BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0052.p (503 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1YG65.1 B1YG65_EXIS2 Amino acid permease-associated region 617 e-174 Q2BCU4.1 Q2BCU4_9BACI YdgF 615 e-174 A7ZAK2.1 A7ZAK2_BACA2 YdgF 611 e-173 B4AK31.1 B4AK31_BACPU Aromatic amino acid transport protein AroP... 609 e-172 A8FJ79.1 A8FJ79_BACP2 APC family amino acid-polyamine-organocati... 608 e-172 >B1YG65.1 B1YG65_EXIS2 Amino acid permease-associated region Length = 455 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 305/446 (68%), Positives = 337/446 (75%) Query: 47 QELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMRALGE 106 Q LKRDL NRHVQ KAIQLAGPSI+FAYL+VGIA+FFVMRALGE Sbjct: 4 QGLKRDLSNRHVQLIAIGGTIGTGLFLGSGKAIQLAGPSIVFAYLLVGIAIFFVMRALGE 63 Query: 107 LLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWFDIPQWV 166 LLLSKAGYQS TDIAEDYLGPRAAFVTGWTYWFCWIMTAMAD+IAVGVYV+YWFDIPQW+ Sbjct: 64 LLLSKAGYQSLTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADVIAVGVYVKYWFDIPQWI 123 Query: 167 PAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAGTVALS 226 PAV TVK FGELEFWFALIK F TDAG V + Sbjct: 124 PAVIALLILLGFNLLTVKLFGELEFWFALIKVVTILALIGVGIVLLVIGFNTDAGPVTVK 183 Query: 227 NIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIPLRILF 286 N+W HGG+FPNG++GFLLSFQMVVFA+VGVELVGVSAAETA+P+K+IPSAINKIPLRILF Sbjct: 184 NLWQHGGMFPNGVTGFLLSFQMVVFAYVGVELVGVSAAETADPKKNIPSAINKIPLRILF 243 Query: 287 FYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNSGMFST 346 FYVGA++ LL IN WT L ESPFVKTFSL+GIP+AAGIINFVVLTSAASACNSGMFST Sbjct: 244 FYVGALLVLLMINPWTGLNATESPFVKTFSLIGIPVAAGIINFVVLTSAASACNSGMFST 303 Query: 347 SRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIVTTISA 406 SRILYNL +QAP F+KLNKNHVP+NAL VSTLV+S GALLSKL+P AF IVTTISA Sbjct: 304 SRILYNLGNQKQAPQSFSKLNKNHVPANALFVSTLVVSGGALLSKLLPGQAFSIVTTISA 363 Query: 407 ICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXXXEETR 466 ICFIWVWGVIL+CHL+YKKT+PEL A S FKAPLTPF+NY+V +ETR Sbjct: 364 ICFIWVWGVILVCHLKYKKTQPELHAASTFKAPLTPFVNYLVLGLFTLILIVMLVADETR 423 Query: 467 PAXXXXXXXXXXXXXXYSTNRRKREK 492 PA Y +K +K Sbjct: 424 PALLLTPVWFIGLFILYQLRTKKHQK 449 >Q2BCU4.1 Q2BCU4_9BACI YdgF Length = 456 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 304/425 (71%), Positives = 335/425 (78%) Query: 44 VAPQELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMRA 103 +A QELKRDL NRHVQ KAIQ AGPSII AYL+VG A+FFVMRA Sbjct: 1 MAQQELKRDLANRHVQLIAIGGTIGTGLFLGSGKAIQQAGPSIILAYLLVGTALFFVMRA 60 Query: 104 LGELLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWFDIP 163 LGELLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMAD+IAVGVYVQYWFDIP Sbjct: 61 LGELLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADVIAVGVYVQYWFDIP 120 Query: 164 QWVPAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAGTV 223 QWVPA+ TVK FGELEFWFALIK FKTDAGTV Sbjct: 121 QWVPAIISLIILLGFNLLTVKLFGELEFWFALIKVITILGLIAVGIFLLITGFKTDAGTV 180 Query: 224 ALSNIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIPLR 283 +LSN+W HGG FPNG +GFL SFQMVVFAFVGVELVGVSAAET++P+K+IP+AINKIPLR Sbjct: 181 SLSNLWEHGGAFPNGAAGFLFSFQMVVFAFVGVELVGVSAAETSSPQKNIPAAINKIPLR 240 Query: 284 ILFFYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNSGM 343 ILFFYVGA+I LLSIN WT+L AESPFVKTFSL+GIP+AAGIINFVVLTSAASACNSG+ Sbjct: 241 ILFFYVGALIVLLSINPWTDLNAAESPFVKTFSLIGIPVAAGIINFVVLTSAASACNSGL 300 Query: 344 FSTSRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIVTT 403 FSTSRIL++LS+N QAPA +LNK HVP+NAL +S LV+SVGALLSKL+P AF IVTT Sbjct: 301 FSTSRILFSLSKNNQAPARLNRLNKQHVPANALWLSALVVSVGALLSKLLPGQAFAIVTT 360 Query: 404 ISAICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXXXE 463 ISAICFIWVWGVILICHL+YK+T+PEL A S FKAP TP +NY+V E Sbjct: 361 ISAICFIWVWGVILICHLKYKRTRPELHAESAFKAPFTPLVNYLVLALFAMILLIMLIAE 420 Query: 464 ETRPA 468 ETRPA Sbjct: 421 ETRPA 425 >A7ZAK2.1 A7ZAK2_BACA2 YdgF Length = 448 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 305/445 (68%), Positives = 335/445 (75%) Query: 47 QELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMRALGE 106 +ELKRDL NRHVQ KAIQLAGPSIIFAY IVGIA+FFVMRALGE Sbjct: 4 RELKRDLSNRHVQLIAIGGTIGTGLFLGSGKAIQLAGPSIIFAYFIVGIALFFVMRALGE 63 Query: 107 LLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWFDIPQWV 166 LLLSKAGYQS TDIAE YLGPRAAFVTGWTYWFCWIMTAMAD+IAVGVYV+YWFDIPQW+ Sbjct: 64 LLLSKAGYQSLTDIAEAYLGPRAAFVTGWTYWFCWIMTAMADVIAVGVYVKYWFDIPQWI 123 Query: 167 PAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAGTVALS 226 PA+ TVK FGELEFWFALIK FKT GTV+ + Sbjct: 124 PALICLLILLGLNLLTVKIFGELEFWFALIKVVTILALIVIGVVLLVIGFKTHTGTVSAA 183 Query: 227 NIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIPLRILF 286 N+W HGG+FPNG SGFLLSFQMV+FA+VGVELVGVSAAET+NP+K+IPSAINKIPLRILF Sbjct: 184 NLWEHGGLFPNGFSGFLLSFQMVIFAYVGVELVGVSAAETSNPKKNIPSAINKIPLRILF 243 Query: 287 FYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNSGMFST 346 FYVGA++ LL IN W +L AESPFVKTFSLVGIP+AAGIINFVVLTSAASACNSGMFST Sbjct: 244 FYVGALLILLCINPWMQLNAAESPFVKTFSLVGIPLAAGIINFVVLTSAASACNSGMFST 303 Query: 347 SRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIVTTISA 406 SRILYNLS+ +QAPA FAKLNKNHVPS AL +S +VLS GALLSKLIPE AFGIVTTISA Sbjct: 304 SRILYNLSKTKQAPASFAKLNKNHVPSRALWISVIVLSAGALLSKLIPEAAFGIVTTISA 363 Query: 407 ICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXXXEETR 466 ICFIWVWGVIL+CH+RY+KT+P+L A S FKAP PFINY V + TR Sbjct: 364 ICFIWVWGVILVCHIRYRKTRPDLHASSSFKAPFAPFINYAVLALFAVILVIMLFADATR 423 Query: 467 PAXXXXXXXXXXXXXXYSTNRRKRE 491 PA Y RK + Sbjct: 424 PALLLTPLWFIGLFLIYRARGRKTD 448 >B4AK31.1 B4AK31_BACPU Aromatic amino acid transport protein AroP (General aromatic aminoacid permease) Length = 448 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 299/443 (67%), Positives = 337/443 (76%) Query: 47 QELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMRALGE 106 QELKRDL NRHVQ KAIQLAGPSIIFAYLIVG+A+FFVMRALGE Sbjct: 4 QELKRDLSNRHVQLIAIGGTIGTGLFLGSGKAIQLAGPSIIFAYLIVGMAIFFVMRALGE 63 Query: 107 LLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWFDIPQWV 166 LLLSK GYQS TDIAEDYLGP A+FVTGWTYWFCWIMTAMAD+IAVGVYVQYWFDIPQW+ Sbjct: 64 LLLSKTGYQSLTDIAEDYLGPWASFVTGWTYWFCWIMTAMADVIAVGVYVQYWFDIPQWI 123 Query: 167 PAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAGTVALS 226 PA+ TVK FGE+EFWFALIK F+TDAG V ++ Sbjct: 124 PAIICLLILLGFNLLTVKLFGEMEFWFALIKVITILLLIGVGIVLLIIGFQTDAGPVTVT 183 Query: 227 NIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIPLRILF 286 N+W+HGG+FP+G++GFLLSFQMV+FA+VGVELVGVSAAETANP+K+IPSAINKIPLRILF Sbjct: 184 NLWSHGGLFPHGVTGFLLSFQMVIFAYVGVELVGVSAAETANPQKNIPSAINKIPLRILF 243 Query: 287 FYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNSGMFST 346 FYVGAI LL IN WTEL+ +ESPFVKTF L+GIP+AAG+INFVVLTSAASACNSGMFST Sbjct: 244 FYVGAIFVLLCINPWTELSASESPFVKTFGLIGIPVAAGLINFVVLTSAASACNSGMFST 303 Query: 347 SRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIVTTISA 406 SRILYNLS +Q P+ F +LNK+ VPSNAL VST+V+SVGALLSKLIPE AFGIVTTISA Sbjct: 304 SRILYNLSHQKQGPSSFGRLNKHAVPSNALFVSTIVVSVGALLSKLIPEQAFGIVTTISA 363 Query: 407 ICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXXXEETR 466 ICFIWVW +ILICHL+YKKTKPEL A S FKAP TPF+N V + TR Sbjct: 364 ICFIWVWSIILICHLKYKKTKPELHAASTFKAPFTPFVNICVLVLFAAILVIMLFADATR 423 Query: 467 PAXXXXXXXXXXXXXXYSTNRRK 489 PA Y+ +R+ Sbjct: 424 PALLLTPVWFGFLLLIYARKKRR 446 >A8FJ79.1 A8FJ79_BACP2 APC family amino acid-polyamine-organocation transporter Length = 448 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 298/443 (67%), Positives = 336/443 (75%) Query: 47 QELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMRALGE 106 QELKRDL NRHVQ KAIQLAGPSIIFAY IVG+A+FFVMRALGE Sbjct: 4 QELKRDLSNRHVQLIAIGGTIGTGLFLGSGKAIQLAGPSIIFAYFIVGMAIFFVMRALGE 63 Query: 107 LLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWFDIPQWV 166 LLLSK GYQS TDIAEDYLGP A+FVTGWTYWFCWIMTAMAD+IAVGVYVQYWFDIPQW+ Sbjct: 64 LLLSKTGYQSLTDIAEDYLGPWASFVTGWTYWFCWIMTAMADVIAVGVYVQYWFDIPQWI 123 Query: 167 PAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAGTVALS 226 PA+ TVK FGE+EFWFALIK F+TDAG V ++ Sbjct: 124 PAIICLLILLGFNLLTVKLFGEMEFWFALIKVITILLLIGVGIVLLIIGFQTDAGPVTVT 183 Query: 227 NIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIPLRILF 286 N+W+HGG+FP+G++GFLLSFQMV+FA+VGVELVGVSAAETANP+K+IPSAINKIPLRILF Sbjct: 184 NLWSHGGLFPHGVTGFLLSFQMVIFAYVGVELVGVSAAETANPQKNIPSAINKIPLRILF 243 Query: 287 FYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNSGMFST 346 FYVGAI LL IN WTEL+ +ESPFVKTF L+GIP+AAG+INFVVLTSAASACNSGMFST Sbjct: 244 FYVGAIFVLLCINPWTELSASESPFVKTFGLIGIPVAAGLINFVVLTSAASACNSGMFST 303 Query: 347 SRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIVTTISA 406 SRILYNLS +Q P+ F +LNK+ VPSNAL VST+V+SVGALLSKLIPE AFGIVTTISA Sbjct: 304 SRILYNLSHQKQGPSSFGRLNKHAVPSNALFVSTIVVSVGALLSKLIPEQAFGIVTTISA 363 Query: 407 ICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXXXEETR 466 ICFIWVW +ILICHL+YKKTKPEL A S FKAP TPF+N V + TR Sbjct: 364 ICFIWVWSIILICHLKYKKTKPELHAASTFKAPFTPFVNICVLVLFAAILVIMLFADATR 423 Query: 467 PAXXXXXXXXXXXXXXYSTNRRK 489 PA Y+ +R+ Sbjct: 424 PALLLTPVWFGFLLLIYARKKRR 446 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,418,332,571 Number of extensions: 84382951 Number of successful extensions: 302534 Number of sequences better than 1.0e-05: 5559 Number of HSP's gapped: 291928 Number of HSP's successfully gapped: 5813 Length of query: 503 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 363 Effective length of database: 1,741,754,103 Effective search space: 632256739389 Effective search space used: 632256739389 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)