BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0041.p (367 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65J13.1 Q65J13_BACLD AraR 639 0.0 Q62UH0.1 Q62UH0_BACLD Transcriptional regulator (LacI family) 632 e-179 Q8EMP1.1 Q8EMP1_OCEIH Transcriptional repressor of the arabinose... 587 e-166 A8FFH9.1 A8FFH9_BACP2 Transcriptional regulator 563 e-158 B4ALH9.1 B4ALH9_BACPU Arabinose metabolism transcriptional repre... 562 e-158 >Q65J13.1 Q65J13_BACLD AraR Length = 388 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/366 (83%), Positives = 335/366 (91%) Query: 2 KEVRNVKTKYQVIFDDIKSNILSGAYTVGEQIPTESALQEMYNVSRQTVRKAILELSNEG 61 KEV +K KY+VI +DIKS ILSG Y G+QIPTESA+QE Y VSR TVRKAILELSNEG Sbjct: 21 KEVSEMKPKYKVIINDIKSKILSGVYRAGDQIPTESAIQEEYKVSRHTVRKAILELSNEG 80 Query: 62 FLRSEKGSGTYVSHQFRSKSAGSSNNKTIGVITTYISDYIFPSIIRGIEGRLNEDNYSLL 121 FLRSEKGSGTYVS+Q++SK+ G+SNNK IGVITTYISDYIFPSIIRGIEGRLNE NYSLL Sbjct: 81 FLRSEKGSGTYVSNQYQSKAGGNSNNKIIGVITTYISDYIFPSIIRGIEGRLNEANYSLL 140 Query: 122 LASTNNDVAQEKKALEMMLSFGVEGLIIEPTKSNLYNPNIAYYLSFKEQDVPFIMINAYY 181 LASTNNDV QEKKALEMMLSFGV+GLI+EPTKSNLYNPNIAYYLSFKEQD+PFIMINAYY Sbjct: 141 LASTNNDVEQEKKALEMMLSFGVDGLIVEPTKSNLYNPNIAYYLSFKEQDIPFIMINAYY 200 Query: 182 EELEVPFFCLDDVQSSYLATKELISKGHTQIGIIAKMDDLQGKYRMKGYIKALGEAKLRF 241 EEL+VPF CLDDVQSSYLATKELISKGHTQIG+I+KMDDLQGKYRMKGYIKALGEAKLRF Sbjct: 201 EELDVPFLCLDDVQSSYLATKELISKGHTQIGLISKMDDLQGKYRMKGYIKALGEAKLRF 260 Query: 242 HPEQVLSFDTETKQALSANLKNFLSENREVLTAIVCYNDEVGLEAVNVCRQLDIAIPEDL 301 +PE VLS++ ETK L +LK FL+E R+VLTAIVCYNDEVGLE NVCRQL+I+IP+ L Sbjct: 261 YPEHVLSYNIETKLDLYTDLKKFLNEKRDVLTAIVCYNDEVGLEVANVCRQLNISIPDKL 320 Query: 302 SIIGQDNSYIAKNASIKLTTLTHPQEQMGRDAAEWVIKKLQGKKDLRNSTYYQPVLIEGE 361 SIIGQDNSYIAKNA+IKLTTLTHPQEQMG DAA+WVIKKLQGKKDL N TYYQPVL+EGE Sbjct: 321 SIIGQDNSYIAKNANIKLTTLTHPQEQMGHDAADWVIKKLQGKKDLPNETYYQPVLVEGE 380 Query: 362 TVKALE 367 TVK LE Sbjct: 381 TVKELE 386 >Q62UH0.1 Q62UH0_BACLD Transcriptional regulator (LacI family) Length = 363 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 304/361 (84%), Positives = 332/361 (91%) Query: 7 VKTKYQVIFDDIKSNILSGAYTVGEQIPTESALQEMYNVSRQTVRKAILELSNEGFLRSE 66 +K KY+VI +DIKS ILSG Y G+QIPTESA+QE Y VSR TVRKAILELSNEGFLRSE Sbjct: 1 MKPKYKVIINDIKSKILSGVYRAGDQIPTESAIQEEYKVSRHTVRKAILELSNEGFLRSE 60 Query: 67 KGSGTYVSHQFRSKSAGSSNNKTIGVITTYISDYIFPSIIRGIEGRLNEDNYSLLLASTN 126 KGSGTYVS+Q++SK+ G+SNNK IGVITTYISDYIFPSIIRGIEGRLNE NYSLLLASTN Sbjct: 61 KGSGTYVSNQYQSKAGGNSNNKIIGVITTYISDYIFPSIIRGIEGRLNEANYSLLLASTN 120 Query: 127 NDVAQEKKALEMMLSFGVEGLIIEPTKSNLYNPNIAYYLSFKEQDVPFIMINAYYEELEV 186 NDV QEKKALEMMLSFGV+GLI+EPTKSNLYNPNIAYYLSFKEQD+PFIMINAYYEEL+V Sbjct: 121 NDVEQEKKALEMMLSFGVDGLIVEPTKSNLYNPNIAYYLSFKEQDIPFIMINAYYEELDV 180 Query: 187 PFFCLDDVQSSYLATKELISKGHTQIGIIAKMDDLQGKYRMKGYIKALGEAKLRFHPEQV 246 PF CLDDVQSSYLATKELISKGHTQIG+I+KMDDLQGKYRMKGYIKALGEAKLRF+PE V Sbjct: 181 PFLCLDDVQSSYLATKELISKGHTQIGLISKMDDLQGKYRMKGYIKALGEAKLRFYPEHV 240 Query: 247 LSFDTETKQALSANLKNFLSENREVLTAIVCYNDEVGLEAVNVCRQLDIAIPEDLSIIGQ 306 LS++ ETK L +LK FL+E R+VLTAIVCYNDEVGLE NVCRQL+I+IP+ LSIIGQ Sbjct: 241 LSYNIETKLDLYTDLKKFLNEKRDVLTAIVCYNDEVGLEVANVCRQLNISIPDKLSIIGQ 300 Query: 307 DNSYIAKNASIKLTTLTHPQEQMGRDAAEWVIKKLQGKKDLRNSTYYQPVLIEGETVKAL 366 DNSYIAKNA+IKLTTLTHPQEQMG DAA+WVIKKLQGKKDL N TYYQPVL+EGETVK L Sbjct: 301 DNSYIAKNANIKLTTLTHPQEQMGHDAADWVIKKLQGKKDLPNETYYQPVLVEGETVKEL 360 Query: 367 E 367 E Sbjct: 361 E 361 >Q8EMP1.1 Q8EMP1_OCEIH Transcriptional repressor of the arabinose operon Length = 363 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 283/362 (78%), Positives = 324/362 (89%), Gaps = 1/362 (0%) Query: 7 VKTKYQVIFDDIKSNILSGAYTVGEQIPTESALQEMYNVSRQTVRKAILELSNEGFLRSE 66 +K KYQVI DD+KS ILSG Y+V ++IPTES+LQ+ YNVSR TVRKAILELSNEGFLRSE Sbjct: 1 MKPKYQVIIDDMKSKILSGEYSVLDKIPTESSLQQNYNVSRHTVRKAILELSNEGFLRSE 60 Query: 67 KGSGTYVSHQFRSKSAGSSNNK-TIGVITTYISDYIFPSIIRGIEGRLNEDNYSLLLAST 125 KGSGTYVS+ +++K +G++NNK TIGVITTYISDYIFPSIIRGIE RLNEDNYSLLLAST Sbjct: 61 KGSGTYVSNLYKTKYSGNTNNKKTIGVITTYISDYIFPSIIRGIERRLNEDNYSLLLAST 120 Query: 126 NNDVAQEKKALEMMLSFGVEGLIIEPTKSNLYNPNIAYYLSFKEQDVPFIMINAYYEELE 185 NNDV QEKKALEMMLS+G++GLI+EPTKSNLYNPNIAYYL F EQD+PFIMINAYYEEL+ Sbjct: 121 NNDVEQEKKALEMMLSYGIDGLIVEPTKSNLYNPNIAYYLLFMEQDIPFIMINAYYEELD 180 Query: 186 VPFFCLDDVQSSYLATKELISKGHTQIGIIAKMDDLQGKYRMKGYIKALGEAKLRFHPEQ 245 VPF LDDVQSSYLAT ELI KGH QIG+I+K DDLQGK+RMKGYIKALGEAKLRF PE Sbjct: 181 VPFLSLDDVQSSYLATNELILKGHKQIGLISKEDDLQGKFRMKGYIKALGEAKLRFQPEN 240 Query: 246 VLSFDTETKQALSANLKNFLSENREVLTAIVCYNDEVGLEAVNVCRQLDIAIPEDLSIIG 305 V S++TETK+ LS +LK+F++ENR LTAIVCYNDEVGL N+C+QL ++IP++LSIIG Sbjct: 241 VFSYNTETKENLSTDLKDFINENRGFLTAIVCYNDEVGLVVANLCKQLGVSIPDELSIIG 300 Query: 306 QDNSYIAKNASIKLTTLTHPQEQMGRDAAEWVIKKLQGKKDLRNSTYYQPVLIEGETVKA 365 QDNSYIA+NA+IKLTTLTHPQEQMG DAA+WVIKKLQG KD+ N YYQP LI+GETVK Sbjct: 301 QDNSYIAQNANIKLTTLTHPQEQMGNDAADWVIKKLQGSKDVSNEYYYQPRLIKGETVKE 360 Query: 366 LE 367 LE Sbjct: 361 LE 362 >A8FFH9.1 A8FFH9_BACP2 Transcriptional regulator Length = 366 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/361 (76%), Positives = 322/361 (89%), Gaps = 1/361 (0%) Query: 7 VKTKYQVIFDDIKSNILSGAYTVGEQIPTESALQEMYNVSRQTVRKAILELSNEGFLRSE 66 +K KYQ+I DDIKS IL+G Y +GE+IPTES+LQEMY VSR TVRKAILELS+EGFLRSE Sbjct: 1 MKKKYQIIIDDIKSKILTGDYRIGERIPTESSLQEMYQVSRHTVRKAILELSSEGFLRSE 60 Query: 67 KGSGTYVSHQFRSKSAGSSNNKTIGVITTYISDYIFPSIIRGIEGRLNEDNYSLLLASTN 126 KGSGT+V++Q+++K AG ++ KTIGVITTYISDYIFPSIIRGIE RLNE+NYSLLLASTN Sbjct: 61 KGSGTFVTNQYQTKPAGHAHMKTIGVITTYISDYIFPSIIRGIESRLNEENYSLLLASTN 120 Query: 127 NDVAQEKKALEMMLSFGVEGLIIEPTKSNLYNPNIAYYLSFKEQDVPFIMINAYYEELEV 186 NDV QEKKALEMMLSFGV+GLI+EPTKSNLYNPNI+YYLSFKEQDVP IMINAYYE+LEV Sbjct: 121 NDVDQEKKALEMMLSFGVDGLIVEPTKSNLYNPNISYYLSFKEQDVPLIMINAYYEQLEV 180 Query: 187 PFFCLDDVQSSYLATKELISKGHTQIGIIAKMDDLQGKYRMKGYIKALGEAKLRFHPEQV 246 PF CLDDV+SSYLATKELI+ GH QIG+I+K DDLQGKYRMKGYI+ALGEAKL F PE V Sbjct: 181 PFLCLDDVKSSYLATKELITSGHQQIGLISKTDDLQGKYRMKGYIQALGEAKLNFLPEHV 240 Query: 247 LSFDTETKQALSANLKNFLSENREVLTAIVCYNDEVGLEAVNVCRQLDIAIPEDLSIIGQ 306 L FDTE+KQ L ++K FL +++ LTA+VCYNDEVGLE NVC + ++IPEDLSIIGQ Sbjct: 241 LFFDTESKQHLGDDIKTFLLKHQHELTALVCYNDEVGLEVANVCSDIGLSIPEDLSIIGQ 300 Query: 307 DNSYIA-KNASIKLTTLTHPQEQMGRDAAEWVIKKLQGKKDLRNSTYYQPVLIEGETVKA 365 DNSYIA KNA++KLTTLTHPQEQMGRDAA+W+IKK+QGKK+L + T+Y+P L+ GET+K Sbjct: 301 DNSYIAQKNANVKLTTLTHPQEQMGRDAADWMIKKVQGKKNLPHQTFYEPELVPGETIKQ 360 Query: 366 L 366 + Sbjct: 361 M 361 >B4ALH9.1 B4ALH9_BACPU Arabinose metabolism transcriptional repressor Length = 366 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/361 (75%), Positives = 321/361 (88%), Gaps = 1/361 (0%) Query: 7 VKTKYQVIFDDIKSNILSGAYTVGEQIPTESALQEMYNVSRQTVRKAILELSNEGFLRSE 66 +K KYQ+I DDIKS IL+G Y +GE+IPTES+LQEMY VSR TVRKAILELS+EGFLRSE Sbjct: 1 MKKKYQIIIDDIKSKILTGDYRIGERIPTESSLQEMYQVSRHTVRKAILELSSEGFLRSE 60 Query: 67 KGSGTYVSHQFRSKSAGSSNNKTIGVITTYISDYIFPSIIRGIEGRLNEDNYSLLLASTN 126 KGSGT+V++Q+++K AG ++ +TIGVITTYISDYIFPSIIRGIE RLNE+NYSLLLASTN Sbjct: 61 KGSGTFVTNQYQTKPAGHTHMRTIGVITTYISDYIFPSIIRGIESRLNEENYSLLLASTN 120 Query: 127 NDVAQEKKALEMMLSFGVEGLIIEPTKSNLYNPNIAYYLSFKEQDVPFIMINAYYEELEV 186 NDV QEKKALEMMLSFGV+GLI+EPTKSNLYNPNI+YYLSFKEQDVP IMINAYYE+LEV Sbjct: 121 NDVEQEKKALEMMLSFGVDGLIVEPTKSNLYNPNISYYLSFKEQDVPLIMINAYYEQLEV 180 Query: 187 PFFCLDDVQSSYLATKELISKGHTQIGIIAKMDDLQGKYRMKGYIKALGEAKLRFHPEQV 246 PF CLDDV+SSYLATKELI+ GH QIG+I+K DDLQGKYRMKGYI+ALGEAKL F PE V Sbjct: 181 PFLCLDDVKSSYLATKELITSGHQQIGLISKTDDLQGKYRMKGYIQALGEAKLNFLPEHV 240 Query: 247 LSFDTETKQALSANLKNFLSENREVLTAIVCYNDEVGLEAVNVCRQLDIAIPEDLSIIGQ 306 L FDTE+KQ L ++K FL +++ LTA+VCYNDEVGLE NVC + ++IPEDLSIIGQ Sbjct: 241 LFFDTESKQHLGDDIKTFLLKHQHELTALVCYNDEVGLEVANVCSDIGLSIPEDLSIIGQ 300 Query: 307 DNSYIA-KNASIKLTTLTHPQEQMGRDAAEWVIKKLQGKKDLRNSTYYQPVLIEGETVKA 365 DNSYIA KNA +KLTTLTHPQEQMGRDAA+W+IKK+QGKK+L + T+Y+P L+ GET+K Sbjct: 301 DNSYIAQKNAHVKLTTLTHPQEQMGRDAADWMIKKVQGKKNLPHQTFYEPELVPGETIKQ 360 Query: 366 L 366 + Sbjct: 361 M 361 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,020,764,153 Number of extensions: 81126214 Number of successful extensions: 202586 Number of sequences better than 1.0e-05: 7055 Number of HSP's gapped: 195667 Number of HSP's successfully gapped: 7055 Length of query: 367 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 230 Effective length of database: 1,770,017,148 Effective search space: 407103944040 Effective search space used: 407103944040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)