BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0043.p (532 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KQ52.1 A9KQ52_CLOPH Putative uncharacterized protein 300 2e-79 C2N867.1 C2N867_BACCE ABC transporter permease protein 281 1e-73 B7ILZ8.1 B7ILZ8_BACC2 Putative uncharacterized protein 275 6e-72 Q3EYF8.1 Q3EYF8_BACTI ABC transporter permease protein 275 8e-72 A9VM53.1 A9VM53_BACWK Putative uncharacterized protein 275 1e-71 >A9KQ52.1 A9KQ52_CLOPH Putative uncharacterized protein Length = 528 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 183/537 (34%), Positives = 308/537 (57%), Gaps = 14/537 (2%) Query: 1 MIDIWRLTKIQLLSSFGLNKALHTKDVKERRKALLLSTGILAGVLMIAAASFGYSFMMAL 60 M +W LT++QL S+F L+ K K +K + ++T ++ G L+ A S YSF+MA+ Sbjct: 1 MRQVWTLTRMQLGSAFDF---LNMKRSKNLKKNISVTTILVLGFLLFAFLSGTYSFIMAI 57 Query: 61 AFEQMGRMDLLLAIMMTVTSLVGFFTTVYKASGVLFSYKDYDLVMSLPIKTSHVVASRIL 120 A + M +D+L + M VT L+ T++YK GVLF +KDYD+VMSLP+K+ VVASR++ Sbjct: 58 ALKSMDLLDVLPGLFMAVTCLMILVTSIYKVKGVLFGFKDYDIVMSLPMKSWVVVASRLM 117 Query: 121 QLYVLNLFFTVMVMLPAGAVYAVKVNPGAXXXXXXXXXXXXXXXXXXXAATVIGSGISWI 180 LY++N+ F + +++P +Y V A+++G ++ I Sbjct: 118 LLYLINMVFVLAILVPNYIIYGVMAKASPVFYVLSMVSLLFIPIIPIIIASILGVILAVI 177 Query: 181 SSRFKASRMISLVLTFAVMIALMVGSFGMNGNEQALADMGTGLAEMIFKLYPLAALYVDA 240 S+ FK S I +L FA + +++ SF M Q +A+ GT + + + +YPLA Y+ Sbjct: 178 SAGFKHSNAIHTILMFAATLLVILLSFQMQSENQ-IAEFGTLIRDKMVVVYPLAGWYLKG 236 Query: 241 VCSYRMGALLLFIALSVLSFMIFAAVLGTRYKAIHTGLTTYHASSKYIMKPLKVSSPFRA 300 + + + F+ +S+L+ ++F+ ++G +K ++T ++ +SKY +K LK S +A Sbjct: 237 IIQSDILSYTAFLVVSILALIVFSIIVGRYFKWMNTVISARRTTSKYKVKELKTSGQLKA 296 Query: 301 LYKKELRRYFSSSIYVLNTSMGMIXXXXXXXXXXXXXPEKLGELIEIPQLSHYLGTVAPI 360 LY KE +RYFS +IY+LNTS+G++ +++ +++ IP+ + L + P Sbjct: 297 LYLKEAKRYFSCTIYLLNTSIGLVLMLVGVIALVFLKSDQIEQILNIPEAAGMLKEMVPY 356 Query: 361 IVSLFVTLSCTTSSAISLEGNRLWILKSSPVSKQSILLSKVAVNLTITLPXXXXXXXXXM 420 ++S V+L T+S+ISLEG +WILKS+PV ++IL +K++++L++T+P Sbjct: 357 LMSFMVSLVAITASSISLEGKNIWILKSAPVPAKTILAAKISLSLSMTIPASILTSLLAG 416 Query: 421 ISLRMGWVEGLLLLVIPSLYACYSAMLGVIINLKLPKLEWTSEVAVVKQSAAVLVSMFTX 480 I L+MG ++ LL L +P Y +A+LG++INLKLP LEW +E VVKQSAA SM Sbjct: 417 IGLKMGVLDFLLTLALPISYCYLTAVLGLVINLKLPMLEWKNETVVVKQSAA---SMMGS 473 Query: 481 XXXXXXXXXXXXXXAHVNG-NLMLSGVG----MIMIAGCIAMFRYIQTKGERLVQKL 532 VNG N+M G G +++I+G + + Y+ G +L+ +L Sbjct: 474 LGGFLTVGIPIALLFMVNGINVMALGYGTVVVVLLISGILQV--YLNKNGAKLIARL 528 >C2N867.1 C2N867_BACCE ABC transporter permease protein Length = 512 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 275/474 (58%), Gaps = 18/474 (3%) Query: 12 LLSSFGLNKALHTKDVKERRKALLLSTGI-LAGV-LMIAAASFGYSFMMALAFEQMGRMD 69 +++ GLN + KD ++++ +LL+ I L GV LM+ + Y + ++G + Sbjct: 1 MITQLGLNTFKYEKDKRKKQNKILLTVSIALVGVMLMLYCGASAYGLI------KIGISE 54 Query: 70 LLLAIMMTVTSLVGFFTTVYKASGVLFSYKDYDLVMSLPIKTSHVVASRILQLYVLNLFF 129 ++ + ++S++ F T++KA+G +F++KDYD +MSLPI+ S V+ASR L LY+LN F Sbjct: 55 IIPVYALVISSVLTLFFTIFKANGEIFAFKDYDFLMSLPIRVSTVIASRFLYLYLLNTMF 114 Query: 130 TVMVMLPAGAVYAVKVNPGAXXXXXXXXXXXXXXXXXXXAATVIGSGISWISSRFKASRM 189 ++++MLP G VY + NP A + G+ I+ I+S+FK + Sbjct: 115 SIIIMLPMGVVYCIHENPSVSFYFMWFISMFIASLIPTTIAAIFGASITAIASKFKNTNK 174 Query: 190 ISLVLTFAVMIALMVGSFGM-NGNEQ-ALADM---GTGLAEMIFKLYPLAALYVDAVCSY 244 I+ +L+F V+I GSF + NGN Q +L DM G ++E + K+YPLA ++ A+ + Sbjct: 175 ITTILSFIVIITF--GSFMLKNGNAQYSLNDMNGIGAIVSEQLTKVYPLANMFQKAIVNA 232 Query: 245 RMGALLLFIALSVLSFMIFAAVLGTRYKAIHTGLTTYHASSKYIMKPLKVSSPFRALYKK 304 M A +LF+ +SV+ + +F +L +YK I+TG+TTYH S Y + +K S ALYKK Sbjct: 233 DMVAFILFVGISVIWYYLFVKILSLKYKQINTGITTYHMLSNYEINSMKKESVLVALYKK 292 Query: 305 ELRRYFSSSIYVLNTSMGMIXXXXXXXXXXXXXPEKLGELIEIPQLSHYLGTVAPIIVSL 364 EL+R+FSS++YV+N+ MG++ P +LI P + L +AP ++ Sbjct: 293 ELKRFFSSTVYVINSGMGVVMALAFSLAIVVVGPS---QLIAYPGIEPLLQKIAPFAIAA 349 Query: 365 FVTLSCTTSSAISLEGNRLWILKSSPVSKQSILLSKVAVNLTITLPXXXXXXXXXMISLR 424 ++++CTT ++SLEG +WI+KS P++ + I SK+ +NL++++P +I L+ Sbjct: 350 AISMTCTTCVSLSLEGKNVWIIKSLPIAPKMIYDSKILMNLSLSIPASLISAVLLIIGLK 409 Query: 425 MGWVEGLLLLVIPSLYACYSAMLGVIINLKLPKLEWTSEVAVVKQSAAVLVSMF 478 + L +++ P Y+ +SA+ G+ IN + +W SE VVKQS V MF Sbjct: 410 LDVWSSLFIVITPITYSLFSAVWGIFINNRFGYYDWVSETQVVKQSIGSFVGMF 463 >B7ILZ8.1 B7ILZ8_BACC2 Putative uncharacterized protein Length = 524 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 278/478 (58%), Gaps = 16/478 (3%) Query: 7 LTKIQLLSSFGLNKALHTKDVKERRKALLLSTGI-LAGVLMIAAASFGYSFMMALAFEQM 65 L KI+L++ GLN + KD K+++ +LL+ I L GV+++ Y A ++ Sbjct: 8 LLKIRLITQLGLNTFKYEKDKKKKQNKILLTASIALVGVMLML-----YCGASAYGLVKL 62 Query: 66 GRMDLLLAIMMTVTSLVGFFTTVYKASGVLFSYKDYDLVMSLPIKTSHVVASRILQLYVL 125 G +++ + ++S++ F T++KA+G +F++KDYD +MSLPI+ S V+ASR L LY+L Sbjct: 63 GMSEIIPVYALVISSILTLFFTIFKANGEIFAFKDYDFLMSLPIRVSTVIASRFLYLYLL 122 Query: 126 NLFFTVMVMLPAGAVYAVKVNPGAXXXXXXXXXXXXXXXXXXXAATVIGSGISWISSRFK 185 N F++++MLP G VY + NP A + G+ I+ I+S+FK Sbjct: 123 NTIFSIIIMLPMGVVYCIHENPSVSFYFMWFISMFIASLIPTTIAAIFGASITAIASKFK 182 Query: 186 ASRMISLVLTFAVMIALMVGSFGM-NGNEQ-ALADM---GTGLAEMIFKLYPLAALYVDA 240 + I+ +L+F V+I GSF + NGN Q +L DM G ++E + K+YPLA ++ A Sbjct: 183 NTNKITTILSFIVIITF--GSFMLKNGNAQYSLNDMNGIGAIVSEQLTKVYPLANMFQKA 240 Query: 241 VCSYRMGALLLFIALSVLSFMIFAAVLGTRYKAIHTGLTTYHASSKYIMKPLKVSSPFRA 300 + + M A +LF+ +SV+ + +F +L +YK I+TG+TTYH S Y + +K S A Sbjct: 241 IVNADMVAFILFVGISVIWYYLFIKILSLKYKQINTGITTYHMLSNYEINSMKKESVLVA 300 Query: 301 LYKKELRRYFSSSIYVLNTSMGMIXXXXXXXXXXXXXPEKLGELIEIPQLSHYLGTVAPI 360 LYKKEL R+FSS++YV+N+ MG++ P +LI P + L +AP Sbjct: 301 LYKKELTRFFSSTVYVINSGMGVVMALAFSLAIVVVGPS---QLIAYPGIEPLLQKIAPF 357 Query: 361 IVSLFVTLSCTTSSAISLEGNRLWILKSSPVSKQSILLSKVAVNLTITLPXXXXXXXXXM 420 ++ ++++CTT ++SLEG +WI+KS P++ + I SK+ +NL++++P + Sbjct: 358 AIAAAISMTCTTCVSLSLEGKNVWIIKSLPIAPKVIYDSKILMNLSLSIPASLISAVLLI 417 Query: 421 ISLRMGWVEGLLLLVIPSLYACYSAMLGVIINLKLPKLEWTSEVAVVKQSAAVLVSMF 478 I L++ L +++ P +Y+ +SA+ G+ IN + +W SE VVKQS V MF Sbjct: 418 IGLKLDVWSSLFIVITPIIYSLFSAVWGIFINNRFGYYDWISETQVVKQSIGSFVGMF 475 >Q3EYF8.1 Q3EYF8_BACTI ABC transporter permease protein Length = 524 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 278/478 (58%), Gaps = 16/478 (3%) Query: 7 LTKIQLLSSFGLNKALHTKDVKERRKALLLSTGI-LAGVLMIAAASFGYSFMMALAFEQM 65 L KI+L++ GLN + KD K+++ +LL+ I L GV+++ Y A ++ Sbjct: 8 LLKIRLITQLGLNTFKYEKDKKKKQNKILLTASIALVGVMLML-----YCGASAYGLVKL 62 Query: 66 GRMDLLLAIMMTVTSLVGFFTTVYKASGVLFSYKDYDLVMSLPIKTSHVVASRILQLYVL 125 G +++ + ++S++ F T++KA+G +F++KDYD +MSLPI+ S V+ASR L LY+L Sbjct: 63 GMSEIIPVYALVISSVLTLFFTIFKANGEIFAFKDYDFLMSLPIRVSTVIASRFLYLYLL 122 Query: 126 NLFFTVMVMLPAGAVYAVKVNPGAXXXXXXXXXXXXXXXXXXXAATVIGSGISWISSRFK 185 N F++++MLP G VY + NP A + G+ I+ I+S+FK Sbjct: 123 NTIFSIIIMLPMGVVYCIHENPSVSFYFMWFISMFIASLIPTTIAAIFGASITAIASKFK 182 Query: 186 ASRMISLVLTFAVMIALMVGSFGM-NGNEQ-ALADM---GTGLAEMIFKLYPLAALYVDA 240 + I+ +L+F V+I GSF + NGN Q +L DM G ++E + K+YPLA ++ A Sbjct: 183 NTNKITTILSFIVIITF--GSFMLKNGNAQYSLNDMNGIGAIVSEQLTKVYPLANMFQKA 240 Query: 241 VCSYRMGALLLFIALSVLSFMIFAAVLGTRYKAIHTGLTTYHASSKYIMKPLKVSSPFRA 300 + + M A +LF+ +SV+ + +F +L +YK I+TG+TTYH S Y + +K S A Sbjct: 241 IVNADMVAFILFVGISVIWYYLFIKILSLKYKQINTGITTYHMLSNYEINSMKKESVLVA 300 Query: 301 LYKKELRRYFSSSIYVLNTSMGMIXXXXXXXXXXXXXPEKLGELIEIPQLSHYLGTVAPI 360 LYKKEL R+FSS++YV+N+ MG++ P +LI P + L +AP Sbjct: 301 LYKKELTRFFSSTVYVINSGMGVVMALAFSLAIVVVGPS---QLIAYPGIEPLLQKIAPF 357 Query: 361 IVSLFVTLSCTTSSAISLEGNRLWILKSSPVSKQSILLSKVAVNLTITLPXXXXXXXXXM 420 ++ ++++CTT ++SLEG +WI+KS P++ + I SK+ +NL++++P + Sbjct: 358 AIAAAISMTCTTCVSLSLEGKNVWIIKSLPIAPKVIYDSKILMNLSLSIPASLISAVLLI 417 Query: 421 ISLRMGWVEGLLLLVIPSLYACYSAMLGVIINLKLPKLEWTSEVAVVKQSAAVLVSMF 478 I L++ L +++ P +Y+ +SA+ G+ IN + +W SE VVKQS V MF Sbjct: 418 IGLKLDVWSSLFIVITPIIYSLFSAVWGIFINNRFGYYDWISETQVVKQSIGSFVGMF 475 >A9VM53.1 A9VM53_BACWK Putative uncharacterized protein Length = 524 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 164/481 (34%), Positives = 278/481 (57%), Gaps = 22/481 (4%) Query: 7 LTKIQLLSSFGLNKALHTKDVKERRKALLLSTGI-LAGVLMI---AAASFGYSFMMALAF 62 L KI+L++ GLN + KD K+++ +LLS I L GV+++ A+++G Sbjct: 8 LLKIRLITQLGLNTFKYEKDKKKKQNKILLSASIALVGVMLMLYCGASAYG--------L 59 Query: 63 EQMGRMDLLLAIMMTVTSLVGFFTTVYKASGVLFSYKDYDLVMSLPIKTSHVVASRILQL 122 ++G +++ + ++S++ F T++KA+G +F++KDYDL+MSLPI+ S V+ SR L L Sbjct: 60 VRLGISEIIPVYALVISSVLTLFFTIFKANGEIFAFKDYDLLMSLPIRVSTVITSRFLYL 119 Query: 123 YVLNLFFTVMVMLPAGAVYAVKVNPGAXXXXXXXXXXXXXXXXXXXAATVIGSGISWISS 182 Y+LN F++++MLP G VY + P A + G+ I+ I+S Sbjct: 120 YLLNTIFSIIIMLPMGVVYGIHERPSVSFYFMWFISMFIASLIPTTIAAIFGAAITAIAS 179 Query: 183 RFKASRMISLVLTFAVMIALMVGSFGM-NGNEQ-ALADM---GTGLAEMIFKLYPLAALY 237 +FK + I+ +L+F V+I G F + NGN Q +L DM G ++E + K+YPLA ++ Sbjct: 180 KFKNTNKITTILSFIVIITF--GFFMLKNGNAQYSLNDMNGIGAIVSEQLTKVYPLANMF 237 Query: 238 VDAVCSYRMGALLLFIALSVLSFMIFAAVLGTRYKAIHTGLTTYHASSKYIMKPLKVSSP 297 A+ + A +LF+ +SV+ + +F +L +YK I+T +TTYH S Y + ++ S Sbjct: 238 QKAIVHADIVAFILFVGISVIWYYLFVKILSLKYKQINTEITTYHMLSNYEIHSMRKESV 297 Query: 298 FRALYKKELRRYFSSSIYVLNTSMGMIXXXXXXXXXXXXXPEKLGELIEIPQLSHYLGTV 357 ALYKKEL+R+FSS++YV+N+ MG++ P +LI P + L V Sbjct: 298 LAALYKKELKRFFSSTVYVVNSGMGVVMALAFALAIVVVGPS---QLIAYPGIEALLQKV 354 Query: 358 APIIVSLFVTLSCTTSSAISLEGNRLWILKSSPVSKQSILLSKVAVNLTITLPXXXXXXX 417 AP ++ ++++CTT ++SLEG +WI+KS P++ + I SK+ +NL++++P Sbjct: 355 APFAIAAAISMTCTTCVSLSLEGKNVWIIKSLPITPKMIYDSKILMNLSLSIPASLISSV 414 Query: 418 XXMISLRMGWVEGLLLLVIPSLYACYSAMLGVIINLKLPKLEWTSEVAVVKQSAAVLVSM 477 +I L++ LL+++ P Y+ +SA+ G+ IN + +W SE +VKQS V M Sbjct: 415 LLIIGLKLDIWSSLLIVITPITYSFFSAVWGIFINNRFGYYDWVSETQIVKQSVGSFVGM 474 Query: 478 F 478 F Sbjct: 475 F 475 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,350,508,250 Number of extensions: 77171503 Number of successful extensions: 304048 Number of sequences better than 1.0e-05: 57 Number of HSP's gapped: 303893 Number of HSP's successfully gapped: 57 Length of query: 532 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 391 Effective length of database: 1,732,333,088 Effective search space: 677342237408 Effective search space used: 677342237408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 134 (56.2 bits)