BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0058.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2G5I3.1 C2G5I3_9SPHI Putative uncharacterized protein 110 2e-22 C3QFJ4.1 C3QFJ4_9BACE Predicted protein 96 3e-18 C2M684.1 C2M684_CAPGI Putative uncharacterized protein 95 7e-18 C3JMI7.1 C3JMI7_RHOER Putative uncharacterized protein 80 2e-13 C0ZU14.1 C0ZU14_RHOE4 Putative uncharacterized protein 67 1e-09 >C2G5I3.1 C2G5I3_9SPHI Putative uncharacterized protein Length = 180 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 104/182 (57%), Gaps = 22/182 (12%) Query: 118 IGGNAPEFFDGQSDLIHEGNQKYIFYLSLIHPFKPESMISIFIPEDYEEYLENNIYPNCS 177 IGG PE + Y FY + HP KP+ M+SI I D++ LENNIYPN + Sbjct: 19 IGGKPPEIIENSIP------DDYKFYAVIHHPEKPDKMLSILIHSDFDVLLENNIYPNIA 72 Query: 178 IKAIEHPIST--ESTEAMFTNPGLIKHAISGGELSNDEKSMDQSFLIKVGGNPRLIQNED 235 ++ IEH S + T+ + ++ G+ ++IS + N+ + +K GG PRLIQ + Sbjct: 73 VQVIEHEHSEIGDRTDKVISSLGI--YSISKYAVVNESDFL----FLKAGGEPRLIQPKS 126 Query: 236 YYLTKLKEESISFLFQVDEEGYPETLLQEDCNYPFGFGSLYIYAKMGTTEVQHPVAGFWQ 295 +Y +L++++ SF Q++EEGY E+ +Y F +G+LY+Y T EV +AGFWQ Sbjct: 127 HYYEQLEKDNYSFFLQIEEEGY-----AEESDYVFMYGALYLYKNKVTDEV---IAGFWQ 178 Query: 296 FS 297 +S Sbjct: 179 YS 180 >C3QFJ4.1 C3QFJ4_9BACE Predicted protein Length = 196 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 14/206 (6%) Query: 93 ERYLDMRLLAVH-GLAYYASEDRAGWIGGNAPEFFDGQSDLIHEGNQKYIFYLSLIHPFK 151 ER L R A++ G+ Y +D GW+GGNAP FD + + + + Y FYL+ +P Sbjct: 4 ERILKTRENAIYYGIGEY-QKDCFGWVGGNAPACFDDK--YLSDKDNLY-FYLTFQNPLN 59 Query: 152 PESMISIFIPEDYEEYLENNIYPNCSIKAIEHPISTESTEAMFTNPGLIKHAISGGELSN 211 P ISIF P D++ LE N YP+C + +EH +S++S + +P I S E+S Sbjct: 60 PNKQISIFTP-DFDIALEYNTYPDCKLLLVEHELSSQSKSDRYKHPE-IDEIYSIYEMST 117 Query: 212 DEKSMDQSFLIKVGGNPRLIQNEDYYLTKLKEESISFLFQVDEEGYPETLLQEDCNYPFG 271 ++ +++ IK GGN IQ K+ ++ SF+FQ++E + +D + F Sbjct: 118 EKDMPEKNCAIKFGGNVMPIQWGLDNDGKVVKDGNSFIFQINE------ICMKDISV-FM 170 Query: 272 FGSLYIYAKMGTTEVQHPVAGFWQFS 297 G +Y+Y K+ +V +P +W++S Sbjct: 171 AGCIYVYGKIEGNKVTNPFVAYWEYS 196 >C2M684.1 C2M684_CAPGI Putative uncharacterized protein Length = 182 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 16/187 (8%) Query: 111 SEDRAGWIGGNAPEFFDGQSDLIHEGNQKYIFYLSLIHPFKPESMISIFIPEDYEEYLEN 170 +E G IGGN P + + I EG Y FY +L+HP K + M+SI I D+ + + + Sbjct: 12 NESIKGRIGGNPPINIETE---IPEG---YAFYATLVHPEKEDKMLSILISNDFNQLIHH 65 Query: 171 NIYPNCSIKAIEHPISTESTEAMFTNPGLIKHAISGGELSNDEKSMDQSFLIKVGGNPRL 230 YPN IK +EH S E + + P + K + S S+D++ + L++VGG P Sbjct: 66 QSYPNILIKVVEHNFSYEGDKYNLSLPQIGKTS-SISNYSSDKQKFN---LVQVGGTPDF 121 Query: 231 IQNEDYYLTKLKEESISFLFQVDEEGYPETLLQEDCNYPFGFGSLYIYAKMGTTEVQHPV 290 I ++ Y KL + SF +DEEGY ++ F +G++Y+Y T E+ + Sbjct: 122 IDDDPVYYEKLLADDYSFYLSIDEEGYDVPSMKMVI---FSYGAVYLYKHNKTGEI---I 175 Query: 291 AGFWQFS 297 AGFWQ++ Sbjct: 176 AGFWQYT 182 >C3JMI7.1 C3JMI7_RHOER Putative uncharacterized protein Length = 197 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 15/200 (7%) Query: 103 VHGLAYYASEDRAGW-IGGNAPEFFDGQSDLIHEGNQKYIFYL-SLIHPFKPESMISIFI 160 VH L +S+ ++G IGG P+ F GQ+ L + +Y+ L + P+ +S+FI Sbjct: 7 VH-LGVGSSDSKSGARIGGRPPQVFAGQAIL---KSHEYLLTLEAHTAPWLGVRELSVFI 62 Query: 161 PEDYEEYLENNIYPNCSIKAIEHPISTESTEAMFTNPGLIKHAISGGELSNDEKSMDQSF 220 + ++ YP+ ++A+ HP S+ S E+ ++ GL A+ + +D++ M Sbjct: 63 RRGFSIGDDDLEYPDIGVRAVLHPPSSRSAESAGSHAGLGSAALI--RIPSDDEVMP--- 117 Query: 221 LIKVGGNPRLIQNEDYYLTKLKEESISFLFQVDEEGYP---ETLLQEDCNYPFGFGSLYI 277 L+ + P LIQNE Y ++ + SFLFQ++EEG+P E+ Y FG+GSLY Sbjct: 118 LVLIAPRPVLIQNEPSYAESVEADGHSFLFQINEEGWPVVAESHPDFVEEYLFGYGSLYF 177 Query: 278 YAKMGTTE-VQHPVAGFWQF 296 Y T V+ V GF F Sbjct: 178 YGSTDATGLVREVVPGFLDF 197 >C0ZU14.1 C0ZU14_RHOE4 Putative uncharacterized protein Length = 197 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 15/185 (8%) Query: 118 IGGNAPEFFDGQSDL-IHEGNQKYIFYL-SLIHPFKPESMISIFIPEDYEEYLENNIYPN 175 IGG P+ F GQ L +HE Y+ L + + +S+FI + ++ YP+ Sbjct: 22 IGGRPPQVFAGQPILQMHE----YLLTLEAHTASWLGARELSVFIRRGFSIGDDDLEYPD 77 Query: 176 CSIKAIEHPISTESTEAMFTNPGLIKHAISGGELSNDEKSMDQSFLIKVGGNPRLIQNED 235 A+ HP S+ S E+ T+ GL A+ L D++ M L+ + P LIQNE Sbjct: 78 IGFSAVLHPPSSRSAESAGTHEGLGSAALV--NLPADDEVMP---LVLIAPQPVLIQNEP 132 Query: 236 YYLTKLKEESISFLFQVDEEGYP---ETLLQEDCNYPFGFGSLYIYAKMGTTEVQHPVA- 291 Y ++ + FLFQ++EEG+P E + Y FG+GS+Y Y + V Sbjct: 133 SYADAVEADGHRFLFQINEEGWPVVAEPQPEFVEEYLFGYGSVYFYGSADAAGLADEVVP 192 Query: 292 GFWQF 296 GF F Sbjct: 193 GFLDF 197 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,784,606,046 Number of extensions: 76473166 Number of successful extensions: 140820 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 140807 Number of HSP's successfully gapped: 6 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)