BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0042.p (237 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KQ53.1 A9KQ53_CLOPH ABC transporter related 384 e-105 C1I363.1 C1I363_9CLOT ABC transporter 352 1e-95 B8I502.1 B8I502_CLOCE ABC transporter related 348 3e-94 A9VM54.1 A9VM54_BACWK ABC transporter related 344 5e-93 C2Y0V4.1 C2Y0V4_BACCE ABC transporter, ATP-binding protein 342 2e-92 >A9KQ53.1 A9KQ53_CLOPH ABC transporter related Length = 236 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/235 (79%), Positives = 206/235 (87%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 MLTI +++K YKG KKAV++L+L VE GDIYGFIGHNGAGKTTT+RAVVGVLDFEEGDI Sbjct: 1 MLTIKNYSKIYKGNKKAVDNLSLTVEAGDIYGFIGHNGAGKTTTLRAVVGVLDFEEGDIL 60 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 IDGVSIKKDPV CK K AYIPDNPDLY+HLTGI YLNFIGDLF V K +RE IK Y D Sbjct: 61 IDGVSIKKDPVGCKKKMAYIPDNPDLYEHLTGIAYLNFIGDLFEVGKKEREERIKMYGDL 120 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F+IT NLGD I+SYSHGMKQKLAIISALIH+PKL+VLDEPFVGLDPKAAH LK IM ++C Sbjct: 121 FEITGNLGDSIASYSHGMKQKLAIISALIHEPKLMVLDEPFVGLDPKAAHQLKQIMTQMC 180 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKNSLEDVFLELID 235 +GSAIFFSTHVL+VAEKLCNKIAIIKGG+LIA G T EVKG SLE+VF+ELID Sbjct: 181 QNGSAIFFSTHVLEVAEKLCNKIAIIKGGKLIASGTTNEVKGNQSLEEVFMELID 235 >C1I363.1 C1I363_9CLOT ABC transporter Length = 237 Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 162/237 (68%), Positives = 206/237 (86%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 ML I +F+KSYK GK+AVN++++ V G+I+ FIGHNGAGKTTTI+A+VG+L+F+EGDI Sbjct: 1 MLEIINFSKSYKNGKRAVNNVSIKVNSGEIFAFIGHNGAGKTTTIKAIVGILEFDEGDIL 60 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 IDG SI DP+ CK K AYIPDNPD+Y+ LTGIQYLNFI D+++VSK +RERLIK YS+ Sbjct: 61 IDGDSINIDPIKCKRKIAYIPDNPDIYEALTGIQYLNFIADIYKVSKEERERLIKLYSEK 120 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F++T+ LGD+ISSYSHGMKQKL IISAL+H+PKLL+LDEPFVGLDPKA+H+LK M +LC Sbjct: 121 FELTSALGDLISSYSHGMKQKLVIISALLHRPKLLILDEPFVGLDPKASHILKEEMKKLC 180 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKNSLEDVFLELIDND 237 S G AIFFSTHVL+VAEKLC+K+AIIK G +++ G+ +EVKG +SLED+F+ELIDN+ Sbjct: 181 SEGVAIFFSTHVLEVAEKLCDKVAIIKDGNIVSQGKMDEVKGNSSLEDIFMELIDNE 237 >B8I502.1 B8I502_CLOCE ABC transporter related Length = 237 Score = 348 bits (892), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 159/237 (67%), Positives = 200/237 (84%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 MLTI++ +K+YKGGK+AV++L L +++GDIYGFIGHNGAGKTTTI+ V G+L+F EGDI Sbjct: 1 MLTISNLSKTYKGGKRAVDNLTLEIQKGDIYGFIGHNGAGKTTTIKCVAGILEFSEGDIL 60 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 I+G S+K +P+ CK AYIPDNPDLY+++TGIQYLNFI D+F +S +RE+ IK+Y+D Sbjct: 61 IEGKSVKTNPLECKRMIAYIPDNPDLYENMTGIQYLNFIADVFSISANEREKSIKEYADM 120 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 ++T +LGD+ISSYSHGMKQKLAIISAL+H P L ++DEPFVGLDPKAAH LK +M E C Sbjct: 121 MELTESLGDLISSYSHGMKQKLAIISALVHNPSLYIMDEPFVGLDPKAAHTLKEVMKEKC 180 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKNSLEDVFLELIDND 237 GSAIFFSTHVL+VAEKLCNKIAIIK G+LI G T+ V+G +SLE +FLELIDN+ Sbjct: 181 RQGSAIFFSTHVLEVAEKLCNKIAIIKDGKLITSGETDSVRGNSSLEQLFLELIDNE 237 >A9VM54.1 A9VM54_BACWK ABC transporter related Length = 238 Score = 344 bits (882), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 162/237 (68%), Positives = 200/237 (84%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 ML I +F+K+YKGGKKAV+ LN+ V+ GDI+GFIGHNGAGK+TTI+++VGV+DFEEG+I Sbjct: 1 MLEIINFSKTYKGGKKAVDQLNITVQAGDIFGFIGHNGAGKSTTIKSLVGVIDFEEGEIF 60 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 +DG S+KKDP+ACK AYIPDNPDLY+ LTGIQYLNF+ D+F+VS DRE+ I+KY DA Sbjct: 61 VDGYSVKKDPIACKRVVAYIPDNPDLYEQLTGIQYLNFVADVFKVSAKDREKEIQKYGDA 120 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F+IT LGD+ISSYSHGMKQK+AIISA++HKPKLLVLDEPFVGLDPKAA +LK IM ELC Sbjct: 121 FEITPYLGDLISSYSHGMKQKVAIISAVLHKPKLLVLDEPFVGLDPKAAVVLKGIMKELC 180 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKNSLEDVFLELIDND 237 GSAIFFSTHVLDVAEKLCNKIA+I G+L G + + SLE++F++ + N+ Sbjct: 181 EKGSAIFFSTHVLDVAEKLCNKIAMINRGKLALSGEVNSLIKEGSLEELFMKELANE 237 >C2Y0V4.1 C2Y0V4_BACCE ABC transporter, ATP-binding protein Length = 238 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 162/237 (68%), Positives = 199/237 (83%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 ML I +F+K+YKGGKKAV+ LN+ V+ GDI+GFIGHNGAGK+TTI+++VGV+DFEEG+I Sbjct: 1 MLEIINFSKTYKGGKKAVDQLNITVQAGDIFGFIGHNGAGKSTTIKSLVGVIDFEEGEIF 60 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 +DG S+KKDP+ACK AYIPDNPDLY+ LTGIQYLNF+ D+F+VS DRE I+KY DA Sbjct: 61 VDGHSVKKDPIACKRVMAYIPDNPDLYEQLTGIQYLNFVADVFKVSAKDREEQIQKYGDA 120 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F+IT LGD+ISSYSHGMKQK+AIISA++HKPKLLVLDEPFVGLDPKAA +LK IM ELC Sbjct: 121 FEITPYLGDLISSYSHGMKQKVAIISAVLHKPKLLVLDEPFVGLDPKAAVVLKGIMKELC 180 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKNSLEDVFLELIDND 237 GSAIFFSTHVLDVAEKLCNKIA+I G+L G + + SLE++F++ + N+ Sbjct: 181 EKGSAIFFSTHVLDVAEKLCNKIAMINRGKLALSGEVNSLIKEGSLEELFMKELANE 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,385,111,958 Number of extensions: 55552181 Number of successful extensions: 422543 Number of sequences better than 1.0e-05: 74533 Number of HSP's gapped: 363247 Number of HSP's successfully gapped: 78911 Length of query: 237 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 105 Effective length of database: 1,817,122,223 Effective search space: 190797833415 Effective search space used: 190797833415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)