BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0063.p (585 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZKG7.1 C0ZKG7_BREBN Two-component sensor histidine kinase EC=2... 485 e-135 C3FGT5.1 C3FGT5_BACTB Putative uncharacterized protein 310 3e-82 C3CYA1.1 C3CYA1_BACTU Putative uncharacterized protein 310 3e-82 C3CFE2.1 C3CFE2_BACTU Putative uncharacterized protein 310 3e-82 Q81GR9.1 Q81GR9_BACCR Sensor protein EC=2.7.13.3 307 2e-81 >C0ZKG7.1 C0ZKG7_BREBN Two-component sensor histidine kinase EC=2.7.3.- Length = 587 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 253/587 (43%), Positives = 367/587 (62%), Gaps = 6/587 (1%) Query: 1 MKIRSRLTLRFVLHSXXXXXXXXXXXXXXXYWVLMRLSEINLSDNFASVGLERLVESSKL 60 M I+SR+ L V+ YW L +S++ + F SVGL+RL+++ ++ Sbjct: 1 MNIKSRIALHLVMWLVLVGLILFVLAGFTLYWTLEEMSKVQSTREFESVGLQRLIQTIEV 60 Query: 61 GEDGIVFDRKLLEQVKHNNGWLQSLDENGKVEKSYNKPSDVPVQYNPGELAAYWRLQKDF 120 + I FD +LLE+V+ + GWLQ +DE G V S+ P DVP Y PG+L AYW + F Sbjct: 61 EGEDIRFDPELLEKVRDSGGWLQRIDEKGYVTDSFFTPPDVPSYYGPGQLTAYWLRKSPF 120 Query: 121 PYDVYLWIQEKYGRVYTLLYGVPKELEPLLQAVSEEGSAYLDGRLILPEKIGSRIRARGG 180 PY + LWIQEK G V+TLLYG+ + LQ V EE + + ++LP I ++++ + G Sbjct: 121 PYRLSLWIQEKDGVVHTLLYGMTNRDDDFLQQVIEEAD-HKNNEILLPPSIQNQLKRKAG 179 Query: 181 YAQLLDPEGRELAALNRPESIPGTYTVQELALRSKYPERYEYRMDFAYDENTGRTWVVG- 239 + QLLDP+G ELA+ N+P +TV+ELALRS YP+RY + YD+ +G+TWV+ Sbjct: 180 WVQLLDPKGVELASFNKPAKAIKDFTVEELALRSIYPDRYGASIVSHYDQISGQTWVLSY 239 Query: 240 -LPNKAEGHSSKNPLISAEMRIVLIGIAGMLGAVLLIFALLSFLNALRFGTPMFHMLAWL 298 LP G + PL++ E + + IG+ +L + +L+F ++S+L RFG P+ H+L WL Sbjct: 240 PLPGTTPG---EEPLLTPESKALYIGMGMLLLSAMLVFGIVSYLFGQRFGAPIVHVLRWL 296 Query: 299 DSLGRGAYDEPADRNGRPRSRLSSGKWRRRYSTFAEVMLSMDQLTVILRHDXXXXXXXXX 358 L G Y+EPA+ +G P S+ GK +R+Y + +V+ SMD L+ L + Sbjct: 297 TFLRGGQYEEPANADGVPLSQDKRGKRKRKYRIYQDVIESMDSLSQTLNRNEKLRHETEQ 356 Query: 359 XXXXWITGITHDLKTPLSSIKGYAHLLAEDAYDWSPEEVRKFSAIMLEKSAHMDTLISDL 418 WI G++HDLKTPLSS+KGYAHLL Y W+ EEV F+ I+L+KSA+M+ LI+DL Sbjct: 357 LRNEWIAGVSHDLKTPLSSVKGYAHLLGNAEYTWTAEEVHTFAKIILDKSAYMEDLINDL 416 Query: 419 AMTYRQRSGIHAPQMEEVEMNAWLGNALIQAAANPEYGEGRIIYQAPDQEITASIYRPWM 478 A+TYR R+G AP +E V++N+ A+ +AA +P Y EG I + + + +Y+PW Sbjct: 417 ALTYRLRNGQGAPTVELVDLNSCTAEAITEAAKHPLYPEGCIRFTPSPESVYMLVYKPWF 476 Query: 479 ERVVGNLTANALLHNSSDTRLTVTLSEGADGGLTIIFRDNGQGMDEQTAANLFERYYRGG 538 +R+V NL ANAL+HN S T +++ + +IF DNG GMDE+TA LFERYYRG Sbjct: 477 QRIVDNLVANALIHNESGTIVSIRVQAVGPATALLIFSDNGSGMDEETADRLFERYYRGT 536 Query: 539 DTASTTNGSGLGMAISKGLVEAMGGQITVSSAPGKGTEIRLSWDAQK 585 DT S T GSGLGM I+K LVEA GG I V +A G+GT I ++W+A++ Sbjct: 537 DTESRTEGSGLGMVITKALVEAFGGSIEVKTAVGQGTTISITWEAEQ 583 >C3FGT5.1 C3FGT5_BACTB Putative uncharacterized protein Length = 580 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 188/586 (32%), Positives = 295/586 (50%), Gaps = 15/586 (2%) Query: 1 MKIRSRLTLRFVL-HSXXXXXXXXXXXXXXXYWVLM---RLSEINLSDNFASVGLERLVE 56 M RL ++F++ H Y + + L E N+ D+ S + R + Sbjct: 1 MNFNKRLIIQFIMQHVFVLVTLLIAVVAAFTYLIFLLTSTLYEPNIPDS-DSFTISRYIS 59 Query: 57 SSKLGEDG-IVFDRKLLEQVKHNNGWLQSLDENGKVEKSYNKPSDVPVQYNPGELAAYWR 115 S EDG I ++ + +K N WLQ +DENGK+ +N P+DVP Y L AY + Sbjct: 60 S----EDGHISLQSEVQDLIKEKNDWLQVVDENGKILYHFNTPNDVPNTYTKTSLVAYIQ 115 Query: 116 LQKDFPYDVYLWIQEKYGRVYTLLYGVPKELEPLLQAVSEEGSAYLDGRLILPEKIGSRI 175 + Y W E + ++YG + LL A+ +E S+ L ++ + Sbjct: 116 HHIESNYKFTYWEIELEEKKVLVIYGGMLKSNALLTAIQKEHSSLTTDSFTLTDQEKQLL 175 Query: 176 RARGGYAQLLDPEGRELAALNRPESIPGTYTVQELALRSKYPERYEYRMDFAYDENTGRT 235 Q+ + G+E+ + P T++ ++AL K P ++ YD N+G Sbjct: 176 SKEKATIQIFNQNGKEV--FSYPTGKKKTFSAIQIALNEKEPWNHKENTSSFYDANSGNL 233 Query: 236 WVVGLPNKAEGHSSKNPLISAEMRIVLIGIAGMLGAVLLIFALLSFLNALRFGTPMFHML 295 VV N E + + + + LIG +L V + +LS +FG P+ H + Sbjct: 234 LVVTAKN--EHYYPDDEIEDVFTKKFLIGCGLILLIVFVYLVILSIWYGNKFGKPLLHAM 291 Query: 296 AWLDSLGRGAYDEPADRNGRPRSRLSSGKWRRRYSTFAEVMLSMDQLTVILRHDXXXXXX 355 WL ++ G Y+EP + G+P SGK + + F +V S++ L++ L+ + Sbjct: 292 RWLKNIAGGKYEEPISKKGKPVRFRRSGKEKWSFRLFRDVTSSLEHLSITLKKNDAMRQV 351 Query: 356 XXXXXXXWITGITHDLKTPLSSIKGYAHLLAEDAYDWSPEEVRKFSAIMLEKSAHMDTLI 415 WITG+THDLKTPLSSI GYA LL + Y+W+ ++++F ++M EKS +M TLI Sbjct: 352 LQQTREEWITGLTHDLKTPLSSIYGYALLLESNQYNWTDRDIQQFGSVMKEKSQYMTTLI 411 Query: 416 SDLAMTYRQRSGIHAPQMEEVEMNAWLGNALIQAAANPEYGEGRIIYQAPDQEITASIYR 475 DL++TY+ ++ Q VE+N ++ L+Q NP I + +I I Sbjct: 412 DDLSLTYQLKNNSLPAQHVNVEINQFVQKVLLQFINNPTLQNQNIEFVPSSNKIQYFIEE 471 Query: 476 PWMERVVGNLTANALLHNSSDTRLTVTLSEGADGGLTIIFRDNGQGMDEQTAANLFERYY 535 W +R++ NL NA+ HN+ T + V LS+ A+ T+ D+G+GMDE+T LFERYY Sbjct: 472 KWFQRIIENLLVNAVKHNNETTTVIVKLSQNAN-SFTLSISDDGKGMDEKTKELLFERYY 530 Query: 536 RGGDTASTTNGSGLGMAISKGLVEAMGGQITVSSAPGKGTEIRLSW 581 RG +T + G+GLG+AI+K LV A G I+V SA GKGT I L + Sbjct: 531 RGTNTEESNIGTGLGLAITKQLVHAHNGTISVDSALGKGTTIILVF 576 >C3CYA1.1 C3CYA1_BACTU Putative uncharacterized protein Length = 580 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 188/586 (32%), Positives = 295/586 (50%), Gaps = 15/586 (2%) Query: 1 MKIRSRLTLRFVL-HSXXXXXXXXXXXXXXXYWVLM---RLSEINLSDNFASVGLERLVE 56 M RL ++F++ H Y + + L E N+ D+ S + R + Sbjct: 1 MNFNKRLIIQFIMQHVFVLVTLLIAVVAAFTYLIFLLTSTLYEPNIPDS-DSFTISRYIS 59 Query: 57 SSKLGEDG-IVFDRKLLEQVKHNNGWLQSLDENGKVEKSYNKPSDVPVQYNPGELAAYWR 115 S EDG I ++ + +K N WLQ +DENGK+ +N P+DVP Y L AY + Sbjct: 60 S----EDGHISLQSEVQDLIKEKNDWLQVVDENGKILYHFNTPNDVPNTYTKTSLVAYIQ 115 Query: 116 LQKDFPYDVYLWIQEKYGRVYTLLYGVPKELEPLLQAVSEEGSAYLDGRLILPEKIGSRI 175 + Y W E + ++YG + LL A+ +E S+ L ++ + Sbjct: 116 HHIESNYKFTYWEIELEEKKVLVIYGGMLKSNALLTAIQKEHSSLTTDSFTLTDQEKQLL 175 Query: 176 RARGGYAQLLDPEGRELAALNRPESIPGTYTVQELALRSKYPERYEYRMDFAYDENTGRT 235 Q+ + G+E+ + P T++ ++AL K P ++ YD N+G Sbjct: 176 SKEKATIQIFNQNGKEV--FSYPTGKKKTFSAIQIALNEKEPWNHKENTSSFYDANSGNL 233 Query: 236 WVVGLPNKAEGHSSKNPLISAEMRIVLIGIAGMLGAVLLIFALLSFLNALRFGTPMFHML 295 VV N E + + + + LIG +L V + +LS +FG P+ H + Sbjct: 234 LVVTAKN--EHYYPDDEIEDVFTKKFLIGCGLILLIVFVYLVILSIWYGNKFGKPLLHAM 291 Query: 296 AWLDSLGRGAYDEPADRNGRPRSRLSSGKWRRRYSTFAEVMLSMDQLTVILRHDXXXXXX 355 WL ++ G Y+EP + G+P SGK + + F +V S++ L++ L+ + Sbjct: 292 RWLKNIAGGKYEEPISKKGKPVRFRRSGKEKWSFRLFRDVTSSLEHLSITLKKNDAMRQV 351 Query: 356 XXXXXXXWITGITHDLKTPLSSIKGYAHLLAEDAYDWSPEEVRKFSAIMLEKSAHMDTLI 415 WITG+THDLKTPLSSI GYA LL + Y+W+ ++++F ++M EKS +M TLI Sbjct: 352 LQQTREEWITGLTHDLKTPLSSIYGYALLLESNQYNWTDRDIQQFGSVMKEKSQYMTTLI 411 Query: 416 SDLAMTYRQRSGIHAPQMEEVEMNAWLGNALIQAAANPEYGEGRIIYQAPDQEITASIYR 475 DL++TY+ ++ Q VE+N ++ L+Q NP I + +I I Sbjct: 412 DDLSLTYQLKNNSLPAQHVNVEINQFVQKVLLQFINNPTLQNQNIEFVPSSNKIQYFIEE 471 Query: 476 PWMERVVGNLTANALLHNSSDTRLTVTLSEGADGGLTIIFRDNGQGMDEQTAANLFERYY 535 W +R++ NL NA+ HN+ T + V LS+ A+ T+ D+G+GMDE+T LFERYY Sbjct: 472 KWFQRIIENLLVNAVKHNNETTTVIVKLSQNAN-SFTLSISDDGKGMDEKTKELLFERYY 530 Query: 536 RGGDTASTTNGSGLGMAISKGLVEAMGGQITVSSAPGKGTEIRLSW 581 RG +T + G+GLG+AI+K LV A G I+V SA GKGT I L + Sbjct: 531 RGTNTEESNIGTGLGLAITKQLVHAHNGTISVDSALGKGTTIILVF 576 >C3CFE2.1 C3CFE2_BACTU Putative uncharacterized protein Length = 580 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 188/586 (32%), Positives = 295/586 (50%), Gaps = 15/586 (2%) Query: 1 MKIRSRLTLRFVL-HSXXXXXXXXXXXXXXXYWVLM---RLSEINLSDNFASVGLERLVE 56 M RL ++F++ H Y + + L E N+ D+ S + R + Sbjct: 1 MNFNKRLIIQFIMQHVFVLVTLLIAVVAAFTYLIFLLTSTLYEPNIPDS-DSFTISRYIS 59 Query: 57 SSKLGEDG-IVFDRKLLEQVKHNNGWLQSLDENGKVEKSYNKPSDVPVQYNPGELAAYWR 115 S EDG I ++ + +K N WLQ +DENGK+ +N P+DVP Y L AY + Sbjct: 60 S----EDGHISLQSEVQDLIKEKNDWLQVVDENGKILYHFNTPNDVPNTYTKTSLVAYIQ 115 Query: 116 LQKDFPYDVYLWIQEKYGRVYTLLYGVPKELEPLLQAVSEEGSAYLDGRLILPEKIGSRI 175 + Y W E + ++YG + LL A+ +E S+ L ++ + Sbjct: 116 HHIESNYKFTYWEIELEEKKVLVIYGGMLKSNALLTAIQKEHSSLTTDSFTLTDQEKQLL 175 Query: 176 RARGGYAQLLDPEGRELAALNRPESIPGTYTVQELALRSKYPERYEYRMDFAYDENTGRT 235 Q+ + G+E+ + P T++ ++AL K P ++ YD N+G Sbjct: 176 SKEKATIQIFNQNGKEV--FSYPTGKKKTFSAIQIALNEKEPWNHKENTSSFYDANSGNL 233 Query: 236 WVVGLPNKAEGHSSKNPLISAEMRIVLIGIAGMLGAVLLIFALLSFLNALRFGTPMFHML 295 VV N E + + + + LIG +L V + +LS +FG P+ H + Sbjct: 234 LVVTAKN--EHYYPDDEIEDVFTKKFLIGCGLILLIVFVYLVILSIWYGNKFGKPLLHAM 291 Query: 296 AWLDSLGRGAYDEPADRNGRPRSRLSSGKWRRRYSTFAEVMLSMDQLTVILRHDXXXXXX 355 WL ++ G Y+EP + G+P SGK + + F +V S++ L++ L+ + Sbjct: 292 RWLKNIAGGKYEEPISKKGKPVRFRRSGKEKWSFRLFRDVTSSLEHLSITLKKNDAMRQV 351 Query: 356 XXXXXXXWITGITHDLKTPLSSIKGYAHLLAEDAYDWSPEEVRKFSAIMLEKSAHMDTLI 415 WITG+THDLKTPLSSI GYA LL + Y+W+ ++++F ++M EKS +M TLI Sbjct: 352 LQQTREEWITGLTHDLKTPLSSIYGYALLLESNQYNWTDRDIQQFGSVMKEKSQYMTTLI 411 Query: 416 SDLAMTYRQRSGIHAPQMEEVEMNAWLGNALIQAAANPEYGEGRIIYQAPDQEITASIYR 475 DL++TY+ ++ Q VE+N ++ L+Q NP I + +I I Sbjct: 412 DDLSLTYQLKNNSLPAQHVNVEINQFVQKVLLQFINNPTLQNQNIEFVPSSNKIQYFIEE 471 Query: 476 PWMERVVGNLTANALLHNSSDTRLTVTLSEGADGGLTIIFRDNGQGMDEQTAANLFERYY 535 W +R++ NL NA+ HN+ T + V LS+ A+ T+ D+G+GMDE+T LFERYY Sbjct: 472 KWFQRIIENLLVNAVKHNNETTTVIVKLSQNAN-SFTLSISDDGKGMDEKTKELLFERYY 530 Query: 536 RGGDTASTTNGSGLGMAISKGLVEAMGGQITVSSAPGKGTEIRLSW 581 RG +T + G+GLG+AI+K LV A G I+V SA GKGT I L + Sbjct: 531 RGTNTEESNIGTGLGLAITKQLVHAHNGTISVDSALGKGTTIILVF 576 >Q81GR9.1 Q81GR9_BACCR Sensor protein EC=2.7.13.3 Length = 580 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 188/586 (32%), Positives = 294/586 (50%), Gaps = 15/586 (2%) Query: 1 MKIRSRLTLRFVL-HSXXXXXXXXXXXXXXXYWVLM---RLSEINLSDNFASVGLERLVE 56 M RL ++F++ H Y + + L E N+ D+ S + R + Sbjct: 1 MNFNKRLIIQFIMQHVFVLVTLLIAVVAAFTYLIFLLTSTLYEPNIPDS-DSFTISRYIS 59 Query: 57 SSKLGEDG-IVFDRKLLEQVKHNNGWLQSLDENGKVEKSYNKPSDVPVQYNPGELAAYWR 115 S EDG I ++ + +K N WLQ +DENGK+ +N P+DVP Y L AY + Sbjct: 60 S----EDGHISLQSEVQDLIKEKNDWLQVVDENGKILYHFNTPNDVPNAYTKTSLVAYIQ 115 Query: 116 LQKDFPYDVYLWIQEKYGRVYTLLYGVPKELEPLLQAVSEEGSAYLDGRLILPEKIGSRI 175 + Y W E + ++YG + LL A+ ++ S+ L ++ + Sbjct: 116 HHIESNYKFTYWEIELEEKKVLVIYGGMLKSNALLTAIQKDHSSLTMDSFTLTDQEKQLL 175 Query: 176 RARGGYAQLLDPEGRELAALNRPESIPGTYTVQELALRSKYPERYEYRMDFAYDENTGRT 235 Q+ + G E+ A P T++ ++AL K P ++ YD N+G Sbjct: 176 SKEKAALQIFNQNGEEVFAY--PAGKKKTFSAIQIALNEKEPWNHKENTSSFYDANSGNL 233 Query: 236 WVVGLPNKAEGHSSKNPLISAEMRIVLIGIAGMLGAVLLIFALLSFLNALRFGTPMFHML 295 VV N E + + + + LIG +L V + +LS +FG P+ H + Sbjct: 234 LVVTAKN--EHYYPDDEIEDVFTKKFLIGCGLILLIVFVYLVILSIWYGNKFGKPLLHAM 291 Query: 296 AWLDSLGRGAYDEPADRNGRPRSRLSSGKWRRRYSTFAEVMLSMDQLTVILRHDXXXXXX 355 WL ++ G Y+EP + G+P SGK + + F +V S++ L++ L+ + Sbjct: 292 RWLKNIAGGKYEEPISKKGKPVRFRRSGKEKWSFRLFRDVTSSLEHLSITLKKNDAMRQV 351 Query: 356 XXXXXXXWITGITHDLKTPLSSIKGYAHLLAEDAYDWSPEEVRKFSAIMLEKSAHMDTLI 415 WITG+THDLKTPLSSI GYA LL + Y+W+ ++++F ++M EKS +M TLI Sbjct: 352 LQQTREEWITGLTHDLKTPLSSIYGYALLLESNQYNWTDRDIQQFGSVMKEKSQYMTTLI 411 Query: 416 SDLAMTYRQRSGIHAPQMEEVEMNAWLGNALIQAAANPEYGEGRIIYQAPDQEITASIYR 475 DL++TY+ ++ Q VE+N ++ L+Q NP I + +I I Sbjct: 412 DDLSLTYQLKNNSLPAQHVNVEINQFVQKVLLQFINNPTLQNQNIEFVPSSNKIQYFIEE 471 Query: 476 PWMERVVGNLTANALLHNSSDTRLTVTLSEGADGGLTIIFRDNGQGMDEQTAANLFERYY 535 W +R++ NL NA+ HN+ T + V LS+ A+ T+ D+G+GMDE+T LFERYY Sbjct: 472 KWFQRIIENLLVNAVKHNNETTTVIVKLSQNAN-SFTLSISDDGKGMDEKTKELLFERYY 530 Query: 536 RGGDTASTTNGSGLGMAISKGLVEAMGGQITVSSAPGKGTEIRLSW 581 RG +T + G+GLG+AI+K LV A G I+V SA GKGT I L + Sbjct: 531 RGTNTEESNIGTGLGLAITKQLVHAHNGTISVDSALGKGTTIILVF 576 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,460,752,471 Number of extensions: 151768039 Number of successful extensions: 472006 Number of sequences better than 1.0e-05: 16224 Number of HSP's gapped: 461794 Number of HSP's successfully gapped: 16241 Length of query: 585 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 444 Effective length of database: 1,732,333,088 Effective search space: 769155891072 Effective search space used: 769155891072 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)