BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0065.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B399.1 C3B399_BACMY Putative uncharacterized protein 203 1e-50 C3AL42.1 C3AL42_BACMY Putative uncharacterized protein 203 1e-50 C3BJY6.1 C3BJY6_9BACI Putative uncharacterized protein 202 4e-50 Q65M36.1 Q65M36_BACLD YhcI 128 8e-28 P54593.1 YHCI_BACSU Uncharacterized protein yhcI 112 4e-23 >C3B399.1 C3B399_BACMY Putative uncharacterized protein Length = 301 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 1/302 (0%) Query: 12 MKIYKRKRTWXXXXXXXXXXXXXXXNVRXXXXXXXXXXWRSQLEQENHRLAAEAAEPDAL 71 MKI+KRKRTW NV+ W++ L +EN L E E L Sbjct: 1 MKIFKRKRTWIMVGVMVIFIFIQFLNVKLSSQVNYGDDWKTSLIEENALLQVEK-ESLKL 59 Query: 72 QIEIRQAEKNILLNEYALQHNLPPETNAWSFAGDLSGNXXXXXXXXXXXXXXXXXXXXXX 131 IE + EK +LLN Y + N+ P NAW F S N Sbjct: 60 PIEKIENEKKLLLNNYYIDSNIKPTNNAWFFTIGQSTNFLIAISILTLIIAGEIVASEFQ 119 Query: 132 XDTIKLLLTRSASRTEVYTAKYIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSYMYV 191 TIK LLTR+A+RT++Y +KYI+ Y++V Sbjct: 120 SGTIKFLLTRTATRTQIYFSKYISTLLFGFFLIVMTFLLSILFSGILLGFDGINGEYLFV 179 Query: 192 KDHTVHQTPMLLSILGSYLSHLPFLLIAVTLAFMISAGFRSSIFAIVIPLFVSVAGFVMA 251 KDH V +T L +++GS L +P+L+I VTLAFMISA F+S+ F+IV L V++AGFVM+ Sbjct: 180 KDHAVQKTSFLQALIGSLLFKIPYLIIVVTLAFMISAAFKSTTFSIVFSLLVAIAGFVMS 239 Query: 252 IAMNGWPWTRFFIFSHTDLSGYFLGDPAVKGMTLGFSLAFIGVHLAAMHLLSHTLFVKRD 311 I++ G+ WT++FIFSHTDLS + +P V+GMT FS+ FI +H+ MH +++ +FVK+D Sbjct: 240 ISLKGFSWTKYFIFSHTDLSSFVYENPPVEGMTFSFSILFILIHIFIMHGIAYPIFVKKD 299 Query: 312 VS 313 V+ Sbjct: 300 VA 301 >C3AL42.1 C3AL42_BACMY Putative uncharacterized protein Length = 301 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 1/302 (0%) Query: 12 MKIYKRKRTWXXXXXXXXXXXXXXXNVRXXXXXXXXXXWRSQLEQENHRLAAEAAEPDAL 71 MKI+KRKRTW NV+ W++ L +EN L E E L Sbjct: 1 MKIFKRKRTWIMVGVMVIFIFIQFLNVKLSSQVNYGDDWKTSLIEENALLQVEK-ESLKL 59 Query: 72 QIEIRQAEKNILLNEYALQHNLPPETNAWSFAGDLSGNXXXXXXXXXXXXXXXXXXXXXX 131 IE + EK +LLN Y + N+ P NAW F S N Sbjct: 60 PIEKIENEKKLLLNNYYIDSNIKPTNNAWFFTIGQSTNFLIAISILTLIIAGEIVASEFQ 119 Query: 132 XDTIKLLLTRSASRTEVYTAKYIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSYMYV 191 TIK LLTR+A+RT++Y +KYI+ Y++V Sbjct: 120 SGTIKFLLTRTATRTQIYFSKYISTLLFGFFLIVMTFLLSILFSGILLGFDGINGEYLFV 179 Query: 192 KDHTVHQTPMLLSILGSYLSHLPFLLIAVTLAFMISAGFRSSIFAIVIPLFVSVAGFVMA 251 KDH V +T L +++GS L +P+L+I VTLAFMISA F+S+ F+IV L V++AGFVM+ Sbjct: 180 KDHAVQKTSFLQALIGSLLFKIPYLIIVVTLAFMISAAFKSTTFSIVFSLLVAIAGFVMS 239 Query: 252 IAMNGWPWTRFFIFSHTDLSGYFLGDPAVKGMTLGFSLAFIGVHLAAMHLLSHTLFVKRD 311 I++ G+ WT++FIFSHTDLS + +P V+GMT FS+ FI +H+ MH +++ +FVK+D Sbjct: 240 ISLKGFSWTKYFIFSHTDLSSFVYENPPVEGMTFSFSILFILIHIFIMHGIAYPIFVKKD 299 Query: 312 VS 313 V+ Sbjct: 300 VA 301 >C3BJY6.1 C3BJY6_9BACI Putative uncharacterized protein Length = 301 Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 1/302 (0%) Query: 12 MKIYKRKRTWXXXXXXXXXXXXXXXNVRXXXXXXXXXXWRSQLEQENHRLAAEAAEPDAL 71 MKI+KRKRTW NV+ W++ L +EN L E E L Sbjct: 1 MKIFKRKRTWIMVGVMVVFIFIQFLNVKLSSQVNYGDDWKTSLIEENALLQVEK-ESLKL 59 Query: 72 QIEIRQAEKNILLNEYALQHNLPPETNAWSFAGDLSGNXXXXXXXXXXXXXXXXXXXXXX 131 IE + EK +LLN Y + N+ P NAW F S N Sbjct: 60 PIEKIENEKKLLLNNYYIDSNIKPTNNAWFFTIGQSTNFLIAISILTLIIAGEIVASEFQ 119 Query: 132 XDTIKLLLTRSASRTEVYTAKYIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSYMYV 191 TIK LLTR+A+RT++Y +KYI+ Y++V Sbjct: 120 SGTIKFLLTRTATRTQIYFSKYISTLLFGFFLIVMTFLLSILFSGILLGFDGINGEYLFV 179 Query: 192 KDHTVHQTPMLLSILGSYLSHLPFLLIAVTLAFMISAGFRSSIFAIVIPLFVSVAGFVMA 251 KDH V +T L +++GS L +P+L+I TLAFMISA F+S+ F+IV L V++AGFVM+ Sbjct: 180 KDHAVQKTSFLQALIGSLLFKIPYLIIVATLAFMISAAFKSTTFSIVFSLLVAIAGFVMS 239 Query: 252 IAMNGWPWTRFFIFSHTDLSGYFLGDPAVKGMTLGFSLAFIGVHLAAMHLLSHTLFVKRD 311 I++ G+ WT++FIFSHTDLS + +P V+GMT FS+ FI +H+ MH +++ +FVK+D Sbjct: 240 ISLKGFSWTKYFIFSHTDLSSFVYENPPVEGMTFSFSILFILIHIFIMHGIAYPIFVKKD 299 Query: 312 VS 313 V+ Sbjct: 300 VA 301 >Q65M36.1 Q65M36_BACLD YhcI Length = 313 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 5/314 (1%) Query: 3 LINYILNENMKIYKRKRTWXXXXXXXXXXXXXXXNVRXXXXXXXXXXWRSQLEQENHRLA 62 + N I+NE +KI+ RK T+ + W+ +L QEN + Sbjct: 1 MFNLIVNEWIKIFNRKGTYVMIGILLLAVIGLGVLTKTIGETDQNTDWKKELAQENKDMK 60 Query: 63 AEAAEPDALQIEIRQAEKNILLNEYALQHNLPPETN--AWSFAGDLSGNXXXXXXXXXXX 120 + +E + E++I +NEY ++H+LP + + A SF D SG Sbjct: 61 EQLKGNSNPTLE-KNYEQSIAINEYRIKHDLPADGDYSALSFISDTSG-LISLAGLFVIT 118 Query: 121 XXXXXXXXXXXXDTIKLLLTRSASRTEVYTAKYIAAXXXXXXXXXXXXXXXXXXXXXXXX 180 T+KLL+ R SR ++ AKY Sbjct: 119 VAAGIVANEFSWGTVKLLVIRPISRFKILLAKYFTVLLFALALLFILFASAGITGLALFG 178 Query: 181 XXXXXDSYMYVKDHTVHQTPMLLSILGSYLSHLPFLLIAVTLAFMISAGFRSSIFAIVIP 240 ++ TV + +LL + GSYL + LL+ T+AFMISA FR+S A+ I Sbjct: 179 AGDSSQVHLVYVGGTVEEKSLLLHLAGSYLLNSISLLMMATMAFMISAVFRNSSLAVGIS 238 Query: 241 LFVSV-AGFVMAIAMNGWPWTRFFIFSHTDLSGYFLGDPAVKGMTLGFSLAFIGVHLAAM 299 +F+ V G V + + W ++ +F++TDL+ YF G P V MTLGFS+ + V+ Sbjct: 239 IFLLVMGGTVTGLLATKFAWAKYILFANTDLTQYFDGSPVVSDMTLGFSIVMLAVYFIVF 298 Query: 300 HLLSHTLFVKRDVS 313 H+L+ +F KRD++ Sbjct: 299 HVLAFVVFTKRDIA 312 >P54593.1 YHCI_BACSU Uncharacterized protein yhcI Length = 313 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/316 (26%), Positives = 136/316 (43%), Gaps = 9/316 (2%) Query: 3 LINYILNENMKIYKRKRTWXXXXXXXXXXXXXXXNVRXXXXXXXXXXWRSQLEQENHRLA 62 ++N I NE +KI+ R TW W+ +L+ +N L Sbjct: 1 MLNLIYNEWLKIFSRAGTWVMIGILGLTMVGFAFLANHFSAGESNSHWKQELQAQNAELK 60 Query: 63 AEAAEPDALQIEIRQAEKNILLNEYALQHNLPPETN--AWSFAGDLSGNXXXXXXXXXXX 120 E E +L+ ++ I LN+Y ++HN+P +T WS+ D S N Sbjct: 61 KEIKEDPSLK---DGYKETITLNDYRIEHNIPSDTGYTVWSYVTD-SANFTILTGLFTII 116 Query: 121 XXXXXXXXXXXXDTIKLLLTRSASRTEVYTAKYIAAXXXXXXXXXXXXXXXXXXXXXXXX 180 TIKLL+ R SR ++ +KYI Sbjct: 117 IAAGIVANEFNWGTIKLLMIRPLSRFQILMSKYITVLLFGLLLLLILFIGSTLLGLIFFG 176 Query: 181 X--XXXXDSYMYVKDHTVHQTPMLLSILGSYLSHLPFLLIAVTLAFMISAGFRSSIFAIV 238 + ++ KD V + M+ + +YLS L+ T+AFM+SA FR+S A+ Sbjct: 177 TGGETAANIHLIYKDGHVIEQNMMGHLATTYLSESVSALMVATMAFMLSAVFRNSSLAVG 236 Query: 239 IPLFVSVAGFV-MAIAMNGWPWTRFFIFSHTDLSGYFLGDPAVKGMTLGFSLAFIGVHLA 297 +F+ VAG A + W ++ +F++ DL+ Y G P +KGMT+ FSL + ++ Sbjct: 237 FSIFLLVAGTTATAFIAAKFDWAKYILFANVDLTQYVDGTPLIKGMTMTFSLVMLAIYFI 296 Query: 298 AMHLLSHTLFVKRDVS 313 LL+ +F+KRD++ Sbjct: 297 IFLLLAFGIFMKRDIA 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,260,510,989 Number of extensions: 38821638 Number of successful extensions: 154900 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 155054 Number of HSP's successfully gapped: 89 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)