BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0056.p
         (93 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z8B3.1 C0Z8B3_BREBN Probable transcriptional regulator              154   2e-36
B3KBS1.1 B3KBS1_9BACI Regulatory protein ArsR                         140   3e-32
B1DIC0.1 B1DIC0_9BACL Transcriptional regulator, ArsR family          122   1e-26
A9NG94.1 A9NG94_ACHLI Transcriptional regulator, ArsR family           71   2e-11
C4L2F1.1 C4L2F1_EXISA Transcriptional regulator, ArsR family           63   1e-08

>C0Z8B3.1 C0Z8B3_BREBN Probable transcriptional regulator
          Length = 93

 Score =  154 bits (390), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 84/93 (90%)

Query: 1  MADVDHDLVQAVKVYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQL 60
          MA+ + ++ QAVKVYKALGEPTRLKIALML K+ NQC TAIGE+L  VAGSTLSHHLKQL
Sbjct: 1  MAENEEEMGQAVKVYKALGEPTRLKIALMLAKESNQCFTAIGERLETVAGSTLSHHLKQL 60

Query: 61 TESGLIQSQKNGSFIHYSVDQEVAKKFAPYLLA 93
          T+SGLI S+KNGSFIHYSV+QEVA+KFAPYLLA
Sbjct: 61 TDSGLINSRKNGSFIHYSVNQEVAEKFAPYLLA 93


>B3KBS1.1 B3KBS1_9BACI Regulatory protein ArsR
          Length = 93

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 80/93 (86%)

Query: 1  MADVDHDLVQAVKVYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQL 60
          M +    + QAVKVYKALGEPTRLKIAL+L K+ N C TA+GE+L  VAGSTLSHHLKQL
Sbjct: 1  MGENQEAIGQAVKVYKALGEPTRLKIALLLAKESNLCFTAVGERLESVAGSTLSHHLKQL 60

Query: 61 TESGLIQSQKNGSFIHYSVDQEVAKKFAPYLLA 93
          T+SGLI S+KNGSFIHY+V++EVA+KFAP+LLA
Sbjct: 61 TDSGLIDSRKNGSFIHYNVNREVAEKFAPFLLA 93


>B1DIC0.1 B1DIC0_9BACL Transcriptional regulator, ArsR family
          Length = 93

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 77/93 (82%)

Query: 1  MADVDHDLVQAVKVYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQL 60
          M + + ++ QAVKVYKALGEPTR+KIA++L +++N C + IG +L  VAGSTLSHHLKQL
Sbjct: 1  MVEDNEEVKQAVKVYKALGEPTRIKIAMLLTEEQNLCCSDIGSKLESVAGSTLSHHLKQL 60

Query: 61 TESGLIQSQKNGSFIHYSVDQEVAKKFAPYLLA 93
          TE GL+  +K+G++I+YSV++EVA K+APYLL 
Sbjct: 61 TECGLLTLRKDGTYIYYSVNKEVALKYAPYLLG 93


>A9NG94.1 A9NG94_ACHLI Transcriptional regulator, ArsR family
          Length = 108

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 2/78 (2%)

Query: 14 VYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQLTESGLIQSQKNGS 73
          V KALG+PTRLKI  ML    + C   I E + H+  STLS+H+K LTESGL++  K+GS
Sbjct: 10 VIKALGDPTRLKILDML-SCGSLCACEILENV-HITQSTLSYHMKMLTESGLVEGNKDGS 67

Query: 74 FIHYSVDQEVAKKFAPYL 91
          ++ YS++  +  KF  Y+
Sbjct: 68 WMRYSLNTHMTDKFMEYM 85


>C4L2F1.1 C4L2F1_EXISA Transcriptional regulator, ArsR family
          Length = 120

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 7   DLVQAVKVYKALGEPTRLKIALMLIKQENQCVTAIGEQLGHVAGSTLSHHLKQLTESGLI 66
           D  +  +++KA  +PTRLK+  +L  +   CV  +   +GH + +T SHHL+ L E GL+
Sbjct: 27  DAPRVSRLFKAFADPTRLKVLYVLTLEHELCVCDVAAVIGH-SNATASHHLRTLLEQGLV 85

Query: 67  QSQKNGSFIHYSVDQE 82
           + +K G  ++YS+D E
Sbjct: 86  KYRKEGKVVYYSLDDE 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 482,400,975
Number of extensions: 15430550
Number of successful extensions: 50250
Number of sequences better than 1.0e-05: 121
Number of HSP's gapped: 52352
Number of HSP's successfully gapped: 121
Length of query: 93
Length of database: 3,060,696,203
Length adjustment: 62
Effective length of query: 31
Effective length of database: 2,476,593,273
Effective search space: 76774391463
Effective search space used: 76774391463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)