 VLIKLLVPVAPQSPVSLFNLF------------PHA-----------------VPAP--- 28 VLI+LL P P S VS+FN++ PH+ + +P Sbjct: 46 VLIRLLFPFLPNSSVSIFNIWQLGVDSIKNAVSPHSPVANDASQKEREQNSKQINSPQND 105 Query: 29 --------AIVQPSLADQIYEEKEAGQHWITIG----ALVWXXXXXXXXXXXXWSVLVFR 76 ++ PS+++ I + + + T+G A+VW +L R Sbjct: 106 KTKQPENQKLLDPSISNPIKIDPDPVEDTHTLGVKIAAIVWLIGCISLLGFMCAYLLRTR 165 Query: 77 KRVGNSRKPVTQEVLPILEACTKKLNLHQTVPIYETSSLRSPCLHGLLRPAIYLPEDIAV 136 +R+ + + +V+ I++ C K+ + + +PIY S +SP + GL+ P IY PE+I Sbjct: 166 RRMSSLKIVTDPQVISIMDDCRKRFGITKPIPIYSGSYRKSPHIAGLIHPWIYCPEEICK 225 Query: 137 IADSNQLTHILMHELTHYKRKDLWFNFLWTLSIGLHWYNPFVWLAVRRMKADQEVACDAG 196 ++++ LTH+ HEL HYKRKD+ +N L L++ +HW NPF+W+ V++MKAD+E+ACDA Sbjct: 226 ESNASALTHVFSHELAHYKRKDIAWNLLGLLALAIHWMNPFIWMCVKQMKADRELACDAY 285 Query: 197 VLEVLGARESSSYGMTLLMLSRLFSQKPVPGVNLTHFWE--HKNETKRRVMMITRFKRGS 254 VL VLG ES YGMT++ + FS ++L F E ++N+ RR+ MI FK GS Sbjct: 286 VLNVLGEAESVPYGMTIIQFLQRFSTNR-QQLHLLPFTEANNRNQMIRRIQMIKSFKTGS 344 Query: 255 Y 255 Y Sbjct: 345 Y 345 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.138 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,664,531,106 Number of extensions: 64161717 Number of successful extensions: 162140 Number of sequences better than 1.0e-05: 350 Number of HSP's gapped: 162020 Number of HSP's successfully gapped: 350 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)