BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0045.p (230 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7FS33.1 A7FS33_CLOB1 DNA-binding response regulator 244 4e-63 A5HZW9.1 A5HZW9_CLOBH DNA-binding response regulator 244 4e-63 C1FUK8.1 C1FUK8_CLOBJ DNA-binding response regulator 242 2e-62 B1Q6P8.1 B1Q6P8_CLOBO DNA-binding response regulator 241 5e-62 A7GBH4.1 A7GBH4_CLOBL DNA-binding response regulator 241 5e-62 >A7FS33.1 A7FS33_CLOB1 DNA-binding response regulator Length = 230 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 155/228 (67%) Query: 1 MNNSIHILVAEXXXXXXXXXXXXXRKSGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPG 60 M+ I ILV E R+S Y+ + A+SGTEAL+YL++ W MVLLDLMLPG Sbjct: 1 MSEDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPG 60 Query: 61 MTGEELLQWXXXXXXXXXXXXSAKGEQQTKVSALRGGADDFITKPFDIEEVSARIDSHLR 120 M G+ELL SAK E+ K+ LR GADD+ITKPFDI+EVSARIDSHLR Sbjct: 61 MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR 120 Query: 121 RYAQIAPPAVPSVLQHNGLVLDPDSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKAN 180 RY + + + ++L++ + L+ D++ V ++ LT RE++I+ LL+ PKKVFTKAN Sbjct: 121 RYKEFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKAN 180 Query: 181 LYESVWDEPYYGDDNTVNVHMSNLRSKLAKAAPGSEFIETVWGMGYRL 228 L+ESVW Y DDNT+NVH+SNLR+KL+KA +E+I+T+WG+GY+L Sbjct: 181 LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKL 228 >A5HZW9.1 A5HZW9_CLOBH DNA-binding response regulator Length = 230 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 155/228 (67%) Query: 1 MNNSIHILVAEXXXXXXXXXXXXXRKSGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPG 60 M+ I ILV E R+S Y+ + A+SGTEAL+YL++ W MVLLDLMLPG Sbjct: 1 MSEDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPG 60 Query: 61 MTGEELLQWXXXXXXXXXXXXSAKGEQQTKVSALRGGADDFITKPFDIEEVSARIDSHLR 120 M G+ELL SAK E+ K+ LR GADD+ITKPFDI+EVSARIDSHLR Sbjct: 61 MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR 120 Query: 121 RYAQIAPPAVPSVLQHNGLVLDPDSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKAN 180 RY + + + ++L++ + L+ D++ V ++ LT RE++I+ LL+ PKKVFTKAN Sbjct: 121 RYKEFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKAN 180 Query: 181 LYESVWDEPYYGDDNTVNVHMSNLRSKLAKAAPGSEFIETVWGMGYRL 228 L+ESVW Y DDNT+NVH+SNLR+KL+KA +E+I+T+WG+GY+L Sbjct: 181 LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKL 228 >C1FUK8.1 C1FUK8_CLOBJ DNA-binding response regulator Length = 230 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 154/228 (67%) Query: 1 MNNSIHILVAEXXXXXXXXXXXXXRKSGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPG 60 MN I ILV E R+S Y+ + A+SGTEAL+YL++ W MVLLDLMLPG Sbjct: 1 MNKDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPG 60 Query: 61 MTGEELLQWXXXXXXXXXXXXSAKGEQQTKVSALRGGADDFITKPFDIEEVSARIDSHLR 120 M G+ELL SAK E+ K+ LR GADD+ITKPFDI+EVSARIDSHLR Sbjct: 61 MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR 120 Query: 121 RYAQIAPPAVPSVLQHNGLVLDPDSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKAN 180 RY + + ++L++ + L+ D++ V ++ LT RE++I+ LL+ PKKVFTK+N Sbjct: 121 RYKEFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSN 180 Query: 181 LYESVWDEPYYGDDNTVNVHMSNLRSKLAKAAPGSEFIETVWGMGYRL 228 L+ESVW Y DDNT+NVH+SNLR+KL+KA +E+I+T+WG+GY+L Sbjct: 181 LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228 >B1Q6P8.1 B1Q6P8_CLOBO DNA-binding response regulator Length = 230 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 113/228 (49%), Positives = 154/228 (67%) Query: 1 MNNSIHILVAEXXXXXXXXXXXXXRKSGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPG 60 M+ I ILV E R+S Y+ + A+SGTEAL+YL++ W MVLLDLMLPG Sbjct: 1 MSQDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPG 60 Query: 61 MTGEELLQWXXXXXXXXXXXXSAKGEQQTKVSALRGGADDFITKPFDIEEVSARIDSHLR 120 M G+ELL SAK E+ K+ LR GADD+ITKPFDI+EVSARIDSHLR Sbjct: 61 MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR 120 Query: 121 RYAQIAPPAVPSVLQHNGLVLDPDSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKAN 180 RY + + ++L++ + L+ D++ V ++ LT RE++I+ LL+ PKKVFTK+N Sbjct: 121 RYKEFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSN 180 Query: 181 LYESVWDEPYYGDDNTVNVHMSNLRSKLAKAAPGSEFIETVWGMGYRL 228 L+ESVW Y DDNT+NVH+SNLR+KL+KA +E+I+T+WG+GY+L Sbjct: 181 LFESVWSSKYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228 >A7GBH4.1 A7GBH4_CLOBL DNA-binding response regulator Length = 230 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 113/228 (49%), Positives = 154/228 (67%) Query: 1 MNNSIHILVAEXXXXXXXXXXXXXRKSGYVPQPAFSGTEALLYLEQRQWSMVLLDLMLPG 60 M+ I ILV E R+S Y+ + A+SGTEAL+YL++ W MVLLDLMLPG Sbjct: 1 MSQDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPG 60 Query: 61 MTGEELLQWXXXXXXXXXXXXSAKGEQQTKVSALRGGADDFITKPFDIEEVSARIDSHLR 120 M G+ELL SAK E+ K+ LR GADD+ITKPFDI+EVSARIDSHLR Sbjct: 61 MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR 120 Query: 121 RYAQIAPPAVPSVLQHNGLVLDPDSKTVMAEGAEVALTAREYEIVALLLSAPKKVFTKAN 180 RY + + ++L++ + L+ D++ V ++ LT RE++I+ LL+ PKKVFTK+N Sbjct: 121 RYKEFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSN 180 Query: 181 LYESVWDEPYYGDDNTVNVHMSNLRSKLAKAAPGSEFIETVWGMGYRL 228 L+ESVW Y DDNT+NVH+SNLR+KL+KA +E+I+T+WG+GY+L Sbjct: 181 LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,227,292,754 Number of extensions: 43487491 Number of successful extensions: 173245 Number of sequences better than 1.0e-05: 17207 Number of HSP's gapped: 152107 Number of HSP's successfully gapped: 17209 Length of query: 230 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 99 Effective length of database: 1,826,543,238 Effective search space: 180827780562 Effective search space used: 180827780562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)