BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0054.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZHY3.1 C0ZHY3_BREBN Putative uncharacterized protein 135 8e-30 B3K6N7.1 B3K6N7_9BACI NLP/P60 protein 124 1e-26 C0ZDC2.1 C0ZDC2_BREBN Putative uncharacterized protein 114 2e-23 B0A8A8.1 B0A8A8_9CLOT Putative uncharacterized protein 112 6e-23 B3K527.1 B3K527_9BACI NLP/P60 protein 111 1e-22 >C0ZHY3.1 C0ZHY3_BREBN Putative uncharacterized protein Length = 166 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 93/149 (62%), Gaps = 6/149 (4%) Query: 203 TGYISAKPKYTDYTNSSLAEKQAEALIAYGKTFLGTPYEFGASPDQTATFDCSSFVKRVF 262 T ++ P + ++ + +A+ +IA G+ ++GTPY+FGAS + TA FDCSSF KRVF Sbjct: 19 TAIVAPLPGEKNVAEAAWTQSKADKVIATGRKYMGTPYKFGASSNTTAVFDCSSFTKRVF 78 Query: 263 EDTLSIELPRVSYDQAKKGKEVGLDGLRPGDLLFFSARGLD----IGHVAIYAGNNQILH 318 + + LPR S DQAK G V L+ GDL+FF A I HVAIYAGNN++LH Sbjct: 79 KVAVGKSLPRTSRDQAKVGTSVSKSNLKKGDLVFFKASKTTTSKRITHVAIYAGNNKLLH 138 Query: 319 TYSTKLNVHVEAFDG-QWKKRFVTARRIL 346 TY K V F G W+KRFV+ARR+L Sbjct: 139 TYG-KPGVTYSTFKGTSWEKRFVSARRVL 166 >B3K6N7.1 B3K6N7_9BACI NLP/P60 protein Length = 164 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 6/123 (4%) Query: 228 LIAYGKTFLGTPYEFGASPDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKEVGLD 287 ++ +GK ++GTPY+FGAS T FDCSSF+K +F+ + LPR S Q+K GK V Sbjct: 44 VVNFGKQYMGTPYKFGASTSTTRVFDCSSFMKHIFKK-YGVNLPRTSAAQSKVGKAVSKS 102 Query: 288 GLRPGDLLFFS----ARGLDIGHVAIYAGNNQILHTYSTKLNVHVEAFDGQWKKRFVTAR 343 LR GDL+FFS A G ++ HVA+Y GNN+ILHTY K V + + G W K ++ AR Sbjct: 103 NLRAGDLVFFSSGSRANGRNVTHVAVYMGNNKILHTYG-KPGVTISSLSGNWSKTYLKAR 161 Query: 344 RIL 346 R+L Sbjct: 162 RVL 164 >C0ZDC2.1 C0ZDC2_BREBN Putative uncharacterized protein Length = 227 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 6/126 (4%) Query: 225 AEALIAYGKTFLGTPYEFGASPDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKEV 284 A+ +I+ G + G PY+FG+S T TFDCSSF +RVF++ + + LPR S Q+K G++V Sbjct: 104 ADQVISEGMKYKGVPYKFGSSKKTTRTFDCSSFTQRVFKE-VGVSLPRDSRQQSKVGQKV 162 Query: 285 GLDGLRPGDLLFFSARGLD---IGHVAIYAGNNQILHTYSTKLNVHVEAFDG-QWKKRFV 340 D L+ GDL+FF + G I HVAIYAG+N++LHTY K V F G W+KRF Sbjct: 163 SKDQLQKGDLVFFHSYGSSSSRITHVAIYAGDNKLLHTYG-KPGVTTTNFKGTSWEKRFE 221 Query: 341 TARRIL 346 RR++ Sbjct: 222 VGRRVI 227 >B0A8A8.1 B0A8A8_9CLOT Putative uncharacterized protein Length = 305 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 115/225 (51%), Gaps = 20/225 (8%) Query: 135 DWVPGTQSVQISSGIIYETSVLHGVNLRSLPDAKSAPVSPELLSAGTKVHVVSVVDALWL 194 D+V G S + GI + G+N+R P + + LS G V V+S + W Sbjct: 88 DYVSGYSSSSDNKGITRYVNASVGLNVRKGPSTSYSKLGK--LSYGKSVKVLSTSNG-WS 144 Query: 195 KVKTGDNQTGYISA------KPKYTDYTNSS--LAEKQAEALIAYGKTFLGTPYEFGAS- 245 K+ + + +T Y+ + KP T N S K A ALI+Y K FLG PY +GA Sbjct: 145 KI-SYNGRTAYVKSTYLQAKKPSSTSSKNDSDTNVSKSASALISYAKKFLGKPYVWGAQG 203 Query: 246 PDQTATFDCSSFVKRVFEDTLSIELPRVSYDQAKKGKEVGLDGLRPGDLLFFSARGLDIG 305 P+ +FDCS F VF++ I LPR S Q+K G V ++ GDLLFF G + G Sbjct: 204 PN---SFDCSGFTYYVFKNKAGITLPRNSAVQSKYGTYVSRSNIKGGDLLFFDTNGSNNG 260 Query: 306 ---HVAIYAGNNQILH-TYSTKLNVHVEAFDGQWKKRFVTARRIL 346 HV +Y GN Q++H +YS + V V + ++ FV ARR+L Sbjct: 261 AVSHVGLYIGNGQMIHASYSQRKIVTVSINNSYYQNAFVNARRVL 305 >B3K527.1 B3K527_9BACI NLP/P60 protein Length = 268 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 43/223 (19%) Query: 159 VNLRSLPDAKSAPVSPELLSAGTKVHVVSVVDALWLKVKTGDNQTGYISAKPKYTDYTNS 218 V +R+ P V + + G +V ++ + W K+KT D + GY S+K Y N Sbjct: 54 VYMRNKPSTSGKVV--DRVHKGERVQILGKSSS-WYKIKTSDGKQGYASSK-----YINQ 105 Query: 219 SL---------------AEKQAEALIAYGKTFLGTPYEFGASPDQTATFDCSSFVKRVFE 263 S A E +I+ G +LGTPYEFG++ + T+TFDCS+FV+R F Sbjct: 106 SSGSSNTSGNSGSTAPSASASVEKVISAGMKYLGTPYEFGSNRNSTSTFDCSAFVRRAFM 165 Query: 264 DTLSIELPRVSYDQAKKGKEVG-----LDGLRPGDLLFFSAR---------GLD-----I 304 D +I LP S Q + K+ G ++ L+ GDL+FF + GLD I Sbjct: 166 DGANITLPSDSRKQGQYVKDKGTAVYNVNQLKRGDLVFFMSYRGSSASAYAGLDKSKQRI 225 Query: 305 GHVAIYAGNNQILHTYSTKL-NVHVEAFDGQWKKRFVTARRIL 346 HVAIY G+N++LHTYS + V V F WK RF+ +L Sbjct: 226 THVAIYLGDNKLLHTYSKQSGGVLVGNFGDSWKHRFMHGGSVL 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,918,808,232 Number of extensions: 76240423 Number of successful extensions: 193985 Number of sequences better than 1.0e-05: 2022 Number of HSP's gapped: 192896 Number of HSP's successfully gapped: 2033 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)