BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0064.p (230 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B398.1 C3B398_BACMY Putative uncharacterized protein 158 4e-37 C3AL41.1 C3AL41_BACMY Putative uncharacterized protein 158 4e-37 C3BJY5.1 C3BJY5_9BACI Putative uncharacterized protein 157 6e-37 B1KNX7.1 B1KNX7_SHEWM Lipoprotein, putative 74 1e-11 B8CH25.1 B8CH25_SHEPW Lipoprotein, putative 74 1e-11 >C3B398.1 C3B398_BACMY Putative uncharacterized protein Length = 233 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 139/230 (60%), Gaps = 2/230 (0%) Query: 1 MRWTWRLMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVS-GADTDT 59 M+ W + L++T CS E + Q+LEL A + L +DNRNG I++S +D Sbjct: 1 MKKRWIKFCILITLILTGCSNSESKTKEQQLELSATDVKTLTLDNRNGNIDISTNPKSDK 60 Query: 60 IEVTAVVTTKGISMDKLKLKLRAEGAAAYLDASFGSQMLAMGSGAVDLVITLPRELAVEV 119 IE + KGISMDKLKL L A+ A L+ SF Q + VD+ ++LP+ + VE Sbjct: 61 IEASITAKAKGISMDKLKLDLSAQNGIATLNTSFDGQFFSNSETWVDVKLSLPKNIKVEF 120 Query: 120 D-SHRDGKLKVADLSAPLEVDNVNGDLEVIDTKGPVTLSNRDGDITVRNIETDVNIHNIN 178 +HRDG +K+++L + + + NVNG++++ + G V+++NRDG++ + + ++D+N+ N N Sbjct: 121 KKTHRDGDIKISNLDSDINILNVNGNIDISNVNGTVSVTNRDGNVDIVHTKSDINLDNNN 180 Query: 179 GHIAVTQVEGSVEAAVGDGSLELDHVTGDAVISQTGNGEIKLGAIGGNVS 228 G + + ++GS+ A +GDGS ++++ + I + +IK+ + G ++ Sbjct: 181 GKVVIKDIKGSIRAKIGDGSAAINNIEKNVTILGAKSDKIKVNNVKGKIT 230 >C3AL41.1 C3AL41_BACMY Putative uncharacterized protein Length = 233 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 139/230 (60%), Gaps = 2/230 (0%) Query: 1 MRWTWRLMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVS-GADTDT 59 M+ W + L++T CS E + Q+LEL A + L +DNRNG I++S +D Sbjct: 1 MKKRWIKFCILITLILTGCSNSESKTKEQQLELSATDVKTLTLDNRNGNIDISTNPKSDK 60 Query: 60 IEVTAVVTTKGISMDKLKLKLRAEGAAAYLDASFGSQMLAMGSGAVDLVITLPRELAVEV 119 IE + KGISMDKLKL L A+ A L+ SF Q + VD+ ++LP+ + VE Sbjct: 61 IEASITAKAKGISMDKLKLDLSAQNGIATLNTSFDGQFFSNSETWVDVKLSLPKNIKVEF 120 Query: 120 D-SHRDGKLKVADLSAPLEVDNVNGDLEVIDTKGPVTLSNRDGDITVRNIETDVNIHNIN 178 +HRDG +K+++L + + + NVNG++++ + G V+++NRDG++ + + ++D+N+ N N Sbjct: 121 KKTHRDGDIKISNLDSDINILNVNGNIDISNVNGTVSVTNRDGNVDIVHTKSDINLDNNN 180 Query: 179 GHIAVTQVEGSVEAAVGDGSLELDHVTGDAVISQTGNGEIKLGAIGGNVS 228 G + + ++GS+ A +GDGS ++++ + I + +IK+ + G ++ Sbjct: 181 GKVVIKDIKGSIRAKIGDGSAAINNIEKNVTILGAKSDKIKVNNVKGKIT 230 >C3BJY5.1 C3BJY5_9BACI Putative uncharacterized protein Length = 233 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 139/230 (60%), Gaps = 2/230 (0%) Query: 1 MRWTWRLMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVS-GADTDT 59 M+ W + L++T CS E + Q+LEL A + L +DNRNG I++S +D Sbjct: 1 MKKRWIKFCILITLILTGCSNSESKTKEQQLELSATDVKTLTLDNRNGNIDISTNPKSDK 60 Query: 60 IEVTAVVTTKGISMDKLKLKLRAEGAAAYLDASFGSQMLAMGSGAVDLVITLPRELAVEV 119 IE + KGISMDKLKL L A+ A L+ SF Q + VD+ ++LP+ + VE Sbjct: 61 IEASITAKAKGISMDKLKLGLSAKNGIATLNTSFDGQFFSNSETWVDVKLSLPKNIKVEF 120 Query: 120 D-SHRDGKLKVADLSAPLEVDNVNGDLEVIDTKGPVTLSNRDGDITVRNIETDVNIHNIN 178 +HRDG +KV++L + + + NVNG++++ + G V+++NRDG++ + + ++D+N+ N N Sbjct: 121 KKTHRDGDIKVSNLDSDINILNVNGNIDISNVNGTVSVTNRDGNVDIVHTKSDINLDNNN 180 Query: 179 GHIAVTQVEGSVEAAVGDGSLELDHVTGDAVISQTGNGEIKLGAIGGNVS 228 G + + ++GS+ A +GDGS ++++ + I + +IK+ + G ++ Sbjct: 181 GKVVIKDIKGSIRAKIGDGSAAINNIEKNVTILGAKSDKIKVNNVKGKIT 230 >B1KNX7.1 B1KNX7_SHEWM Lipoprotein, putative Length = 252 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 124/241 (51%), Gaps = 24/241 (9%) Query: 7 LMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVSGA-DTDTIEVTA- 64 L++ C++ V + + Q L+L+++ L +LV + G +E+ G I++ A Sbjct: 14 LLLSACIINVNGAGRAPTEHTHQSLQLDSNGLNELVAETGAGALEIQGVVGLSHIKLEAD 73 Query: 65 VVTTKGISMDKLKLKLRAEGAAAYLDASFGSQMLAMGSGAVDLVITLPRELAVEVDSHRD 124 + T +GI D + L L G A L A F S ++ S +DLV+ +P E+ +++D Sbjct: 74 IYTYEGI--DPI-LTLEKRGDTARLVADFDSYKVSGNSPYIDLVVKVPAEMKMDIDDGS- 129 Query: 125 GKLKVADLSAPLEVDNVNGDLEVI--------DTKGPVTLSNRDGDIT---------VRN 167 G +K+ SA ++V + +G +E+ D G +TLS+ +G+IT + Sbjct: 130 GSIKIQGSSADIDVKDGSGSMEIEGGKNLNIEDGSGSITLSDVNGNITLDDGSGSIEIMQ 189 Query: 168 IETDVNIHNINGHIAVTQVEGSVEAAVGDGSLELDHVTGDAVISQTGNGEIKLGAIGGNV 227 + DVN+++ +G +++ +V+G V G GS+++ G +I + G+G + I G V Sbjct: 190 VNGDVNVNDGSGSLSIKKVQGFVTIDDGSGSIDVMDTKGLKII-EAGSGSLSFDNIDGKV 248 Query: 228 S 228 S Sbjct: 249 S 249 >B8CH25.1 B8CH25_SHEPW Lipoprotein, putative Length = 251 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 20/239 (8%) Query: 7 LMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVSGADTDTIEVTAVV 66 L + GC++ V S G +++++EA + V + G++++ G T ++T V Sbjct: 14 LALSGCIINVNGASAGPLDHQKKQIQIEAAGIDTFVANTGAGDLKIQGV-TGLTQITVVA 72 Query: 67 TTKGISMDKLKLKLRAEGAAAYLDASFGSQMLAMGSGAVDLVITLPRELAVEVDSHRDGK 126 K L L G+ A L A F S + S +DL I +P ++ +++D G Sbjct: 73 DIYTYGDIKADLTLEKSGSNAKLVAEFDSNINFSRSPYIDLTIQVPADMILKIDDGS-GD 131 Query: 127 LKVADLSAPLEVDNVNGDLEV-----------------IDTKGPVTLSNRDGDITVRNIE 169 +++ ++SA +E+++ +GDL + +T G +TL + G I + I Sbjct: 132 IEIKNVSANIELEDGSGDLSIQGGHNLSITDGSGSVSITNTTGKLTLEDGSGSINLNGIG 191 Query: 170 TDVNIHNINGHIAVTQVEGSVEAAVGDGSLELDHVTGDAVISQTGNGEIKLGAIGGNVS 228 D +I + +G + VT V G V G G +E+D+ G +++ + G+G++ + I G+VS Sbjct: 192 GDTSIDDGSGDMTVTNVNGHVVIDDGSGDIEVDNTKGLSIV-EAGSGDLSVDNINGSVS 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,284,388,486 Number of extensions: 51449366 Number of successful extensions: 134787 Number of sequences better than 1.0e-05: 67 Number of HSP's gapped: 134541 Number of HSP's successfully gapped: 69 Length of query: 230 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 99 Effective length of database: 1,826,543,238 Effective search space: 180827780562 Effective search space used: 180827780562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)