BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0048.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BBD6.1 Q2BBD6_9BACI Sensor protein EC=2.7.13.3 297 9e-79 B1Q6Q2.1 B1Q6Q2_CLOBO Sensor protein EC=2.7.13.3 257 7e-67 C3L1T6.1 C3L1T6_CLOB6 Sensor histidine kinase EC=2.7.3.- 250 1e-64 B1QLV4.1 B1QLV4_CLOBO Sensor protein EC=2.7.13.3 250 1e-64 A7FS37.1 A7FS37_CLOB1 Sensor protein EC=2.7.13.3 250 1e-64 >Q2BBD6.1 Q2BBD6_9BACI Sensor protein EC=2.7.13.3 Length = 297 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 140/270 (51%), Positives = 188/270 (69%) Query: 18 RMTAQLRRYNKGTTGKKIDVSLFDQRLEALAGEINRQSDLVVDAEARRRRTENELRQAIA 77 R QLR N+ T KK+D+S D+ E LA EIN Q D AEA +R TENEL+QAI+ Sbjct: 28 RTARQLRESNQNKTAKKVDISYHDRHFEELAKEINNQIDQTKQAEAVKRSTENELKQAIS 87 Query: 78 NISHDIRTPLTSIFGYIQLLEAEPITSQEKHEYLTIVKNRTKRLQALLNDFFELSLIESS 137 +ISHDIRTP+TSI GYIQ LE++ ++ + K EY+ +KN RL+ LL DFFELS+IE + Sbjct: 88 HISHDIRTPMTSILGYIQFLESDELSPELKKEYIATIKNSAGRLKTLLEDFFELSIIEQT 147 Query: 138 DYQLKTERIEMNVLLSDILVGFYDRFNERNITPDIRLPQEAVAIYADESAVRRVVENLLI 197 DY +K ER+ N L++D L+GFY+ F +R I PDI +P + I AD SAV+RVVENL++ Sbjct: 148 DYPMKLERVRANDLIADALLGFYEEFKKRTIEPDIHIPDHEIMINADASAVKRVVENLVV 207 Query: 198 NTVKHAAGHVEICFEHREKTAELRIVNEAKELTDIDVRLLFDRFYTVDRTRSAQGSGLGL 257 N ++++ G+V I R+ LRI N +L++ DV +FDRFY D+TR+ +G+GLGL Sbjct: 208 NAIRYSTGNVSIRLYERDAAVILRISNTVDKLSEQDVHYMFDRFYKADQTRTGKGTGLGL 267 Query: 258 SIAKSLMDKMNGTLTAELHGGNLTMTCRWK 287 IAKSLM+KMNG ++AEL G L M C WK Sbjct: 268 PIAKSLMEKMNGKISAELKGNQLAMVCEWK 297 >B1Q6Q2.1 B1Q6Q2_CLOBO Sensor protein EC=2.7.13.3 Length = 301 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 121/272 (44%), Positives = 187/272 (68%), Gaps = 2/272 (0%) Query: 19 MTAQLRRYNKGTTGKKIDVSLFDQRLEALAGEINRQSDLVVDAEARRRRTENELRQAIAN 78 +T QL YN + KKID +LFD+ +E LA IN+ D+ + ++ +++R E E+R+ IAN Sbjct: 29 ITIQLNEYNNLKSLKKIDATLFDKEIENLAYSINKHIDINIQSQIKQKRLEEEIRKNIAN 88 Query: 79 ISHDIRTPLTSIFGYIQLLEAEPITSQEKHEYLTIVKNRTKRLQALLNDFFELSLIESSD 138 ISHD+RTPLTSI GYIQ+++ ++ +++ EY+ I + R K LQ LL+DFFELS+IES D Sbjct: 89 ISHDLRTPLTSIIGYIQMIKKGNLSKEKQIEYIDIAERRAKDLQNLLSDFFELSVIESPD 148 Query: 139 YQLKTERIEMNVLLSDILVGFYDRFNERNITPDIRLPQEAVAIYADESAVRRVVENLLIN 198 Y ++ ++I +N +L +++V FY F ++NITP I LP+E + + +E A++RV++NL++N Sbjct: 149 YYIELQKININNILCEVIVSFYSSFVDKNITPKIDLPKENIMVIGNEGAIKRVLQNLIVN 208 Query: 199 TVKHAAGHVEICFEHREKTAELRIVNEAKELTDIDVRLLFDRFYTVD--RTRSAQGSGLG 256 +KH+ V I F+ A L +N ++ + D+ L+F+RFY D RT +GLG Sbjct: 209 MIKHSKEDVYISFKKENNKAVLATINRCDDIKEEDIDLIFNRFYKKDDARTNKNGSTGLG 268 Query: 257 LSIAKSLMDKMNGTLTAELHGGNLTMTCRWKL 288 LSI+KSLM+KMNG + AE+HG L + C+W L Sbjct: 269 LSISKSLMEKMNGEIYAEVHGDLLHIFCKWGL 300 >C3L1T6.1 C3L1T6_CLOB6 Sensor histidine kinase EC=2.7.3.- Length = 301 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/272 (43%), Positives = 183/272 (67%), Gaps = 2/272 (0%) Query: 19 MTAQLRRYNKGTTGKKIDVSLFDQRLEALAGEINRQSDLVVDAEARRRRTENELRQAIAN 78 +T QL YN + KKID +LFD+ +E LA IN+ D+ + ++ +++R E E+R+ IAN Sbjct: 29 ITIQLNDYNNLKSLKKIDATLFDKEIENLAYSINKHIDINIQSQIKQKRLEEEIRKNIAN 88 Query: 79 ISHDIRTPLTSIFGYIQLLEAEPITSQEKHEYLTIVKNRTKRLQALLNDFFELSLIESSD 138 ISHD+RTPLTSI GYIQ+++ ++ +++ EY+ I + R K LQ LL+DFFELS+IES D Sbjct: 89 ISHDLRTPLTSIIGYIQMIKKGNLSKEKQIEYIDIAERRAKDLQNLLSDFFELSVIESPD 148 Query: 139 YQLKTERIEMNVLLSDILVGFYDRFNERNITPDIRLPQEAVAIYADESAVRRVVENLLIN 198 Y ++ ++I +N +L +++V FY F ++NITP I LP+E + + +E A++RV++NL++N Sbjct: 149 YCIELQKININNILCEVIVSFYSSFVDKNITPKIDLPKENIMVIGNEGAIKRVLQNLIVN 208 Query: 199 TVKHAAGHVEICFEHREKTAELRIVNEAKELTDIDVRLLFDRFYTVD--RTRSAQGSGLG 256 +KH+ V I + A L +N+ +T+ D+ L+F+RFY D RT +GLG Sbjct: 209 MIKHSKRDVYISLKKENNKAVLTAINKCDNITEGDIELIFNRFYKKDNARTNKNGSTGLG 268 Query: 257 LSIAKSLMDKMNGTLTAELHGGNLTMTCRWKL 288 L I+KSLM KMNG + AE+H L + C W L Sbjct: 269 LFISKSLMKKMNGKIYAEVHENLLHIFCEWNL 300 >B1QLV4.1 B1QLV4_CLOBO Sensor protein EC=2.7.13.3 Length = 301 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/272 (43%), Positives = 183/272 (67%), Gaps = 2/272 (0%) Query: 19 MTAQLRRYNKGTTGKKIDVSLFDQRLEALAGEINRQSDLVVDAEARRRRTENELRQAIAN 78 +T QL YN + KKID +LFD+ +E LA IN+ D+ + ++ +++R E E+R+ IAN Sbjct: 29 ITIQLNDYNNLKSLKKIDATLFDKEIENLAYSINKHIDINIQSQIKQKRLEEEIRKNIAN 88 Query: 79 ISHDIRTPLTSIFGYIQLLEAEPITSQEKHEYLTIVKNRTKRLQALLNDFFELSLIESSD 138 ISHD+RTPLTSI GYIQ+++ ++ +++ EY+ I + R K LQ LL+DFFELS+IES D Sbjct: 89 ISHDLRTPLTSIIGYIQMIKKGNLSKEKQIEYIDIAERRAKDLQNLLSDFFELSVIESPD 148 Query: 139 YQLKTERIEMNVLLSDILVGFYDRFNERNITPDIRLPQEAVAIYADESAVRRVVENLLIN 198 Y ++ ++I +N +L +++V FY F ++NITP I LP+E + + +E A++RV++NL++N Sbjct: 149 YCIELQKININNILCEVIVSFYSSFVDKNITPKIDLPKENIMVIGNEGAIKRVLQNLIVN 208 Query: 199 TVKHAAGHVEICFEHREKTAELRIVNEAKELTDIDVRLLFDRFYTVD--RTRSAQGSGLG 256 +KH+ V I + A L +N+ +T+ D+ L+F+RFY D RT +GLG Sbjct: 209 MIKHSKRDVYISLKKENNKAVLTAINKCDNITEGDIELIFNRFYKKDNARTNKNGSTGLG 268 Query: 257 LSIAKSLMDKMNGTLTAELHGGNLTMTCRWKL 288 L I+KSLM KMNG + AE+H L + C W L Sbjct: 269 LFISKSLMKKMNGKIYAEVHENLLHIFCEWNL 300 >A7FS37.1 A7FS37_CLOB1 Sensor protein EC=2.7.13.3 Length = 301 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/272 (42%), Positives = 187/272 (68%), Gaps = 2/272 (0%) Query: 19 MTAQLRRYNKGTTGKKIDVSLFDQRLEALAGEINRQSDLVVDAEARRRRTENELRQAIAN 78 +T QL YN + KKID +LFD+ +E LA IN+ D+ + ++ +++R E E+R+ IAN Sbjct: 29 ITIQLNEYNDLKSLKKIDSTLFDKEIENLAYSINKHIDINIQSQIKQKRLEEEIRKNIAN 88 Query: 79 ISHDIRTPLTSIFGYIQLLEAEPITSQEKHEYLTIVKNRTKRLQALLNDFFELSLIESSD 138 +SHD+RTPLTSI GYIQ+++ ++ +++ EY+ I + R K LQ LL++FFELS+I S D Sbjct: 89 VSHDLRTPLTSIIGYIQMIKKGNLSKEKQIEYIDIAERRAKDLQNLLSNFFELSIIGSPD 148 Query: 139 YQLKTERIEMNVLLSDILVGFYDRFNERNITPDIRLPQEAVAIYADESAVRRVVENLLIN 198 Y ++ ++I +N +L +++ FY F +++ITP I LP+E + + +E A++RV++NL++N Sbjct: 149 YYIELQKININNILCEVIASFYSSFVDKDITPKIDLPKENIIVIGNEGAIKRVLQNLIVN 208 Query: 199 TVKHAAGHVEICFEHREKTAELRIVNEAKELTDIDVRLLFDRFYTVD--RTRSAQGSGLG 256 +KH+ V I F+ A L +N+ ++T+ ++ L+F+RFY D RT +GLG Sbjct: 209 IIKHSKRDVYISFKKENNKAVLATINKCNDITEDNIELIFNRFYKKDDARTNKNGSTGLG 268 Query: 257 LSIAKSLMDKMNGTLTAELHGGNLTMTCRWKL 288 LSI+KSLM+KMNG + AE+HG L + C+W L Sbjct: 269 LSISKSLMEKMNGEIYAEVHGDLLHIFCKWNL 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,440,547,478 Number of extensions: 53948139 Number of successful extensions: 258492 Number of sequences better than 1.0e-05: 21701 Number of HSP's gapped: 230250 Number of HSP's successfully gapped: 21763 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)