BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0047.p (253 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BBD5.1 Q2BBD5_9BACI Putative uncharacterized protein 143 1e-32 C0BXY8.1 C0BXY8_9CLOT Putative uncharacterized protein 64 1e-08 B6FIZ5.1 B6FIZ5_9CLOT Putative uncharacterized protein 62 4e-08 Q5KTU9.1 Q5KTU9_STAAU Putative uncharacterized protein 61 7e-08 B0NCK9.1 B0NCK9_EUBSP Putative uncharacterized protein 61 1e-07 >Q2BBD5.1 Q2BBD5_9BACI Putative uncharacterized protein Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 138/223 (61%), Gaps = 6/223 (2%) Query: 32 YPLLYYFDNKSSGQPQFTGAEFLIRFMASNGYMIKFGVAALAGFFIASEYATGVMKTIAS 91 +PLL FDN +SG P + + + + ++K + LAGFFI SEY+ G MK+I S Sbjct: 9 FPLLE-FDNGASGLPAVSD-YYKESILGPHANIVKLIPSILAGFFITSEYSMGTMKSIVS 66 Query: 92 SGNDRGRLFTAKLIGFSVGAMAVSIVFPVVSTTEVSLLSGFGHLPEGVDAFFIPRALGLT 151 SG R +++AKLI FS+GA+ +S++ P++ T ++ GF +PE ++++ + +GL Sbjct: 67 SGKSRLSIYSAKLIVFSIGAVIISLILPIMMTGASAVYFGFDGMPE--LSYYL-QTIGLI 123 Query: 152 LLYTAGYAAIGALFTAIFTDSGKTIGFSMIFFLMIDLILGGLGKYIPFFTTVYDYSIFKL 211 +LY A +A+I A+F+ +FTDSGKTIGF ++FF+ D L L +PFF + ++S+FKL Sbjct: 124 ILYGAAFASITAIFSILFTDSGKTIGFLLMFFIFADWPLQVLAAKVPFFEPILNHSVFKL 183 Query: 212 MGDIS-KPSIGSGDXXXXXXXXXXTIVAAGLLGILVFRRKEIK 253 + DIS S+ S D T + +G+ +F+RKEIK Sbjct: 184 IYDISIVNSLNSSDLFFIIVIPILTFLLFWGIGVYIFKRKEIK 226 >C0BXY8.1 C0BXY8_9CLOT Putative uncharacterized protein Length = 281 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 32/283 (11%) Query: 1 MYNLIRSELFKLRKDRSFRXXXXXXXXXXXXYPLLYYFDNKSSGQPQFTGAEFLIRFMAS 60 M NL+R++ +KL K + F L F K +G E + + Sbjct: 1 MRNLLRNDFYKLGKAKYFWVCLIVTVVLAAASVFLLDFTYKIAGDQMSAQMEQQQKALDD 60 Query: 61 NGYMIK--------------------------FGVAALAGFFIASEYATGVMKTIASSGN 94 NG I +A L F+ SE+ G +K IAS Sbjct: 61 NGVNITTEGVPASYDELSASGQLLSFFAGNTTLLLAVLVSLFVGSEFNNGTIKNIASRNY 120 Query: 95 DRGRLFTAKLIGFSVGAMAVSIVFPVVSTTEVSLLSGFGHLPEGVDAFFIPRALGLTLLY 154 RG+++ +KLI + + ++++ VST S L GFG + G F +A G+ LL Sbjct: 121 SRGKIYLSKLIVCIITGVVFTLIYAAVSTAVSSALWGFGDISAGYWPEFF-KAAGIELLL 179 Query: 155 TAGYAAIGALFTAIFTDSGKTIGFSMIFFLMIDLI--LGG--LGKYIPFFTTVYDYSIFK 210 + + +I +F+ + +G ++ ++ F I L+ LG L K T+ +Y I Sbjct: 180 GSAFVSIFVMFSMLIRQNGGSLAANICFLEFISLLVMLGEMLLKKLFHITATLSNYLIDT 239 Query: 211 LMGDISKPSIGSGDXXXXXXXXXXTIVAAGLLGILVFRRKEIK 253 M +S + + AA ++GI+ F++++IK Sbjct: 240 NMTAVS-AGLTRATAIRGVTVAVCFLAAAAIIGIVSFQKRDIK 281 >B6FIZ5.1 B6FIZ5_9CLOT Putative uncharacterized protein Length = 281 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 125/293 (42%), Gaps = 52/293 (17%) Query: 1 MYNLIRSELFKLRKDRSFRXXXXXXXXXXXXYPLLYYFDNK------------------- 41 M +LIRS+ +KLRK +SF L+ F K Sbjct: 1 MKSLIRSDFYKLRKAKSFWVCMILAVALAVFSVLIMDFSVKLMDKVPQQAAQEEAALEES 60 Query: 42 -----SSGQPQFTGAEFLIRFMASNGYMIKFG------VAALAGFFIASEYATGVMKTIA 90 + G P + ASN +++F ++ F+ E++ G +K +A Sbjct: 61 GLNISTDGIPMSSA-----DLNASNMLLMQFAGTTTILISIFVSLFVGGEFSHGTIKNLA 115 Query: 91 SSGNDRGRLFTAKLIGFSVGAMAVSIVFPVVSTTEVSLLSGFGHLPEGVDAFFIPRA--- 147 S + R +++ +K+I + A+ +++++ VV+T + L GFG VD+ F+ A Sbjct: 116 SKNHTRTQIYLSKIIVSVIAAIVMTLLYAVVATGLGTALWGFGK----VDSSFVANACKG 171 Query: 148 LGLTLLYTAGYAAIGALFTAIFTDSGKTIGFSMIFFLMIDLILGGLGKYIPFFTTVYDYS 207 +G+ L + + A+ +F+ + SG I ++ F I LI+ G+ I ++D S Sbjct: 172 IGIEFLLVSAFTAVFVMFSMLIRQSGGAIAANIFFLEFISLIV-MFGEMI--INKIFDTS 228 Query: 208 IF--KLMGDISKPSIGSGDXXXXXXXXXXTI-----VAAGLLGILVFRRKEIK 253 I + D + I + D + + A +G++ FR+++IK Sbjct: 229 ITLSNYLIDTNMTQIATSDITGKLAARSICVAFGFFIVATAIGLISFRKRDIK 281 >Q5KTU9.1 Q5KTU9_STAAU Putative uncharacterized protein Length = 255 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 14/261 (5%) Query: 1 MYNLIRSELFKLRKDRSFRXXXXXXXXXXXXYPLLYYFDNKSSGQPQFTGAEFLIRFMAS 60 M NLI+SE++KL ++++F +L D G A L A Sbjct: 1 MINLIQSEIYKLVRNKTFGYLMMASFILSFVLHILIIVDWWQLGGTSLDIAG-LGELNAL 59 Query: 61 NGYMI----KFGVAALAGFFIASEYA-TGVMKTIASSGNDRGRLFTAKLIGFSVGAMAVS 115 N Y++ V+ L F+I++E++ G +K SG R ++F +K F+V ++ +S Sbjct: 60 NIYLLPLFFNILVSTLGAFYISNEFSQNGQIKNPIISGKKRYQIFFSKYFVFTVSSIVIS 119 Query: 116 IVFPVVSTTEVSLLSGFGHLPEGVDAFFIPRALGLTLLYTAGYAAIGALFTAIFTDSGKT 175 ++ P+++ + G G + ++ A+ L + + AI L I DSGKT Sbjct: 120 VLLPILTGIISVYILGHGEIFTTAKIIYLGIAIILFIFQFLSFTAIVFLIAMITGDSGKT 179 Query: 176 IGFSM---IFFLMIDLILGGLGKYIPFFTTVYDYSIFKLMGDISKPSIGSGDXXXXXXXX 232 I F++ IF L+++ + G +Y ++F + K +I S + Sbjct: 180 ILFTLLLTIFMLLVEKLSSG-----SIVEPLYHQTVFHQYSLVLKFNITSAEVIHSIFIG 234 Query: 233 XXTIVAAGLLGILVFRRKEIK 253 + L I V R+EIK Sbjct: 235 SIWFIILLLCNIFVMNRREIK 255 >B0NCK9.1 B0NCK9_EUBSP Putative uncharacterized protein Length = 281 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 38/286 (13%) Query: 1 MYNLIRSELFKLRKDRSFRXXXXXXXXXXXXYPLLYYFDNKSSGQPQFTGAEFLIRFMAS 60 M NL++S+ +KL K R F L F K +G+ E + M Sbjct: 1 MLNLLKSDFYKLGKARYFWVCLILTAALAAGTVFLMDFAYKMAGEQMTQQVEQKQQAMDE 60 Query: 61 NG-------------------YMIKF-------GVAALAGFFIASEYATGVMKTIASSGN 94 NG M+ F +A L F+ SE+ G +K IAS Sbjct: 61 NGINVTTEGVPASREELSASRQMVTFFAGNTTLILAVLISLFVGSEFNHGTIKNIASKNY 120 Query: 95 DRGRLFTAKLIGFSVGAMAVSIVFPVVSTTEVSLLSGFGHLPEGVDAFFIPRAL---GLT 151 R +++ +KL + + + ++ VS ++L GFG V+A F P AL GL Sbjct: 121 GRSQIYASKLAAGVLCGILFTFIYAAVSMAAATILWGFGD----VNAGFWPDALKSVGLE 176 Query: 152 LLYTAGYAAIGALFTAIFTDSGKTIGFSMIFFLMIDLILGGLGKYIPFFTTVYDYSIFKL 211 LL T+ + +I +F+ + +G ++ ++ F + LI+ LG+ + + + + Sbjct: 177 LLLTSAFVSIFVMFSMLIRQNGGSLAANICFLEFVSLIV-MLGEMLIKKISGKEIILSNY 235 Query: 212 MGDISKPSIGSGDXXXXXXXXXXT----IVAAGLLGILVFRRKEIK 253 + D + +I +G +AA L+G+L F++++IK Sbjct: 236 LIDTNMNAITAGLNKAIAVRSLCVAFGFFLAAMLIGMLSFQKRDIK 281 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.145 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,266,273,383 Number of extensions: 49370678 Number of successful extensions: 206673 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 206688 Number of HSP's successfully gapped: 8 Length of query: 253 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 120 Effective length of database: 1,807,701,208 Effective search space: 216924144960 Effective search space used: 216924144960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)